Cp4.1LG01g18880 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g18880
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG01: 16098070 .. 16099960 (+)
RNA-Seq Expression	Cp4.1LG01g18880
Synteny	Cp4.1LG01g18880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTCTTTTCAGCTGCAATTCTGCTGCTCCTGCTGCTTCTCGGCACTGGTTTGTTTGTTGTTCTGTTCTTTGATCTTTTTGTTTTCTTGTGTTCTTTGAGCTCGGTTAGATGATTAAAATGGTTGATTTGGTCCAGGGATGGCGCCAATGGCTACAGAGGCAAGGACATGCGAGTCTCCGAGCCACCACTTCAGGGGGTTGTGCTTCAGTAAGAACAACTGCGGCCATGTCTGCAAAACAGAGGGCTTCCATGGTGGGCATTGCAGAGGCTTCCGCCGCCGCTGCTTCTGCACAAAGCACTGCGTTTGAGTGGTCTTTGTTGATTCAAATCAGTTGTCTATCAGTTGAAGTGGACACTGATGAGACCTTTATGGGCGTGATATTATAGAATAAAAGTGGCCATCTTTTGGGTATTGTTGTGTTGTGTAAGGGCGTTGTTTCATTTGCTTTGGTTATGGTTTGGATTAATGTAATGTTATTCATATAATGGTGTCTTTCATGCTTCGTTTTGGCTCACTTGAGCTATTCTTTGACACTCTCAGCTTCATTGTATGTTTTAACCTCCTGTCTTCCCATACATTGATATCAAGCTAGAGTATGCAAACTACACTTTTGTCAAACCCCTTCTCCTCCATTTCTGCTTTTGAGTACAGCCCGACATGGCAGTAGGCGTTGATCGCTGAGGTGTAACAGCTAAGCCTACGTGGTTGATCGCTGAGGTGTAACAGCTAAGCCTACGTGATCCATTCCCATGAGAGCCAACGTTCTCTCTGGCACACCACCTGTTGTTTGCAGATATTGTCCCTTTTGGACTTTCCCTTTTGAGTTTCCCCTTGTTTTAACACGTCTGCTAAAAAATGTTTCCACATCCTTATAAGAAATGTTTCGTTCTCCCCTTCAACCAACGTGGAATCTCACAATCCACCCATTTGCCCCTTGGGAACCCAACGTTCTCATTTGCCATACCACTCGGTATCTAGCTCTACCATTTATACCATACAAAATCACAGTTAGCAAATATTATTCTCTTTGGGCTTTCACTTGTCCGACCTCCCACCCGATCAGCTTCTCGTAAACCCTAACCCCTTCTCAGGGCGTAGCCATTGACAATTCCACAGAAAATGCAGTCAGACACTCCAATTTTAAAGCCCTTCATCAGTTCCACAATCTCAAGTGCCTTCTCTAATGACCCTTGTTGAATATACATCAATATGAGCTTTAGAAACATTGCAGGATCTCTCAAAAACTTCTTGGCTTTTGCCTCATTGTAAAGATCTTCAGCCAGTTGAACTTCCTAAATGCTTGCAAAACTGCATATCAAATCCTCTTCAATCCCTTTCTTCCTCATATCTCTAAGAACTCAAGCGACTCGAACACTCGCCCTAATTTCACTAATGATTAGCAAAGAATCCCATCAATTTTTGCCGAAAAGGGCGTAAAATTCACAATCTTACTCTCAACTACTAACCAATCTAGAACAAGTATCAATATCAGTGCAAACACCATAATCATCAAAATCTCAAGAAACTAACAAAATAAAATCCCAATTCTTCAATCGCACTAAGTACCTGATTAGATGCCTCAATGCCGATTTCACGTAATACTCGTAGATCTAATCCTTCAGGGAGTTCAAAAGCTTGAAGAAGAGTCCAAACCGATCTCGGTTAGGGCAATGGGGGATTGTTCGGGGATCGGGGAAAGGCTACCGGAGGAATTTAGATGAAGAGATCGAAGATCGAGAAAAAGAGAGCGAGATTAGTGGCTGAGATGATAGGATTACCTGAAAGAGCTCAATGGAGGCGGTGACCAGTCAGTAGAGCCGGTAATGGCCATCGGAGATAAAAGTCCGAAGGCAGGGGAGGAGGATCAGAATGCTATGCGTATGTA

