Cp4.1LG01g19850 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g19850
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	transcription repressor KAN1-like isoform X3
Location	Cp4.1LG01: 16933603 .. 16934354 (-)
RNA-Seq Expression	Cp4.1LG01g19850
Synteny	Cp4.1LG01g19850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTACTCTCTTTGCCTTTCCCCTTTATTCCCTTCTTTATTTTCTTCTCTCTTCTCTCTCTTCTGCTCTATATCTGTGCATGTCTCTCAAGAACAACAAGAGCACCAAGAACAACAACACCAATCAAACCCTAAACTCATATCTTCTCTTTGTTTTTCAATCATTTCTTCCTTTTTTTTTTGAAAAAAAAACATGCCCAACATTCAAAGCTTTATAAATATTCAATCTTCATCATCTTCATCATCTTCATCTTCATCTTCTTCTTCTTCATTTCTTGATCTTGATCTTTCCCTTCAAATTTCTCCTCCTAATAATGGAGTTGGGGCTGTTCATACTCATAAATTCAATCAAATCACTAATGGGGTTTGGCTTTTCAATCATCATCATAATAATAATCATCATCATCATTCCTTCGCTTCGCCCCCGCCGTTTCTTCGGAGCCAATTGGATCCGGGTCGGTCGCCGATGGCAAGAGGGCGGTGCATAAGGGCGCCGAGGATGCGGTGGACGAGTACTCTCCATGCTCAGTTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGTAACAATTTTGAAGCTTTATTTTCATTTACTTTTTTTAGATTCAACGTTCTAAAAGTTTGGTTTGTTTGTGTTGTTTTTCAGGAGCTACACCTAAATCTGTTCTAGAGCTTATGGATGTCAAGGATCTTACATTGGCTCATGTCAAAAGCCATTTACAGGTTTTTTTAAAAAATATTACGTTATAA

mRNA sequence

TATTACTCTCTTTGCCTTTCCCCTTTATTCCCTTCTTTATTTTCTTCTCTCTTCTCTCTCTTCTGCTCTATATCTGTGCATGTCTCTCAAGAACAACAAGAGCACCAAGAACAACAACACCAATCAAACCCTAAACTCATATCTTCTCTTTGTTTTTCAATCATTTCTTCCTTTTTTTTTTGAAAAAAAAACATGCCCAACATTCAAAGCTTTATAAATATTCAATCTTCATCATCTTCATCATCTTCATCTTCATCTTCTTCTTCTTCATTTCTTGATCTTGATCTTTCCCTTCAAATTTCTCCTCCTAATAATGGAGTTGGGGCTGTTCATACTCATAAATTCAATCAAATCACTAATGGGGTTTGGCTTTTCAATCATCATCATAATAATAATCATCATCATCATTCCTTCGCTTCGCCCCCGCCGTTTCTTCGGAGCCAATTGGATCCGGGTCGGTCGCCGATGGCAAGAGGGCGGTGCATAAGGGCGCCGAGGATGCGGTGGACGAGTACTCTCCATGCTCAGTTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACACCTAAATCTGTTCTAGAGCTTATGGATGTCAAGGATCTTACATTGGCTCATGTCAAAAGCCATTTACAGGTTTTTTTAAAAAATATTACGTTATAA

Coding sequence (CDS)

ATGCCCAACATTCAAAGCTTTATAAATATTCAATCTTCATCATCTTCATCATCTTCATCTTCATCTTCTTCTTCTTCATTTCTTGATCTTGATCTTTCCCTTCAAATTTCTCCTCCTAATAATGGAGTTGGGGCTGTTCATACTCATAAATTCAATCAAATCACTAATGGGGTTTGGCTTTTCAATCATCATCATAATAATAATCATCATCATCATTCCTTCGCTTCGCCCCCGCCGTTTCTTCGGAGCCAATTGGATCCGGGTCGGTCGCCGATGGCAAGAGGGCGGTGCATAAGGGCGCCGAGGATGCGGTGGACGAGTACTCTCCATGCTCAGTTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACACCTAAATCTGTTCTAGAGCTTATGGATGTCAAGGATCTTACATTGGCTCATGTCAAAAGCCATTTACAGGTTTTTTTAAAAAATATTACGTTATAA

