Cp4.1LG01g20450 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g20450
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	zinc_ribbon_15 domain-containing protein
Location	Cp4.1LG01: 17401636 .. 17401974 (-)
RNA-Seq Expression	Cp4.1LG01g20450
Synteny	Cp4.1LG01g20450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTCTTCTTCGTCGGAGGGTTAGAGCAACAAGTCCGCCATCTCTTGAAAGCCGGTGCCGGCCGATGCATAAGCTGCAACTCACCGGCCGATCTCGTAGACTACGAAAAAGTTCTGAAGCTCTTTTTTGTTCCAGTGTGGCGGTGGCCAGGAAAAGAACCGTTGATGCACTGCAACAACTGTAAGCTGTTTTTCCCTCGATCATTCTCACCGCCGCCCATTTCCGATCAATTGCCGCCGTCAGCCGCTCTTTTGAGGGCCCTTCGTTGCCATTCCTGTAACAAAGTAGTGGAGCCCGATTTCAGTTTCTGCCCTTTCTGTGGCTCTTCTGTGTAA

mRNA sequence

ATGTTCTTCTTCTTCGTCGGAGGGTTAGAGCAACAAGTCCGCCATCTCTTGAAAGCCGGTGCCGGCCGATGCATAAGCTGCAACTCACCGGCCGATCTCGTAGACTACGAAAAAGTTCTGAAGCTCTTTTTTGTTCCAGTGTGGCGGTGGCCAGGAAAAGAACCGTTGATGCACTGCAACAACTGTAAGCTGTTTTTCCCTCGATCATTCTCACCGCCGCCCATTTCCGATCAATTGCCGCCGTCAGCCGCTCTTTTGAGGGCCCTTCGTTGCCATTCCTGTAACAAAGTAGTGGAGCCCGATTTCAGTTTCTGCCCTTTCTGTGGCTCTTCTGTGTAA

Coding sequence (CDS)

ATGTTCTTCTTCTTCGTCGGAGGGTTAGAGCAACAAGTCCGCCATCTCTTGAAAGCCGGTGCCGGCCGATGCATAAGCTGCAACTCACCGGCCGATCTCGTAGACTACGAAAAAGTTCTGAAGCTCTTTTTTGTTCCAGTGTGGCGGTGGCCAGGAAAAGAACCGTTGATGCACTGCAACAACTGTAAGCTGTTTTTCCCTCGATCATTCTCACCGCCGCCCATTTCCGATCAATTGCCGCCGTCAGCCGCTCTTTTGAGGGCCCTTCGTTGCCATTCCTGTAACAAAGTAGTGGAGCCCGATTTCAGTTTCTGCCCTTTCTGTGGCTCTTCTGTGTAA

Protein sequence

MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCNNCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSV

Homology

[Close]

BLAST of Cp4.1LG01g20450 vs. NCBI nr
Match: XP_023541925.1 (uncharacterized protein LOC111801919 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 247 bits (630), Expect = 8.43e-83
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSV 112
           NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSV
Sbjct: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSV 112

[Close]

BLAST of Cp4.1LG01g20450 vs. NCBI nr
Match: XP_022962458.1 (uncharacterized protein LOC111462885 [Cucurbita moschata])

HSP 1 Score: 246 bits (627), Expect = 2.42e-82
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSV 112
           NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSS+
Sbjct: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSL 112

[Close]

BLAST of Cp4.1LG01g20450 vs. NCBI nr
Match: KAG6602097.1 (hypothetical protein SDJN03_07330, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032802.1 hypothetical protein SDJN02_06852, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238 bits (608), Expect = 1.92e-79
Identity = 108/112 (96.43%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFF VGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFLVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSV 112
           NCKLFFPRSFSP PISDQLPPS ALLRALRCHSCNKVVEPDFSFCPFCGSS+
Sbjct: 61  NCKLFFPRSFSPRPISDQLPPSTALLRALRCHSCNKVVEPDFSFCPFCGSSL 112

[Close]

BLAST of Cp4.1LG01g20450 vs. NCBI nr
Match: XP_038884584.1 (uncharacterized protein LOC120075351 [Benincasa hispida])

HSP 1 Score: 220 bits (561), Expect = 2.85e-72
Identity = 97/112 (86.61%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGL+QQVR ++K+ AGRCI+CNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLQQQVRQIIKSSAGRCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSV 112
           NCKLFFP+SFSPPPISDQ  PSAALLRAL C SCN+VVEPDFSFCP+CGSS+
Sbjct: 61  NCKLFFPQSFSPPPISDQSLPSAALLRALHCRSCNRVVEPDFSFCPYCGSSL 112

[Close]

BLAST of Cp4.1LG01g20450 vs. NCBI nr
Match: XP_022992997.1 (uncharacterized protein LOC111489157 [Cucurbita maxima])

HSP 1 Score: 218 bits (554), Expect = 3.33e-71
Identity = 98/112 (87.50%), Postives = 102/112 (91.07%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR LLK+ AGRCI+CNSPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSAAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSV 112
           NC LFFPRSFSPPPISDQ  P AAL R LRC SCNKVVEPDFSFCPFCG S+
Sbjct: 61  NCNLFFPRSFSPPPISDQSTPPAALSRTLRCRSCNKVVEPDFSFCPFCGFSL 112

[Close]

BLAST of Cp4.1LG01g20450 vs. ExPASy TrEMBL
Match: A0A6J1HEV4 (uncharacterized protein LOC111462885 OS=Cucurbita moschata OX=3662 GN=LOC111462885 PE=4 SV=1)

HSP 1 Score: 246 bits (627), Expect = 1.17e-82
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSV 112
           NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSS+
Sbjct: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSL 112