mRNA sequence

ATGAAGTTCTTTTCAGCTGCAATTCTGCTGCTCCTGCTGCTTCTCGGCACTGGTTTGTTTGTTGGATGGCGCCAATGGCTACAGAGGCAAGGACATGCGAGTCTCCGAGCCACCACTTCAGGGGGTTGTGCTTCAGTAAGAACAACTGCGGCCATGTCTGCAAAACAGAGGGCTTCCATGGTGGGCATTGCAGAGGCTTCCGCCGCCGCTGCTTCTGCACAAAGCACTGCGTTTGAGTGGTCTTTGTTGATTCAAATCAGTTGTCTATCAGTTGAAGTGGACACTGATGAGACCTTTATGGGCGTGATATTATAGAATAAAAGTGGCCATCTTTTGGGTATTGTTGTGTTGTGTAAGGGCGTTGTTTCATTTGCTTTGGTTATGGTTTGGATTAATGTAATGTTATTCATATAATGGTGTCTTTCATGCTTCGTTTTGGCTCACTTGAGCTATTCTTTGACACTCTCAGCTTCATTGTATGTTTTAACCTCCTGTCTTCCCATACATTGATATCAAGCTAGAGTATGCAAACTACACTTTTGTCAAACCCCTTCTCCTCCATTTCTGCTTTTGAGTACAGCCCGACATGGCAGTAGGCGTTGATCGCTGAGGTGTAACAGCTAAGCCTACGTGGTTGATCGCTGAGGTGTAACAGCTAAGCCTACGTGATCCATTCCCATGAGAGCCAACGTTCTCTCTGGCACACCACCTGTTGTTTGCAGATATTGTCCCTTTTGGACTTTCCCTTTTGAGTTTCCCCTTGTTTTAACACGTCTGCTAAAAAATGTTTCCACATCCTTATAAGAAATGTTTCGTTCTCCCCTTCAACCAACGTGGAATCTCACAATCCACCCATTTGCCCCTTGGGAACCCAACGTTCTCATTTGCCATACCACTCGGTATCTAGCTCTACCATTTATACCATACAAAATCACAGTTAGCAAATATTATTCTCTTTGGGCTTTCACTTGTCCGACCTCCCACCCGATCAGCTTCTCGTAAACCCTAACCCCTTCTCAGGGCGTAGCCATTGACAATTCCACAGAAAATGCAGTCAGACACTCCAATTTTAAAGCCCTTCATCAGTTCCACAATCTCAAGTGCCTTCTCTAATGACCCTTGTTGAATATACATCAATATGAGCTTTAGAAACATTGCAGGATCTCTCAAAAACTTCTTGGCTTTTGCCTCATTGTAAAGATCTTCAGCCAGTTGAACTTCCTAAATGCTTGCAAAACTGCATATCAAATCCTCTTCAATCCCTTTCTTCCTCATATCTCTAAGAACTCAAGCGACTCGAACACTCGCCCTAATTTCACTAATGATTAGCAAAGAATCCCATCAATTTTTGCCGAAAAGGGCGTAAAATTCACAATCTTACTCTCAACTACTAACCAATCTAGAACAAGTATCAATATCAGTGCAAACACCATAATCATCAAAATCTCAAGAAACTAACAAAATAAAATCCCAATTCTTCAATCGCACTAAGTACCTGATTAGATGCCTCAATGCCGATTTCACGTAATACTCGTAGATCTAATCCTTCAGGGAGTTCAAAAGCTTGAAGAAGAGTCCAAACCGATCTCGGTTAGGGCAATGGGGGATTGTTCGGGGATCGGGGAAAGGCTACCGGAGGAATTTAGATGAAGAGATCGAAGATCGAGAAAAAGAGAGCGAGATTAGTGGCTGAGATGATAGGATTACCTGAAAGAGCTCAATGGAGGCGGTGACCAGTCAGTAGAGCCGGTAATGGCCATCGGAGATAAAAGTCCGAAGGCAGGGGAGGAGGATCAGAATGCTATGCGTATGTA

Coding sequence (CDS)

ATGAAGTTCTTTTCAGCTGCAATTCTGCTGCTCCTGCTGCTTCTCGGCACTGGTTTGTTTGTTGGATGGCGCCAATGGCTACAGAGGCAAGGACATGCGAGTCTCCGAGCCACCACTTCAGGGGGTTGTGCTTCAGTAAGAACAACTGCGGCCATGTCTGCAAAACAGAGGGCTTCCATGGTGGGCATTGCAGAGGCTTCCGCCGCCGCTGCTTCTGCACAAAGCACTGCGTTTGAGTGGTCTTTGTTGATTCAAATCAGTTGTCTATCAGTTGAAGTGGACACTGATGAGACCTTTATGGGCGTGATATTATAG

Protein sequence

MKFFSAAILLLLLLLGTGLFVGWRQWLQRQGHASLRATTSGGCASVRTTAAMSAKQRASMVGIAEASAAAASAQSTAFEWSLLIQISCLSVEVDTDETFMGVIL

Homology

[Close]

BLAST of Cp4.1LG01g18880 vs. ExPASy TrEMBL
Match: A0A0A0KLL1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G114560 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 2.05e-06
Identity = 32/60 (53.33%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 22 GWRQWLQRQGHASLRATTSGGCASVRTTAAMSAKQRASMVGIAEASAAAASAQSTAFEWS 81
          GWRQW +R+G+A+LRAT S  CA V     +SA+QR   V  A   A AA AQST FE S
Sbjct: 10 GWRQWWRRRGYANLRATISRVCALVTQIVGISARQRGLAVAFAGDFAVAAFAQSTVFEIS 69

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g18880 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g18880 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g18880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLL1	2.05e-06	53.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G114560 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g18880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g18880.1	Cp4.1LG01g18880.1	mRNA