Cp4.1LG01g18860 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g18860
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein SLOW GREEN 1, chloroplastic
Location	Cp4.1LG01: 16113783 .. 16114793 (+)
RNA-Seq Expression	Cp4.1LG01g18860
Synteny	Cp4.1LG01g18860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTTCACATTTGCTTCCATGTCTTCACCCTCTTCTTCTTCTCTTTCATCTATCTTTATTTCTTCTAAATCGAAACCAGTTCCACCCCCGAATCTCCGCTTCGTCGCTCCCCTTTCTCGCACTTCTGTTTCTTTGCATCGTTTTAGGGTTAGGGCTTCGTCTGTTCCCGTTTCCAGGAACCACCCTGTTGTTCAATGCTTCAAGAACTACGCCAGAGCTGCGATTCTCATTGGTGCTGCCGCTACCATGGTTGGGAAATTTTCGCATTTGCCTGCCAGAGCGGAGTCGCCGGTGGCTGTAGAGGAGGAAGCTTCGAGAATGGAAGAAGAACAGCGGATTGTTGAGGACTCGGACCAAGACGGGCAGCAATCCTCACCGTTGAATGATTTTCTCGAATCGAATTCTGAAGCTGTTGAGGCTCTTAAATCGCTCCTGCAGCAGAAACTTGAAAATAGCGAGGATGAAGAAGCGCTGAAAATCTTGAATCAATTGGTATCTGCTCAGTCGTCGGTGACCGAGTGGAAATTTCTCAAGGCCAGATTGCTCGGCGAAATGGGCAAAACGGAAAATGCACGAGAAGTTTTCGAAGAGATTTTGGCTGAGAATCCGTTGTCATTCGAAGCATTGTTTGAAAACGCATTGTTAATGGATCGTTGTGGGGAAGGGGAGGCAGTGCTCCTGCGCTTAGAACGGGCTTTGAGAATTGCTGAAAACGAAAAGAAGGCGAAGGAGGCCAGGGATGTGAGGTTGATAATGGCTCAAATACAGTTCTTGCAGAAGAATGTAGAGGGGGCCTTGACGAGTTACAAAGAATTGATCAATGAGGATCCTAGCGACTTTAGGCCATACTTCTGTCAAGGAATGATCTACAGCTTGCTTGACAAGAACGAGGAAGCCAGACAGCAATTCAGCAAGTACAGGGAGCTCTCACCAAAGAAATTTGAGGTTGATGGGTACCTACGGACTCCATTGTCAAGGATGAAAATCTTCGGATCAGATGAGAACTAA

mRNA sequence

ATGAGCTTCACATTTGCTTCCATGTCTTCACCCTCTTCTTCTTCTCTTTCATCTATCTTTATTTCTTCTAAATCGAAACCAGTTCCACCCCCGAATCTCCGCTTCGTCGCTCCCCTTTCTCGCACTTCTGTTTCTTTGCATCGTTTTAGGGTTAGGGCTTCGTCTGTTCCCGTTTCCAGGAACCACCCTGTTGTTCAATGCTTCAAGAACTACGCCAGAGCTGCGATTCTCATTGGTGCTGCCGCTACCATGGTTGGGAAATTTTCGCATTTGCCTGCCAGAGCGGAGTCGCCGGTGGCTGTAGAGGAGGAAGCTTCGAGAATGGAAGAAGAACAGCGGATTGTTGAGGACTCGGACCAAGACGGGCAGCAATCCTCACCGTTGAATGATTTTCTCGAATCGAATTCTGAAGCTGTTGAGGCTCTTAAATCGCTCCTGCAGCAGAAACTTGAAAATAGCGAGGATGAAGAAGCGCTGAAAATCTTGAATCAATTGGTATCTGCTCAGTCGTCGGTGACCGAGTGGAAATTTCTCAAGGCCAGATTGCTCGGCGAAATGGGCAAAACGGAAAATGCACGAGAAGTTTTCGAAGAGATTTTGGCTGAGAATCCGTTGTCATTCGAAGCATTGTTTGAAAACGCATTGTTAATGGATCGTTGTGGGGAAGGGGAGGCAGTGCTCCTGCGCTTAGAACGGGCTTTGAGAATTGCTGAAAACGAAAAGAAGGCGAAGGAGGCCAGGGATGTGAGGTTGATAATGGCTCAAATACAGTTCTTGCAGAAGAATGTAGAGGGGGCCTTGACGAGTTACAAAGAATTGATCAATGAGGATCCTAGCGACTTTAGGCCATACTTCTGTCAAGGAATGATCTACAGCTTGCTTGACAAGAACGAGGAAGCCAGACAGCAATTCAGCAAGTACAGGGAGCTCTCACCAAAGAAATTTGAGGTTGATGGGTACCTACGGACTCCATTGTCAAGGATGAAAATCTTCGGATCAGATGAGAACTAA

Coding sequence (CDS)