[Close]

BLAST of Cp4.1LG01g20450 vs. ExPASy TrEMBL
Match: A0A6J1JRI4 (uncharacterized protein LOC111489157 OS=Cucurbita maxima OX=3661 GN=LOC111489157 PE=4 SV=1)

HSP 1 Score: 218 bits (554), Expect = 1.61e-71
Identity = 98/112 (87.50%), Postives = 102/112 (91.07%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR LLK+ AGRCI+CNSPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSAAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSV 112
           NC LFFPRSFSPPPISDQ  P AAL R LRC SCNKVVEPDFSFCPFCG S+
Sbjct: 61  NCNLFFPRSFSPPPISDQSTPPAALSRTLRCRSCNKVVEPDFSFCPFCGFSL 112

[Close]

BLAST of Cp4.1LG01g20450 vs. ExPASy TrEMBL
Match: A0A6J1FFV9 (uncharacterized protein LOC111445104 OS=Cucurbita moschata OX=3662 GN=LOC111445104 PE=4 SV=1)

HSP 1 Score: 213 bits (541), Expect = 1.55e-69
Identity = 96/112 (85.71%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR LLK+ AGRCI+CNSPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSV 112
           NC LFFP SFSPPPISDQ  P AA  R LRC SCNKVVEP+FSFCPFCGSS+
Sbjct: 61  NCNLFFPPSFSPPPISDQSTPPAAPSRTLRCRSCNKVVEPNFSFCPFCGSSL 112

[Close]

BLAST of Cp4.1LG01g20450 vs. ExPASy TrEMBL
Match: A0A0A0KDD6 (zinc_ribbon_15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G385100 PE=4 SV=1)

HSP 1 Score: 211 bits (538), Expect = 4.30e-69
Identity = 97/112 (86.61%), Postives = 102/112 (91.07%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR LLK+GA RCI+CNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSV 112
           NCKLFFP+S SPP  SDQ   SA LLRALRC SCNKVVEPDFSFCP+CGSS+
Sbjct: 61  NCKLFFPQSLSPPSFSDQST-SATLLRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of Cp4.1LG01g20450 vs. ExPASy TrEMBL
Match: A0A6J1CIA7 (uncharacterized protein LOC111011876 OS=Momordica charantia OX=3673 GN=LOC111011876 PE=4 SV=1)

HSP 1 Score: 210 bits (535), Expect = 1.32e-68
Identity = 95/113 (84.07%), Postives = 103/113 (91.15%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFF GGLEQQVR LLK+GAGRCI CNSPADLVDYEKVLKLFF PVWRWPGKEPLMHCN
Sbjct: 1   MFFFFAGGLEQQVRQLLKSGAGRCIICNSPADLVDYEKVLKLFFFPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPRSFSPPPISDQLPPS-AALLRALRCHSCNKVVEPDFSFCPFCGSSV 112
           NCKLFFP+S SPPP+SDQLPP+ AAL + LRC SCN++VEP FSFCPFCGSS+
Sbjct: 61  NCKLFFPQSCSPPPMSDQLPPTPAALSKDLRCRSCNRLVEPHFSFCPFCGSSL 113

[Close]

BLAST of Cp4.1LG01g20450 vs. TAIR 10
Match: AT1G44414.1 (unknown protein; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 167.5 bits (423), Expect = 5.9e-42
Identity = 72/112 (64.29%), Postives = 86/112 (76.79%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGL QQVR +LK+GAG CI C S ADLV+Y+KV+KLFFVPVWRWPGK+PL+HC 
Sbjct: 1   MFFFFVGGLGQQVRQVLKSGAGTCIRCGSQADLVEYDKVIKLFFVPVWRWPGKDPLLHCR 60

Query: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSV 113
           +C LFFP+S SPPP+S              C  C++VVEP+F FCPFCGSS+
Sbjct: 61  DCDLFFPQSLSPPPVS-----------LATCRFCDRVVEPEFRFCPFCGSSL 101

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g20450 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g20450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023541925.1	8.43e-83	100.00	uncharacterized protein LOC111801919 [Cucurbita pepo subsp. pepo]	[more]
XP_022962458.1	2.42e-82	99.11	uncharacterized protein LOC111462885 [Cucurbita moschata]	[more]
KAG6602097.1	1.92e-79	96.43	hypothetical protein SDJN03_07330, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038884584.1	2.85e-72	86.61	uncharacterized protein LOC120075351 [Benincasa hispida]	[more]
XP_022992997.1	3.33e-71	87.50	uncharacterized protein LOC111489157 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG01g20450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HEV4	1.17e-82	99.11	uncharacterized protein LOC111462885 OS=Cucurbita moschata OX=3662 GN=LOC1114628...	[more]
A0A6J1JRI4	1.61e-71	87.50	uncharacterized protein LOC111489157 OS=Cucurbita maxima OX=3661 GN=LOC111489157...	[more]
A0A6J1FFV9	1.55e-69	85.71	uncharacterized protein LOC111445104 OS=Cucurbita moschata OX=3662 GN=LOC1114451...	[more]
A0A0A0KDD6	4.30e-69	86.61	zinc_ribbon_15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G385...	[more]
A0A6J1CIA7	1.32e-68	84.07	uncharacterized protein LOC111011876 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]

BLAST of Cp4.1LG01g20450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G44414.1	5.9e-42	64.29	unknown protein; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031493	Zinc-ribbon 15	PFAM	PF17032	zinc_ribbon_15	coord: 23..109 e-value: 8.3E-23 score: 81.0
None	No IPR available	PANTHER	PTHR36718	OS05G0435400 PROTEIN	coord: 1..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g20450.1	Cp4.1LG01g20450.1	mRNA