Protein sequence

MPNIQSFINIQSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWLFNHHHNNNHHHHSFASPPPFLRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVFLKNITL

Homology

[Close]

BLAST of Cp4.1LG01g19850 vs. ExPASy Swiss-Prot
Match: Q93WJ9 (Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-27
Identity = 76/132 (57.58%), Postives = 89/132 (67.42%), Query Frame = 0


Query: 22  SSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQI-TNGVWLFNHHHNNNHHHHSFASPPPF 81
           +SSS + +   SLQ SP   GV   H H  NQ    G    +  H++NHHHH        
Sbjct: 149 NSSSGYNNAYRSLQSSPRLKGVPLHHHHHHNQYGVVGSSDSSSPHHHNHHHHG------M 208

Query: 82  LRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDL 141
           +RS+  P    M   R +RAPRMRWTS+LHA+FVHAVELLGGHERATPKSVLELMDVKDL
Sbjct: 209 IRSRFLP---KMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDL 268

Query: 142 TLAHVKSHLQVF 153
           TLAHVKSHLQ++
Sbjct: 269 TLAHVKSHLQMY 271

[Close]

BLAST of Cp4.1LG01g19850 vs. ExPASy Swiss-Prot
Match: Q0J235 (Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL9 PE=2 SV=2)

HSP 1 Score: 118.6 bits (296), Expect = 6.3e-26
Identity = 58/85 (68.24%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 68  NHHHHSFASPPPFLRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVELLGGHERAT 127
           +HHHH      PF+ +        +   R +RAPRMRWTSTLHA+FVHAVELLGGHERAT
Sbjct: 292 HHHHHHLHGGQPFVGALASRFMPKLPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERAT 351

Query: 128 PKSVLELMDVKDLTLAHVKSHLQVF 153
           PKSVLELMDVKDLTLAHVKSHLQ++
Sbjct: 352 PKSVLELMDVKDLTLAHVKSHLQMY 376

[Close]

BLAST of Cp4.1LG01g19850 vs. ExPASy Swiss-Prot
Match: Q9FJV5 (Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.7e-24
Identity = 73/140 (52.14%), Postives = 83/140 (59.29%), Query Frame = 0


Query: 31  DLSLQISPPNNGVG-AVH--THKFNQITNGVWLFNHHHNNN------------HHHH--- 90
           DLSLQIS PN   G  +H          +G  L +  H NN            HHH    
Sbjct: 18  DLSLQISLPNYHAGKPLHGGDRSSTSSDSGSSLSDLSHENNFFNKPLLSLGFDHHHQRRS 77

Query: 91  SFASPPPFLRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVL 150
           +   P  + R       S +   R IRAPRMRWTSTLHA FVHAV+LLGGHERATPKSVL
Sbjct: 78  NMFQPQIYGRDFKRSSSSMVGLKRSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVL 137

Query: 151 ELMDVKDLTLAHVKSHLQVF 153
           ELM+VKDLTLAHVKSHLQ++
Sbjct: 138 ELMNVKDLTLAHVKSHLQMY 157

[Close]

BLAST of Cp4.1LG01g19850 vs. ExPASy Swiss-Prot
Match: Q9C616 (Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.5e-23
Identity = 65/106 (61.32%), Postives = 77/106 (72.64%), Query Frame = 0


Query: 47  HTHKFNQITNGVWLFNHHHNNNHHHHSFASPPPFLRSQLDPGRSPMARGRCIRAPRMRWT 106
           + + FN  T+ V   N+H   NHHH +        R++  P R P  R   +RAPRMRWT
Sbjct: 174 NNNSFN--TSSVSNPNYH---NHHHQTLN------RARFMP-RFPAKRS--MRAPRMRWT 233