ATGAGCTTCACATTTGCTTCCATGTCTTCACCCTCTTCTTCTTCTCTTTCATCTATCTTTATTTCTTCTAAATCGAAACCAGTTCCACCCCCGAATCTCCGCTTCGTCGCTCCCCTTTCTCGCACTTCTGTTTCTTTGCATCGTTTTAGGGTTAGGGCTTCGTCTGTTCCCGTTTCCAGGAACCACCCTGTTGTTCAATGCTTCAAGAACTACGCCAGAGCTGCGATTCTCATTGGTGCTGCCGCTACCATGGTTGGGAAATTTTCGCATTTGCCTGCCAGAGCGGAGTCGCCGGTGGCTGTAGAGGAGGAAGCTTCGAGAATGGAAGAAGAACAGCGGATTGTTGAGGACTCGGACCAAGACGGGCAGCAATCCTCACCGTTGAATGATTTTCTCGAATCGAATTCTGAAGCTGTTGAGGCTCTTAAATCGCTCCTGCAGCAGAAACTTGAAAATAGCGAGGATGAAGAAGCGCTGAAAATCTTGAATCAATTGGTATCTGCTCAGTCGTCGGTGACCGAGTGGAAATTTCTCAAGGCCAGATTGCTCGGCGAAATGGGCAAAACGGAAAATGCACGAGAAGTTTTCGAAGAGATTTTGGCTGAGAATCCGTTGTCATTCGAAGCATTGTTTGAAAACGCATTGTTAATGGATCGTTGTGGGGAAGGGGAGGCAGTGCTCCTGCGCTTAGAACGGGCTTTGAGAATTGCTGAAAACGAAAAGAAGGCGAAGGAGGCCAGGGATGTGAGGTTGATAATGGCTCAAATACAGTTCTTGCAGAAGAATGTAGAGGGGGCCTTGACGAGTTACAAAGAATTGATCAATGAGGATCCTAGCGACTTTAGGCCATACTTCTGTCAAGGAATGATCTACAGCTTGCTTGACAAGAACGAGGAAGCCAGACAGCAATTCAGCAAGTACAGGGAGCTCTCACCAAAGAAATTTGAGGTTGATGGGTACCTACGGACTCCATTGTCAAGGATGAAAATCTTCGGATCAGATGAGAACTAA

Protein sequence

MSFTFASMSSPSSSSLSSIFISSKSKPVPPPNLRFVAPLSRTSVSLHRFRVRASSVPVSRNHPVVQCFKNYARAAILIGAAATMVGKFSHLPARAESPVAVEEEASRMEEEQRIVEDSDQDGQQSSPLNDFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVTEWKFLKARLLGEMGKTENAREVFEEILAENPLSFEALFENALLMDRCGEGEAVLLRLERALRIAENEKKAKEARDVRLIMAQIQFLQKNVEGALTSYKELINEDPSDFRPYFCQGMIYSLLDKNEEARQQFSKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN

Homology

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BLAST of Cp4.1LG01g18860 vs. ExPASy Swiss-Prot
Match: Q9LS48 (protein SLOW GREEN 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SG1 PE=1 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 1.1e-93
Identity = 198/327 (60.55%), Postives = 240/327 (73.39%), Query Frame = 0


Query: 9   SSPSSSSLSSIFISSKSKPVPPPNLRFVAPLSRTSVSLHRFRVRASSVPVSRNHPVVQCF 68
           S  +SSSL S F++ K+ PV  P +            L   R+RASS   S  +   + F
Sbjct: 4   SLSASSSLVSSFVAVKATPVTGPLI--------PRRDLLSIRIRASSNQNSSGYCFPEKF 63

Query: 69  KNYARAAILIGAAATMVGKFSHLPARAESPVAVEEEASRMEEEQRIVEDSDQDGQQSSPL 128
           K++A++AILIGAA +M GKFS LP +AESPV   E+     +E+++ E         +PL
Sbjct: 64  KSFAKSAILIGAAVSMTGKFSTLPVKAESPVTTIEKTYEEVKEEKLSE--------ITPL 123

Query: 129 NDFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVTEWKFLKARLLGEMGK 188
           ++ L+S  EAVE L+SLLQQKLE  EDEEALK+L +LV+AQ   TEWKFL ARLLGEMG+
Sbjct: 124 SELLDSTPEAVETLRSLLQQKLEKGEDEEALKLLERLVAAQPEETEWKFLMARLLGEMGR 183

Query: 189 TENAREVFEEILAENPLSFEALFENALLMDRCGEGEAVLLRLERALRIAENEKKAKEARD 248
            ENAR++FEEIL  NPLSFEALFENALLMDR GEG AVL RLE AL +AE E   KEARD
Sbjct: 184 PENARQMFEEILQRNPLSFEALFENALLMDRSGEGNAVLQRLEDALAVAEAEYLVKEARD 243

Query: 249 VRLIMAQIQFLQKNVEGALTSYKELINEDPSDFRPYFCQGMIYSLLDKNEEARQQFSKYR 308
           VRLI+AQI FLQKNV+ AL SY++L  EDP DFRPYFC+GMIYSLLDKN EA++QF+KYR
Sbjct: 244 VRLIIAQIHFLQKNVDEALKSYEQLTKEDPKDFRPYFCRGMIYSLLDKNVEAKEQFAKYR 303

Query: 309 ELSPKKFEVDGYLRTPLSRMKIFGSDE 336
           ELSPKKFEV+GYLRTPLS+MK+FG  E
Sbjct: 304 ELSPKKFEVEGYLRTPLSKMKLFGGSE 314

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BLAST of Cp4.1LG01g18860 vs. NCBI nr
Match: XP_023512073.1 (protein SLOW GREEN 1, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023512081.1 protein SLOW GREEN 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 623 bits (1606), Expect = 3.59e-224
Identity = 336/336 (100.00%), Postives = 336/336 (100.00%), Query Frame = 0


Query: 1   MSFTFASMSSPSSSSLSSIFISSKSKPVPPPNLRFVAPLSRTSVSLHRFRVRASSVPVSR 60
           MSFTFASMSSPSSSSLSSIFISSKSKPVPPPNLRFVAPLSRTSVSLHRFRVRASSVPVSR
Sbjct: 1   MSFTFASMSSPSSSSLSSIFISSKSKPVPPPNLRFVAPLSRTSVSLHRFRVRASSVPVSR 60

Query: 61  NHPVVQCFKNYARAAILIGAAATMVGKFSHLPARAESPVAVEEEASRMEEEQRIVEDSDQ 120
           NHPVVQCFKNYARAAILIGAAATMVGKFSHLPARAESPVAVEEEASRMEEEQRIVEDSDQ
Sbjct: 61  NHPVVQCFKNYARAAILIGAAATMVGKFSHLPARAESPVAVEEEASRMEEEQRIVEDSDQ 120