Query: 107 STLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 153
           +TLHA+FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ++
Sbjct: 234 TTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 265

[Close]

BLAST of Cp4.1LG01g19850 vs. ExPASy Swiss-Prot
Match: Q941I2 (Probable transcription factor KAN3 OS=Arabidopsis thaliana OX=3702 GN=KAN3 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-22
Identity = 60/99 (60.61%), Postives = 67/99 (67.68%), Query Frame = 0


Query: 54  ITNGVWLFNHHHNNNHHHHSFASPPPFLRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQF 113
           ITN    FN H  N H   +   PP F               R +RAPRMRWT+TLHA F
Sbjct: 132 ITNPNCSFNLH--NRHRRQAQPQPPRFTAK------------RGVRAPRMRWTTTLHAHF 191

Query: 114 VHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 153
           VHAV+LLGGHERATPKSVLELMDV+DLTLAHVKSHLQ++
Sbjct: 192 VHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMY 216

[Close]

BLAST of Cp4.1LG01g19850 vs. NCBI nr
Match: XP_022922720.1 (transcription repressor KAN1-like isoform X4 [Cucurbita moschata])

HSP 1 Score: 275 bits (704), Expect = 1.08e-91
Identity = 143/152 (94.08%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MPNIQSFINIQSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWL 60
           MPNIQSFINIQSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWL
Sbjct: 1   MPNIQSFINIQSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWL 60

Query: 61  FNHHHNNNHHHHSFASPPPFLRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVELL 120
           FNH   N+HHHH+FA PPPFLR+QLDPGRSPMARGRC RAPRMRWTSTLHAQFVHAVELL
Sbjct: 61  FNH--RNHHHHHAFALPPPFLRNQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELL 120

Query: 121 GGHERATPKSVLELMDVKDLTLAHVKSHLQVF 152
           GGHERATPKSVLELMDVKDLTLAHVKSHLQ+F
Sbjct: 121 GGHERATPKSVLELMDVKDLTLAHVKSHLQMF 150

[Close]

BLAST of Cp4.1LG01g19850 vs. NCBI nr
Match: XP_022922712.1 (transcription repressor KAN1-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 275 bits (704), Expect = 1.20e-91
Identity = 143/152 (94.08%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MPNIQSFINIQSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWL 60
           MPNIQSFINIQSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWL
Sbjct: 1   MPNIQSFINIQSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWL 60

Query: 61  FNHHHNNNHHHHSFASPPPFLRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVELL 120
           FNH   N+HHHH+FA PPPFLR+QLDPGRSPMARGRC RAPRMRWTSTLHAQFVHAVELL
Sbjct: 61  FNH--RNHHHHHAFALPPPFLRNQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELL 120

Query: 121 GGHERATPKSVLELMDVKDLTLAHVKSHLQVF 152
           GGHERATPKSVLELMDVKDLTLAHVKSHLQ+F
Sbjct: 121 GGHERATPKSVLELMDVKDLTLAHVKSHLQMF 150

[Close]

BLAST of Cp4.1LG01g19850 vs. NCBI nr
Match: XP_022922704.1 (transcription repressor KAN1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 275 bits (704), Expect = 3.28e-91
Identity = 143/152 (94.08%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MPNIQSFINIQSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWL 60
           MPNIQSFINIQSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWL
Sbjct: 1   MPNIQSFINIQSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWL 60

Query: 61  FNHHHNNNHHHHSFASPPPFLRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVELL 120
           FNH   N+HHHH+FA PPPFLR+QLDPGRSPMARGRC RAPRMRWTSTLHAQFVHAVELL
Sbjct: 61  FNH--RNHHHHHAFALPPPFLRNQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELL 120

Query: 121 GGHERATPKSVLELMDVKDLTLAHVKSHLQVF 152
           GGHERATPKSVLELMDVKDLTLAHVKSHLQ+F
Sbjct: 121 GGHERATPKSVLELMDVKDLTLAHVKSHLQMF 150