Query: 121 DGQQSSPLNDFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVTEWKFLKA 180
           DGQQSSPLNDFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVTEWKFLKA
Sbjct: 121 DGQQSSPLNDFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVTEWKFLKA 180

Query: 181 RLLGEMGKTENAREVFEEILAENPLSFEALFENALLMDRCGEGEAVLLRLERALRIAENE 240
           RLLGEMGKTENAREVFEEILAENPLSFEALFENALLMDRCGEGEAVLLRLERALRIAENE
Sbjct: 181 RLLGEMGKTENAREVFEEILAENPLSFEALFENALLMDRCGEGEAVLLRLERALRIAENE 240

Query: 241 KKAKEARDVRLIMAQIQFLQKNVEGALTSYKELINEDPSDFRPYFCQGMIYSLLDKNEEA 300
           KKAKEARDVRLIMAQIQFLQKNVEGALTSYKELINEDPSDFRPYFCQGMIYSLLDKNEEA
Sbjct: 241 KKAKEARDVRLIMAQIQFLQKNVEGALTSYKELINEDPSDFRPYFCQGMIYSLLDKNEEA 300

Query: 301 RQQFSKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 336
           RQQFSKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN
Sbjct: 301 RQQFSKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 336

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BLAST of Cp4.1LG01g18860 vs. NCBI nr
Match: KAG6601916.1 (protein SLOW GREEN 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032610.1 protein SLOW GREEN 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 613 bits (1581), Expect = 2.32e-220
Identity = 331/336 (98.51%), Postives = 333/336 (99.11%), Query Frame = 0


Query: 1   MSFTFASMSSPSSSSLSSIFISSKSKPVPPPNLRFVAPLSRTSVSLHRFRVRASSVPVSR 60
           MSFTFASMSSPSSSSLSSIFISSKSKPV PPNLRF APLSRTSVS+HRFRVRASSVPVSR
Sbjct: 1   MSFTFASMSSPSSSSLSSIFISSKSKPVTPPNLRFAAPLSRTSVSVHRFRVRASSVPVSR 60

Query: 61  NHPVVQCFKNYARAAILIGAAATMVGKFSHLPARAESPVAVEEEASRMEEEQRIVEDSDQ 120
           NHPVVQCFKNYARAAILIGAAATMVGKFSHLPARAESPVAVEEEASRMEEEQRIVEDSDQ
Sbjct: 61  NHPVVQCFKNYARAAILIGAAATMVGKFSHLPARAESPVAVEEEASRMEEEQRIVEDSDQ 120

Query: 121 DGQQSSPLNDFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVTEWKFLKA 180
           DGQQSSPLNDFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVTEWKFLKA
Sbjct: 121 DGQQSSPLNDFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVTEWKFLKA 180

Query: 181 RLLGEMGKTENAREVFEEILAENPLSFEALFENALLMDRCGEGEAVLLRLERALRIAENE 240
           RLLGEMGKTENAREVFEEILAENPLSFEALFENALLMDRCGEGEAVLLRLE+ALRIAENE
Sbjct: 181 RLLGEMGKTENAREVFEEILAENPLSFEALFENALLMDRCGEGEAVLLRLEQALRIAENE 240

Query: 241 KKAKEARDVRLIMAQIQFLQKNVEGALTSYKELINEDPSDFRPYFCQGMIYSLLDKNEEA 300
           KKAKEARDVRLIMAQIQFLQKNVEGALTSYKELI EDPSDFRPYFCQGMIYSLLDKNEEA
Sbjct: 241 KKAKEARDVRLIMAQIQFLQKNVEGALTSYKELIKEDPSDFRPYFCQGMIYSLLDKNEEA 300

Query: 301 RQQFSKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 336
           RQQFSKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN
Sbjct: 301 RQQFSKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 336

[Close]

BLAST of Cp4.1LG01g18860 vs. NCBI nr
Match: XP_022956910.1 (protein SLOW GREEN 1, chloroplastic [Cucurbita moschata] >XP_022956918.1 protein SLOW GREEN 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 612 bits (1579), Expect = 4.68e-220
Identity = 329/336 (97.92%), Postives = 333/336 (99.11%), Query Frame = 0


Query: 1   MSFTFASMSSPSSSSLSSIFISSKSKPVPPPNLRFVAPLSRTSVSLHRFRVRASSVPVSR 60
           MSFTFASMSSPSSSSLSSIFISSKSKPVPPPNLRF AP+SRTSVS+HRFRVRASSVPVSR
Sbjct: 1   MSFTFASMSSPSSSSLSSIFISSKSKPVPPPNLRFAAPISRTSVSVHRFRVRASSVPVSR 60

Query: 61  NHPVVQCFKNYARAAILIGAAATMVGKFSHLPARAESPVAVEEEASRMEEEQRIVEDSDQ 120
           NHPVVQCFKNYARAAILIGAAATMVGKFSHLPARAESPV VEEEASR+EEEQRIVEDSDQ
Sbjct: 61  NHPVVQCFKNYARAAILIGAAATMVGKFSHLPARAESPVVVEEEASRIEEEQRIVEDSDQ 120

Query: 121 DGQQSSPLNDFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVTEWKFLKA 180
           DGQQSSPLNDFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVTEWKFLKA
Sbjct: 121 DGQQSSPLNDFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVTEWKFLKA 180

Query: 181 RLLGEMGKTENAREVFEEILAENPLSFEALFENALLMDRCGEGEAVLLRLERALRIAENE 240
           RLLGEMGKTENAREVFEEILAENPLSFEALFENALLMDRCGEGEAVLLRLE+ALRIAENE
Sbjct: 181 RLLGEMGKTENAREVFEEILAENPLSFEALFENALLMDRCGEGEAVLLRLEQALRIAENE 240

Query: 241 KKAKEARDVRLIMAQIQFLQKNVEGALTSYKELINEDPSDFRPYFCQGMIYSLLDKNEEA 300
           KKAKEARDVRLIMAQIQFLQKNVEGALTSYKELI EDPSDFRPYFCQGMIYSLLDKNEEA
Sbjct: 241 KKAKEARDVRLIMAQIQFLQKNVEGALTSYKELIKEDPSDFRPYFCQGMIYSLLDKNEEA 300

Query: 301 RQQFSKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 336
           RQQFSKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN
Sbjct: 301 RQQFSKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 336

[Close]

BLAST of Cp4.1LG01g18860 vs. NCBI nr
Match: XP_022990705.1 (protein SLOW GREEN 1, chloroplastic [Cucurbita maxima] >XP_022990706.1 protein SLOW GREEN 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 601 bits (1550), Expect = 1.27e-215
Identity = 327/337 (97.03%), Postives = 331/337 (98.22%), Query Frame = 0


Query: 1   MSFTFASMSSPSSSS-LSSIFISSKSKPVPPPNLRFVAPLSRTSVSLHRFRVRASSVPVS 60
           MSFTFASMSSPSSSS LSSIF SSKSKPVPPPNLRF APLSRTSVS++RFRVRASSVPVS
Sbjct: 1   MSFTFASMSSPSSSSSLSSIFSSSKSKPVPPPNLRFAAPLSRTSVSVYRFRVRASSVPVS 60

Query: 61  RNHPVVQCFKNYARAAILIGAAATMVGKFSHLPARAESPVAVEEEASRMEEEQRIVEDSD 120
           RNHPVVQCFKNYARAAILIGAAATMVGKFSHLPARAESPVAVEEEASRMEEEQRIVEDSD
Sbjct: 61  RNHPVVQCFKNYARAAILIGAAATMVGKFSHLPARAESPVAVEEEASRMEEEQRIVEDSD 120

Query: 121 QDGQQSSPLNDFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVTEWKFLK 180
           QD QQSSPLNDFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVTEWKFLK
Sbjct: 121 QDRQQSSPLNDFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVTEWKFLK 180

Query: 181 ARLLGEMGKTENAREVFEEILAENPLSFEALFENALLMDRCGEGEAVLLRLERALRIAEN 240
           ARLLGEMGKTENAREVFEEILAENPLSFEALFENALLMDRCGEGEAVLLRLE+ALRIAEN
Sbjct: 181 ARLLGEMGKTENAREVFEEILAENPLSFEALFENALLMDRCGEGEAVLLRLEQALRIAEN 240

Query: 241 EKKAKEARDVRLIMAQIQFLQKNVEGALTSYKELINEDPSDFRPYFCQGMIYSLLDKNEE 300
           EKKAKEARDVRLIMAQIQFLQKNVEGALTSYKELI EDPSDFRPYFCQGMIYSLLDKNEE
Sbjct: 241 EKKAKEARDVRLIMAQIQFLQKNVEGALTSYKELIKEDPSDFRPYFCQGMIYSLLDKNEE 300

Query: 301 ARQQFSKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 336
           ARQQF KYRELSPKK+EVDGYLRTPLSRMKIFGSDEN
Sbjct: 301 ARQQFGKYRELSPKKYEVDGYLRTPLSRMKIFGSDEN 337

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BLAST of Cp4.1LG01g18860 vs. NCBI nr
Match: XP_038876236.1 (protein SLOW GREEN 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 539 bits (1388), Expect = 6.51e-191
Identity = 297/339 (87.61%), Postives = 311/339 (91.74%), Query Frame = 0


Query: 1   MSFTFASMSSPSSSSLSSIFI--SSKSKPVP-PPNLRFVAPLSRTSVSLHRFRVRASSVP 60
           MS TFAS+SSP+SSSLSSIF   +SKSK V  P NLRF APLSR SVS+H FRVRASSVP
Sbjct: 1   MSSTFASISSPTSSSLSSIFNFNASKSKMVSLPNNLRFAAPLSRNSVSVHPFRVRASSVP 60

Query: 61  VSRNHPVVQCFKNYARAAILIGAAATMVGKFSHLPARAESPVAVEEEASRMEEEQRIVED 120
           VSRNHPVVQC +NYARAAILIGAAATMVGKFSHLPARAESP AV EEASRMEE+QRI ED
Sbjct: 61  VSRNHPVVQCLRNYARAAILIGAAATMVGKFSHLPARAESPAAVAEEASRMEEDQRIAED 120

Query: 121 SDQDGQQSSPLNDFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVTEWKF 180
           SDQ+G+QSSPLNDFLESNSEA+EALKSLLQQKLEN EDEEALKIL QLVSAQ SVTEWKF
Sbjct: 121 SDQEGKQSSPLNDFLESNSEAIEALKSLLQQKLENGEDEEALKILKQLVSAQPSVTEWKF 180

Query: 181 LKARLLGEMGKTENAREVFEEILAENPLSFEALFENALLMDRCGEGEAVLLRLERALRIA 240
           L ARLLGEMGKTENAREVFEEILA NPLSFEALFENALLMDRCGEGEAVL RLE AL+IA
Sbjct: 181 LMARLLGEMGKTENAREVFEEILAVNPLSFEALFENALLMDRCGEGEAVLRRLEEALKIA 240

Query: 241 ENEKKAKEARDVRLIMAQIQFLQKNVEGALTSYKELINEDPSDFRPYFCQGMIYSLLDKN 300
           ENE K KEARDV+LIMAQIQFLQKNVE AL SYKEL+ EDPSDFRPYFCQGMIYSLLDKN
Sbjct: 241 ENENKVKEARDVKLIMAQIQFLQKNVEEALKSYKELVKEDPSDFRPYFCQGMIYSLLDKN 300

Query: 301 EEARQQFSKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 336
            EA+QQF+KYRELSPKKFEVDGYLRTPLSRMKIFGSDEN
Sbjct: 301 MEAKQQFAKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 339