[Close]

BLAST of Cp4.1LG01g19850 vs. NCBI nr
Match: XP_022922696.1 (transcription repressor KAN1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 275 bits (704), Expect = 3.88e-91
Identity = 143/152 (94.08%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MPNIQSFINIQSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWL 60
           MPNIQSFINIQSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWL
Sbjct: 1   MPNIQSFINIQSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWL 60

Query: 61  FNHHHNNNHHHHSFASPPPFLRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVELL 120
           FNH   N+HHHH+FA PPPFLR+QLDPGRSPMARGRC RAPRMRWTSTLHAQFVHAVELL
Sbjct: 61  FNH--RNHHHHHAFALPPPFLRNQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELL 120

Query: 121 GGHERATPKSVLELMDVKDLTLAHVKSHLQVF 152
           GGHERATPKSVLELMDVKDLTLAHVKSHLQ+F
Sbjct: 121 GGHERATPKSVLELMDVKDLTLAHVKSHLQMF 150

[Close]

BLAST of Cp4.1LG01g19850 vs. NCBI nr
Match: KAG7032715.1 (putative transcription factor KAN2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 271 bits (694), Expect = 4.37e-91
Identity = 146/160 (91.25%), Postives = 148/160 (92.50%), Query Frame = 0


Query: 1   MPNIQSFINIQSSSSSSSSSSSSSSS--FLDLDLSLQISPPNNGVGAVHTHKFNQITNGV 60
           MPNIQSFINIQSSSSSSSSSSSSSSS  FLDLDLSLQISPPNNGVGAVHTHKFNQITNGV
Sbjct: 1   MPNIQSFINIQSSSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGV 60

Query: 61  WLFNHHHNNNHHHHSFASPPPFLRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVE 120
           W FNHH   NHHHH+FA PPPFLR+QLD GRSPMARGRC RAPRMRWTSTLHAQFVHAVE
Sbjct: 61  WFFNHH---NHHHHAFALPPPFLRNQLDLGRSPMARGRCTRAPRMRWTSTLHAQFVHAVE 120

Query: 121 LLGGHERATPKSVLELMDVKDLTLAHVKSHLQVFLKNITL 158
           LLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF  N TL
Sbjct: 121 LLGGHERATPKSVLELMDVKDLTLAHVKSHLQVFFFNTTL 157

[Close]

BLAST of Cp4.1LG01g19850 vs. ExPASy TrEMBL
Match: A0A6J1E9K9 (transcription repressor KAN1-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111430612 PE=4 SV=1)

HSP 1 Score: 275 bits (704), Expect = 5.24e-92
Identity = 143/152 (94.08%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MPNIQSFINIQSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWL 60
           MPNIQSFINIQSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWL
Sbjct: 1   MPNIQSFINIQSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWL 60

Query: 61  FNHHHNNNHHHHSFASPPPFLRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVELL 120
           FNH   N+HHHH+FA PPPFLR+QLDPGRSPMARGRC RAPRMRWTSTLHAQFVHAVELL
Sbjct: 61  FNH--RNHHHHHAFALPPPFLRNQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELL 120

Query: 121 GGHERATPKSVLELMDVKDLTLAHVKSHLQVF 152
           GGHERATPKSVLELMDVKDLTLAHVKSHLQ+F
Sbjct: 121 GGHERATPKSVLELMDVKDLTLAHVKSHLQMF 150

[Close]

BLAST of Cp4.1LG01g19850 vs. ExPASy TrEMBL
Match: A0A6J1E434 (transcription repressor KAN1-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111430612 PE=4 SV=1)

HSP 1 Score: 275 bits (704), Expect = 5.80e-92
Identity = 143/152 (94.08%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MPNIQSFINIQSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWL 60
           MPNIQSFINIQSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWL
Sbjct: 1   MPNIQSFINIQSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWL 60