[Close]

BLAST of Cp4.1LG01g18860 vs. ExPASy TrEMBL
Match: A0A6J1GYL7 (protein SLOW GREEN 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111458452 PE=4 SV=1)

HSP 1 Score: 612 bits (1579), Expect = 2.27e-220
Identity = 329/336 (97.92%), Postives = 333/336 (99.11%), Query Frame = 0


Query: 1   MSFTFASMSSPSSSSLSSIFISSKSKPVPPPNLRFVAPLSRTSVSLHRFRVRASSVPVSR 60
           MSFTFASMSSPSSSSLSSIFISSKSKPVPPPNLRF AP+SRTSVS+HRFRVRASSVPVSR
Sbjct: 1   MSFTFASMSSPSSSSLSSIFISSKSKPVPPPNLRFAAPISRTSVSVHRFRVRASSVPVSR 60

Query: 61  NHPVVQCFKNYARAAILIGAAATMVGKFSHLPARAESPVAVEEEASRMEEEQRIVEDSDQ 120
           NHPVVQCFKNYARAAILIGAAATMVGKFSHLPARAESPV VEEEASR+EEEQRIVEDSDQ
Sbjct: 61  NHPVVQCFKNYARAAILIGAAATMVGKFSHLPARAESPVVVEEEASRIEEEQRIVEDSDQ 120

Query: 121 DGQQSSPLNDFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVTEWKFLKA 180
           DGQQSSPLNDFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVTEWKFLKA
Sbjct: 121 DGQQSSPLNDFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVTEWKFLKA 180

Query: 181 RLLGEMGKTENAREVFEEILAENPLSFEALFENALLMDRCGEGEAVLLRLERALRIAENE 240
           RLLGEMGKTENAREVFEEILAENPLSFEALFENALLMDRCGEGEAVLLRLE+ALRIAENE
Sbjct: 181 RLLGEMGKTENAREVFEEILAENPLSFEALFENALLMDRCGEGEAVLLRLEQALRIAENE 240

Query: 241 KKAKEARDVRLIMAQIQFLQKNVEGALTSYKELINEDPSDFRPYFCQGMIYSLLDKNEEA 300
           KKAKEARDVRLIMAQIQFLQKNVEGALTSYKELI EDPSDFRPYFCQGMIYSLLDKNEEA
Sbjct: 241 KKAKEARDVRLIMAQIQFLQKNVEGALTSYKELIKEDPSDFRPYFCQGMIYSLLDKNEEA 300

Query: 301 RQQFSKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 336
           RQQFSKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN
Sbjct: 301 RQQFSKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 336

[Close]

BLAST of Cp4.1LG01g18860 vs. ExPASy TrEMBL
Match: A0A6J1JQU3 (protein SLOW GREEN 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487518 PE=4 SV=1)

HSP 1 Score: 601 bits (1550), Expect = 6.17e-216
Identity = 327/337 (97.03%), Postives = 331/337 (98.22%), Query Frame = 0


Query: 1   MSFTFASMSSPSSSS-LSSIFISSKSKPVPPPNLRFVAPLSRTSVSLHRFRVRASSVPVS 60
           MSFTFASMSSPSSSS LSSIF SSKSKPVPPPNLRF APLSRTSVS++RFRVRASSVPVS
Sbjct: 1   MSFTFASMSSPSSSSSLSSIFSSSKSKPVPPPNLRFAAPLSRTSVSVYRFRVRASSVPVS 60

Query: 61  RNHPVVQCFKNYARAAILIGAAATMVGKFSHLPARAESPVAVEEEASRMEEEQRIVEDSD 120
           RNHPVVQCFKNYARAAILIGAAATMVGKFSHLPARAESPVAVEEEASRMEEEQRIVEDSD
Sbjct: 61  RNHPVVQCFKNYARAAILIGAAATMVGKFSHLPARAESPVAVEEEASRMEEEQRIVEDSD 120

Query: 121 QDGQQSSPLNDFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVTEWKFLK 180
           QD QQSSPLNDFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVTEWKFLK
Sbjct: 121 QDRQQSSPLNDFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVTEWKFLK 180

Query: 181 ARLLGEMGKTENAREVFEEILAENPLSFEALFENALLMDRCGEGEAVLLRLERALRIAEN 240
           ARLLGEMGKTENAREVFEEILAENPLSFEALFENALLMDRCGEGEAVLLRLE+ALRIAEN
Sbjct: 181 ARLLGEMGKTENAREVFEEILAENPLSFEALFENALLMDRCGEGEAVLLRLEQALRIAEN 240

Query: 241 EKKAKEARDVRLIMAQIQFLQKNVEGALTSYKELINEDPSDFRPYFCQGMIYSLLDKNEE 300
           EKKAKEARDVRLIMAQIQFLQKNVEGALTSYKELI EDPSDFRPYFCQGMIYSLLDKNEE
Sbjct: 241 EKKAKEARDVRLIMAQIQFLQKNVEGALTSYKELIKEDPSDFRPYFCQGMIYSLLDKNEE 300

Query: 301 ARQQFSKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 336
           ARQQF KYRELSPKK+EVDGYLRTPLSRMKIFGSDEN
Sbjct: 301 ARQQFGKYRELSPKKYEVDGYLRTPLSRMKIFGSDEN 337

[Close]

BLAST of Cp4.1LG01g18860 vs. ExPASy TrEMBL
Match: A0A6J1CXB6 (protein SLOW GREEN 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015681 PE=4 SV=1)

HSP 1 Score: 533 bits (1374), Expect = 4.59e-189
Identity = 294/340 (86.47%), Postives = 310/340 (91.18%), Query Frame = 0


Query: 1   MSFTFASMSSPSSSSLSSIFI--SSKSKPVPPPNLRFVAPLSRTSVSLHRFRVRASSVPV 60
           MS TFA+MSSPSSSSLSSIF   +SK KPV PPNLRF APLSR SV + RFRVRASS P+
Sbjct: 1   MSSTFAAMSSPSSSSLSSIFHFNASKPKPVSPPNLRFAAPLSRNSVYVQRFRVRASSAPL 60

Query: 61  ---SRNHPVVQCFKNYARAAILIGAAATMVGKFSHLPARAESPVAVEEEASRMEEEQRIV 120
              SRNHPVVQC +NYARAAILIGAAATMVGKFSHLPARAESP AV EEASRMEE++++V
Sbjct: 61  PDASRNHPVVQCLRNYARAAILIGAAATMVGKFSHLPARAESPAAVAEEASRMEEDRQVV 120

Query: 121 EDSDQDGQQSSPLNDFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVTEW 180
           EDSD+D QQSSPLNDFLESNSEAVEALKSLLQQKLEN EDEEALKIL QLVSAQ SVTEW
Sbjct: 121 EDSDRDRQQSSPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSAQPSVTEW 180

Query: 181 KFLKARLLGEMGKTENAREVFEEILAENPLSFEALFENALLMDRCGEGEAVLLRLERALR 240
           KFL ARLLGEMGKTENAR+VFEEILA NPLSFEALFENALLMDRCGEGEAVL RLE ALR
Sbjct: 181 KFLMARLLGEMGKTENARDVFEEILAVNPLSFEALFENALLMDRCGEGEAVLRRLEEALR 240

Query: 241 IAENEKKAKEARDVRLIMAQIQFLQKNVEGALTSYKELINEDPSDFRPYFCQGMIYSLLD 300
           IAE+E KAKEARDV+LIMAQIQFLQKNVE AL SYKEL+ EDP+DFRPYFCQGMIYSLLD
Sbjct: 241 IAEDENKAKEARDVKLIMAQIQFLQKNVEEALKSYKELVKEDPNDFRPYFCQGMIYSLLD 300

Query: 301 KNEEARQQFSKYRELSPKKFEVDGYLRTPLSRMKIFGSDE 335
           KN EAR+QFSKYRELSPKKFEVDGYLRTPLSRMKIFGSDE
Sbjct: 301 KNVEAREQFSKYRELSPKKFEVDGYLRTPLSRMKIFGSDE 340

[Close]

BLAST of Cp4.1LG01g18860 vs. ExPASy TrEMBL
Match: A0A1S3CRV7 (protein SLOW GREEN 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103504062 PE=4 SV=1)

HSP 1 Score: 511 bits (1316), Expect = 3.33e-180
Identity = 290/343 (84.55%), Postives = 307/343 (89.50%), Query Frame = 0


Query: 1   MSFTFASMSSPSSSSLSSIFI--SSKSKPVP-PPNLRFVAPLSRTSVSLHRFRVRASSVP 60
           MS TFASMSSPSSSSLSSIF    S SK V    NLRF APLSR S+S+H FRVRASSVP
Sbjct: 1   MSSTFASMSSPSSSSLSSIFNFNPSNSKMVSFSNNLRFAAPLSRHSISVHPFRVRASSVP 60

Query: 61  VSR-NHPVVQCFKNYARAAILIGAAATMVGKFSHLPARAESPVAVEEEASRMEE---EQR 120
           V R +HPVVQC +NYA+AAILIGAAATMVGKFS+LPARAE+P AV EEASRMEE   ++R
Sbjct: 61  VPRTHHPVVQCLRNYAKAAILIGAAATMVGKFSNLPARAETPAAVAEEASRMEETTPDKR 120

Query: 121 IVEDSDQDGQQSSPLNDFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVT 180
           IVEDSDQDG+QSSPLNDFLESNSEAVEALKSLLQQKLEN EDEEALKIL QLVSA  SVT
Sbjct: 121 IVEDSDQDGRQSSPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSALPSVT 180

Query: 181 EWKFLKARLLGEMGKTENAREVFEEILAENPLSFEALFENALLMDRCGEGEAVLLRLERA 240
           EWKFL ARLL EMGKTENAREVFEEILA +PLS+EALFENALLMDRCGEGEAVL RLE A
Sbjct: 181 EWKFLMARLLAEMGKTENAREVFEEILAVDPLSYEALFENALLMDRCGEGEAVLRRLEEA 240

Query: 241 LRIAENEKKAKEARDVRLIMAQIQFLQKNVEGALTSYKELINEDPSDFRPYFCQGMIYSL 300
           LRIAE E+KAKEARDV+LIMAQIQFLQKNVE AL SYKEL+ EDPSDFRPYFCQGMIYSL
Sbjct: 241 LRIAEKERKAKEARDVKLIMAQIQFLQKNVEEALKSYKELVKEDPSDFRPYFCQGMIYSL 300

Query: 301 LDKNEEARQQFSKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 336
           LDKN EA+QQF+KYRELSPKKFEVDGYLRTPLSRMKIFGSDEN
Sbjct: 301 LDKNTEAKQQFAKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 343

[Close]

BLAST of Cp4.1LG01g18860 vs. ExPASy TrEMBL
Match: A0A5D3BG83 (Protein SLOW GREEN 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00680 PE=4 SV=1)

HSP 1 Score: 509 bits (1312), Expect = 1.35e-179
Identity = 289/343 (84.26%), Postives = 306/343 (89.21%), Query Frame = 0


Query: 1   MSFTFASMSSPSSSSLSSIFI--SSKSKPVP-PPNLRFVAPLSRTSVSLHRFRVRASSVP 60
           MS TFASMSSPSSSSLSSIF    S SK V    NLRF APLSR S+S+H FRVRASSVP
Sbjct: 1   MSSTFASMSSPSSSSLSSIFNFNPSNSKMVSFSNNLRFAAPLSRHSISVHPFRVRASSVP 60