Query: 61  FNHHHNNNHHHHSFASPPPFLRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVELL 120
           FNH   N+HHHH+FA PPPFLR+QLDPGRSPMARGRC RAPRMRWTSTLHAQFVHAVELL
Sbjct: 61  FNH--RNHHHHHAFALPPPFLRNQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELL 120

Query: 121 GGHERATPKSVLELMDVKDLTLAHVKSHLQVF 152
           GGHERATPKSVLELMDVKDLTLAHVKSHLQ+F
Sbjct: 121 GGHERATPKSVLELMDVKDLTLAHVKSHLQMF 150

[Close]

BLAST of Cp4.1LG01g19850 vs. ExPASy TrEMBL
Match: A0A6J1E464 (transcription repressor KAN1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430612 PE=4 SV=1)

HSP 1 Score: 275 bits (704), Expect = 1.59e-91
Identity = 143/152 (94.08%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MPNIQSFINIQSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWL 60
           MPNIQSFINIQSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWL
Sbjct: 1   MPNIQSFINIQSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWL 60

Query: 61  FNHHHNNNHHHHSFASPPPFLRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVELL 120
           FNH   N+HHHH+FA PPPFLR+QLDPGRSPMARGRC RAPRMRWTSTLHAQFVHAVELL
Sbjct: 61  FNH--RNHHHHHAFALPPPFLRNQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELL 120

Query: 121 GGHERATPKSVLELMDVKDLTLAHVKSHLQVF 152
           GGHERATPKSVLELMDVKDLTLAHVKSHLQ+F
Sbjct: 121 GGHERATPKSVLELMDVKDLTLAHVKSHLQMF 150

[Close]

BLAST of Cp4.1LG01g19850 vs. ExPASy TrEMBL
Match: A0A6J1E4U1 (transcription repressor KAN1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430612 PE=4 SV=1)

HSP 1 Score: 275 bits (704), Expect = 1.88e-91
Identity = 143/152 (94.08%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MPNIQSFINIQSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWL 60
           MPNIQSFINIQSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWL
Sbjct: 1   MPNIQSFINIQSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWL 60

Query: 61  FNHHHNNNHHHHSFASPPPFLRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVELL 120
           FNH   N+HHHH+FA PPPFLR+QLDPGRSPMARGRC RAPRMRWTSTLHAQFVHAVELL
Sbjct: 61  FNH--RNHHHHHAFALPPPFLRNQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELL 120

Query: 121 GGHERATPKSVLELMDVKDLTLAHVKSHLQVF 152
           GGHERATPKSVLELMDVKDLTLAHVKSHLQ+F
Sbjct: 121 GGHERATPKSVLELMDVKDLTLAHVKSHLQMF 150

[Close]

BLAST of Cp4.1LG01g19850 vs. ExPASy TrEMBL
Match: A0A6J1JTN2 (transcription repressor KAN1-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111487408 PE=4 SV=1)

HSP 1 Score: 266 bits (681), Expect = 1.55e-88
Identity = 141/152 (92.76%), Postives = 144/152 (94.74%), Query Frame = 0


Query: 1   MPNIQSFINIQSSSSSSSSSSSSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQITNGVWL 60
           MPNIQSFINIQSSSSSSSSSSSSS SFLDLDLSLQISPPNNGVGAVH HKFNQITNGVWL
Sbjct: 1   MPNIQSFINIQSSSSSSSSSSSSS-SFLDLDLSLQISPPNNGVGAVHNHKFNQITNGVWL 60

Query: 61  FNHHHNNNHHHHSFASPPPFLRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVELL 120
           FNHH   NHHHH+FASP PFL+ QLDPGRSPMARGRC RAPRMRWTSTLHAQFVHAVELL
Sbjct: 61  FNHH---NHHHHAFASPLPFLQHQLDPGRSPMARGRCTRAPRMRWTSTLHAQFVHAVELL 120