Query: 61  VSR-NHPVVQCFKNYARAAILIGAAATMVGKFSHLPARAESPVAVEEEASRMEE---EQR 120
           V R +HPVVQC +NYA+AAILIGAAATMVGKFS+LPARAE+P  V EEASRMEE   ++R
Sbjct: 61  VPRTHHPVVQCLRNYAKAAILIGAAATMVGKFSNLPARAETPAVVAEEASRMEETSPDKR 120

Query: 121 IVEDSDQDGQQSSPLNDFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVT 180
           IVEDSDQDG+QSSPLNDFLESNSEAVEALKSLLQQKLEN EDEEALKIL QLVSA  SVT
Sbjct: 121 IVEDSDQDGRQSSPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSALPSVT 180

Query: 181 EWKFLKARLLGEMGKTENAREVFEEILAENPLSFEALFENALLMDRCGEGEAVLLRLERA 240
           EWKFL ARLL EMGKTENAREVFEEILA +PLS+EALFENALLMDRCGEGEAVL RLE A
Sbjct: 181 EWKFLMARLLAEMGKTENAREVFEEILAVDPLSYEALFENALLMDRCGEGEAVLRRLEEA 240

Query: 241 LRIAENEKKAKEARDVRLIMAQIQFLQKNVEGALTSYKELINEDPSDFRPYFCQGMIYSL 300
           LRIAE E+KAKEARDV+LIMAQIQFLQKNVE AL SYKEL+ EDPSDFRPYFCQGMIYSL
Sbjct: 241 LRIAEKERKAKEARDVKLIMAQIQFLQKNVEEALKSYKELVKEDPSDFRPYFCQGMIYSL 300

Query: 301 LDKNEEARQQFSKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 336
           LDKN EA+QQF+KYRELSPKKFEVDGYLRTPLSRMKIFGSDEN
Sbjct: 301 LDKNTEAKQQFAKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 343

[Close]

BLAST of Cp4.1LG01g18860 vs. TAIR 10
Match: AT3G18420.1 (Protein prenylyltransferase superfamily protein )

HSP 1 Score: 344.7 bits (883), Expect = 8.1e-95
Identity = 198/327 (60.55%), Postives = 240/327 (73.39%), Query Frame = 0


Query: 9   SSPSSSSLSSIFISSKSKPVPPPNLRFVAPLSRTSVSLHRFRVRASSVPVSRNHPVVQCF 68
           S  +SSSL S F++ K+ PV  P +            L   R+RASS   S  +   + F
Sbjct: 4   SLSASSSLVSSFVAVKATPVTGPLI--------PRRDLLSIRIRASSNQNSSGYCFPEKF 63

Query: 69  KNYARAAILIGAAATMVGKFSHLPARAESPVAVEEEASRMEEEQRIVEDSDQDGQQSSPL 128
           K++A++AILIGAA +M GKFS LP +AESPV   E+     +E+++ E         +PL
Sbjct: 64  KSFAKSAILIGAAVSMTGKFSTLPVKAESPVTTIEKTYEEVKEEKLSE--------ITPL 123

Query: 129 NDFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVTEWKFLKARLLGEMGK 188
           ++ L+S  EAVE L+SLLQQKLE  EDEEALK+L +LV+AQ   TEWKFL ARLLGEMG+
Sbjct: 124 SELLDSTPEAVETLRSLLQQKLEKGEDEEALKLLERLVAAQPEETEWKFLMARLLGEMGR 183

Query: 189 TENAREVFEEILAENPLSFEALFENALLMDRCGEGEAVLLRLERALRIAENEKKAKEARD 248
            ENAR++FEEIL  NPLSFEALFENALLMDR GEG AVL RLE AL +AE E   KEARD
Sbjct: 184 PENARQMFEEILQRNPLSFEALFENALLMDRSGEGNAVLQRLEDALAVAEAEYLVKEARD 243

Query: 249 VRLIMAQIQFLQKNVEGALTSYKELINEDPSDFRPYFCQGMIYSLLDKNEEARQQFSKYR 308
           VRLI+AQI FLQKNV+ AL SY++L  EDP DFRPYFC+GMIYSLLDKN EA++QF+KYR
Sbjct: 244 VRLIIAQIHFLQKNVDEALKSYEQLTKEDPKDFRPYFCRGMIYSLLDKNVEAKEQFAKYR 303

Query: 309 ELSPKKFEVDGYLRTPLSRMKIFGSDE 336
           ELSPKKFEV+GYLRTPLS+MK+FG  E
Sbjct: 304 ELSPKKFEVEGYLRTPLSKMKLFGGSE 314

[Close]

BLAST of Cp4.1LG01g18860 vs. TAIR 10
Match: AT2G37400.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 136.0 bits (341), Expect = 5.7e-32
Identity = 75/210 (35.71%), Postives = 124/210 (59.05%), Query Frame = 0


Query: 123 QQSSPLNDFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVTEWKFLKARL 182
           ++   L ++L S+ + VEAL+SL++ ++++ +  EA++++++L+  +    EW  LKA +
Sbjct: 114 EEERSLEEYLASHPDDVEALRSLMEVRIKSRKLLEAIELIDRLIELEPEEKEWPMLKANI 173

Query: 183 LGEMGKTENAREVFEEILAENPLSFEALFENALLMDRCGEG-EAVLLRLERALRIAENEK 242
               G  E+A+  FEEIL ++PL  EA     +     G+   AV  R+E A+   + EK
Sbjct: 174 FSYSGDLESAKTGFEEILVKDPLRVEAYHGLVMAYSDSGDDLNAVEKRIEEAMVRCKKEK 233

Query: 243 KAKEARDVRLIMAQIQFLQKNVEGALTSYKELINEDPSDFRPYFCQGMIYSLLDKNEEAR 302
             K+ RD +L++AQI+ ++     AL  Y+EL+ E+P DFRPY CQG+IY++L K  EA 
Sbjct: 234 NRKDLRDFKLLVAQIRVIEGKHNEALKLYEELVKEEPRDFRPYLCQGIIYTVLKKENEAE 293