Query: 121 GGHERATPKSVLELMDVKDLTLAHVKSHLQVF 152
           GGHERATPKSVLELMDVKDLTLAHVKSHLQ+F
Sbjct: 121 GGHERATPKSVLELMDVKDLTLAHVKSHLQMF 148

[Close]

BLAST of Cp4.1LG01g19850 vs. TAIR 10
Match: AT5G16560.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-28
Identity = 76/132 (57.58%), Postives = 89/132 (67.42%), Query Frame = 0


Query: 22  SSSSSFLDLDLSLQISPPNNGVGAVHTHKFNQI-TNGVWLFNHHHNNNHHHHSFASPPPF 81
           +SSS + +   SLQ SP   GV   H H  NQ    G    +  H++NHHHH        
Sbjct: 149 NSSSGYNNAYRSLQSSPRLKGVPLHHHHHHNQYGVVGSSDSSSPHHHNHHHHG------M 208

Query: 82  LRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVLELMDVKDL 141
           +RS+  P    M   R +RAPRMRWTS+LHA+FVHAVELLGGHERATPKSVLELMDVKDL
Sbjct: 209 IRSRFLP---KMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDL 268

Query: 142 TLAHVKSHLQVF 153
           TLAHVKSHLQ++
Sbjct: 269 TLAHVKSHLQMY 271

[Close]

BLAST of Cp4.1LG01g19850 vs. TAIR 10
Match: AT5G42630.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 111.7 bits (278), Expect = 5.4e-25
Identity = 73/140 (52.14%), Postives = 83/140 (59.29%), Query Frame = 0


Query: 31  DLSLQISPPNNGVG-AVH--THKFNQITNGVWLFNHHHNNN------------HHHH--- 90
           DLSLQIS PN   G  +H          +G  L +  H NN            HHH    
Sbjct: 18  DLSLQISLPNYHAGKPLHGGDRSSTSSDSGSSLSDLSHENNFFNKPLLSLGFDHHHQRRS 77

Query: 91  SFASPPPFLRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVL 150
           +   P  + R       S +   R IRAPRMRWTSTLHA FVHAV+LLGGHERATPKSVL
Sbjct: 78  NMFQPQIYGRDFKRSSSSMVGLKRSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVL 137

Query: 151 ELMDVKDLTLAHVKSHLQVF 153
           ELM+VKDLTLAHVKSHLQ++
Sbjct: 138 ELMNVKDLTLAHVKSHLQMY 157

[Close]

BLAST of Cp4.1LG01g19850 vs. TAIR 10
Match: AT5G42630.2 (Homeodomain-like superfamily protein )

HSP 1 Score: 111.7 bits (278), Expect = 5.4e-25
Identity = 73/140 (52.14%), Postives = 83/140 (59.29%), Query Frame = 0


Query: 31  DLSLQISPPNNGVG-AVH--THKFNQITNGVWLFNHHHNNN------------HHHH--- 90
           DLSLQIS PN   G  +H          +G  L +  H NN            HHH    
Sbjct: 18  DLSLQISLPNYHAGKPLHGGDRSSTSSDSGSSLSDLSHENNFFNKPLLSLGFDHHHQRRS 77

Query: 91  SFASPPPFLRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQFVHAVELLGGHERATPKSVL 150
           +   P  + R       S +   R IRAPRMRWTSTLHA FVHAV+LLGGHERATPKSVL
Sbjct: 78  NMFQPQIYGRDFKRSSSSMVGLKRSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVL 137

Query: 151 ELMDVKDLTLAHVKSHLQVF 153
           ELM+VKDLTLAHVKSHLQ++
Sbjct: 138 ELMNVKDLTLAHVKSHLQMY 157

[Close]

BLAST of Cp4.1LG01g19850 vs. TAIR 10
Match: AT1G32240.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 108.6 bits (270), Expect = 4.6e-24
Identity = 65/106 (61.32%), Postives = 77/106 (72.64%), Query Frame = 0


Query: 47  HTHKFNQITNGVWLFNHHHNNNHHHHSFASPPPFLRSQLDPGRSPMARGRCIRAPRMRWT 106
           + + FN  T+ V   N+H   NHHH +        R++  P R P  R   +RAPRMRWT
Sbjct: 174 NNNSFN--TSSVSNPNYH---NHHHQTLN------RARFMP-RFPAKRS--MRAPRMRWT 233

Query: 107 STLHAQFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 153
           +TLHA+FVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ++
Sbjct: 234 TTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 265

[Close]

BLAST of Cp4.1LG01g19850 vs. TAIR 10
Match: AT4G17695.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 107.8 bits (268), Expect = 7.9e-24
Identity = 60/99 (60.61%), Postives = 67/99 (67.68%), Query Frame = 0


Query: 54  ITNGVWLFNHHHNNNHHHHSFASPPPFLRSQLDPGRSPMARGRCIRAPRMRWTSTLHAQF 113
           ITN    FN H  N H   +   PP F               R +RAPRMRWT+TLHA F
Sbjct: 132 ITNPNCSFNLH--NRHRRQAQPQPPRFTAK------------RGVRAPRMRWTTTLHAHF 191

Query: 114 VHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 153
           VHAV+LLGGHERATPKSVLELMDV+DLTLAHVKSHLQ++
Sbjct: 192 VHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMY 216

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g19850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93WJ9	1.5e-27	57.58	Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1	[more]
Q0J235	6.3e-26	68.24	Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL...	[more]
Q9FJV5	7.7e-24	52.14	Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 ...	[more]
Q9C616	6.5e-23	61.32	Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 ...	[more]
Q941I2	1.1e-22	60.61	Probable transcription factor KAN3 OS=Arabidopsis thaliana OX=3702 GN=KAN3 PE=2 ...	[more]

BLAST of Cp4.1LG01g19850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922720.1	1.08e-91	94.08	transcription repressor KAN1-like isoform X4 [Cucurbita moschata]	[more]
XP_022922712.1	1.20e-91	94.08	transcription repressor KAN1-like isoform X3 [Cucurbita moschata]	[more]
XP_022922704.1	3.28e-91	94.08	transcription repressor KAN1-like isoform X2 [Cucurbita moschata]	[more]
XP_022922696.1	3.88e-91	94.08	transcription repressor KAN1-like isoform X1 [Cucurbita moschata]	[more]
KAG7032715.1	4.37e-91	91.25	putative transcription factor KAN2, partial [Cucurbita argyrosperma subsp. argyr...	[more]

BLAST of Cp4.1LG01g19850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E9K9	5.24e-92	94.08	transcription repressor KAN1-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1E434	5.80e-92	94.08	transcription repressor KAN1-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1E464	1.59e-91	94.08	transcription repressor KAN1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1E4U1	1.88e-91	94.08	transcription repressor KAN1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1JTN2	1.55e-88	92.76	transcription repressor KAN1-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of Cp4.1LG01g19850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16560.1	1.1e-28	57.58	Homeodomain-like superfamily protein	[more]
AT5G42630.1	5.4e-25	52.14	Homeodomain-like superfamily protein	[more]
AT5G42630.2	5.4e-25	52.14	Homeodomain-like superfamily protein	[more]
AT1G32240.1	4.6e-24	61.32	Homeodomain-like superfamily protein	[more]
AT4G17695.1	7.9e-24	60.61	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 101..152 e-value: 3.2E-22 score: 76.6
None	No IPR available	GENE3D	1.10.10.60		coord: 100..155 e-value: 5.7E-24 score: 86.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR31496:SF3	TRANSCRIPTION FACTOR KAN2-RELATED	coord: 30..152
IPR044847	Transcription repressor KANADI	PANTHER	PTHR31496	TRANSCRIPTION FACTOR KAN2-RELATED	coord: 30..152
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 97..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g19850.1	Cp4.1LG01g19850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010158	abaxial cell fate specification
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000976	transcription cis-regulatory region binding
molecular_function	GO:0003677	DNA binding