Query: 303 QQFSKYRELSPKKFEVDGYLRTPLSRMKIF 332
           +QF K+R L PK      Y    +   K+F
Sbjct: 294 KQFEKFRRLVPKNHPYREYFMDNMVASKLF 323

[Close]

BLAST of Cp4.1LG01g18860 vs. TAIR 10
Match: AT4G39470.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 125.6 bits (314), Expect = 7.8e-29
Identity = 77/249 (30.92%), Postives = 137/249 (55.02%), Query Frame = 0


Query: 73  RAAILIGAAATMVGKFSHLPARAESPVAVEEEASRMEEEQRIVEDSDQDGQQSSPLNDFL 132
           +AAIL+  +   +G  S  PA A  P A     + +E+E+                   L
Sbjct: 82  KAAILLVGSFVFLGFCSSKPALA-LPTATVVSQAELEDEKM--------------FEKLL 141

Query: 133 ESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVTEWKFLKARLLGEMGKTENA 192
           E+  E +EA+K+++ +K+   ++E+A+K + +L+  +    EWK L+A     MG+   A
Sbjct: 142 ENEPENMEAMKAVVYKKMRRGKNEDAVKYVEKLMKLEPHEVEWKLLEALCYETMGELSKA 201

Query: 193 REVFEEILAENPLSFEALFENALLMDRCGEGEAVLLRLERALRIAENEKKAKEARDVRLI 252
           + ++++IL E PL   AL   A++M +  +  +V   L  A+ +A    +  E R+++++
Sbjct: 202 KRLYKDILKEQPLLIRALHGLAMVMHKTHD-TSVFDMLIEAMEVARQGNRVTEERNIQVL 261

Query: 253 MAQIQFLQKNVEGALTSYKELINEDPSDFRPYFCQGMIYSLLDKNEEARQQFSKYRELSP 312
           + Q+  ++   E  L  +++++N++P DFRPY CQG++YSL+DK EEA QQF  Y  L P
Sbjct: 262 IGQMHIVEGQFEEGLKIFQQMVNDNPRDFRPYLCQGIVYSLMDKKEEAAQQFEIYWSLVP 314

Query: 313 KKFEVDGYL 322
            +F   G+L
Sbjct: 322 GEFPQKGFL 314

[Close]

BLAST of Cp4.1LG01g18860 vs. TAIR 10
Match: AT3G53560.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 122.1 bits (305), Expect = 8.6e-28
Identity = 99/334 (29.64%), Postives = 169/334 (50.60%), Query Frame = 0


Query: 7   SMSSPSSSSLSSIFISSKSKPVPPPNLRFVAPLSRTSVSLHRFRVRASSVPVSRNHPVVQ 66
           S +  SSS+       S  +P        ++ L   S+     + + S  P+ ++ P   
Sbjct: 17  SFTHTSSSTFPKNLFKSSIQP--------ISSLKSASIKASSSKFQNSITPLPKSTP--- 76

Query: 67  CFKNYARAAILIGAAATMVGKFSHLPARA-----ESPVAVE-EEASRMEEEQRIVEDSDQ 126
            F+ +    I +  AA ++    HL + A       P +VE +E   +EEE+R       
Sbjct: 77  -FRLFKSTCITLTTAAALLLANLHLKSPAIAAPIAPPPSVESKENVTLEEEER------- 136

Query: 127 DGQQSSPLNDFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVTEWKFLKA 186
                  L++ L ++   V+AL+SL++ K+++ +  EA++++++L+  +    EW  LKA
Sbjct: 137 ------ALDEHLITHPSDVDALRSLMEVKIKSRKLTEAVEVIDRLIKLEPEEKEWPVLKA 196

Query: 187 RLLGEMGKTENAREVFEEILAENPLSFEALFENALLMDRCGEG---EAVLLRLERALRIA 246
            +    G  + A+  FEEILA++PL  EA   + LLM     G   + V  R+E A+   
Sbjct: 197 NIFTYSGDLDLAKTGFEEILAKDPLRVEAY--HGLLMAYSDAGLDLKEVESRIEEAMLKC 256

Query: 247 ENEKKAKEARDVRLIMAQIQFLQKNVEGALTSYKELINEDPSDFRPYFCQGMIYSLLDKN 306
           + E    + RD +L++AQI+ ++     AL  Y+EL+ E+P DFRPY CQG+IY+LL K 
Sbjct: 257 KKENNQNDFRDFKLLVAQIRVIEGKHSEALKLYQELVKEEPRDFRPYLCQGIIYTLLKKK 316

Query: 307 EEARQQFSKYRELSPKKFEVDGYLRTPLSRMKIF 332
           ++A +QF  +R+L PK      Y    +   K+F
Sbjct: 317 DKAEEQFDNFRKLVPKNHPYREYFMDNMIATKLF 323

[Close]

BLAST of Cp4.1LG01g18860 vs. TAIR 10
Match: AT5G02590.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 119.4 bits (298), Expect = 5.6e-27
Identity = 87/271 (32.10%), Postives = 147/271 (54.24%), Query Frame = 0


Query: 76  ILIGAAATMVGKFSHL------PARAESPVAVEEEASRMEEEQRIVEDSDQDGQQSSPLN 135
           + +  AA ++    HL       A   SP      A+ +  +Q  +    ++ ++ + L 
Sbjct: 62  VTLTTAAALLSASLHLSTKPVTAATLVSPPPPPSTAADLTSDQ--ISSRPKEEEEEAALE 121

Query: 136 DFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSSVTEWKFLKARLLGEMGKT 195
             L  N   VEAL+SL++ K +    + AL+ILN+L+  Q    EW+ LKA++    G  
Sbjct: 122 KHLTKNPNDVEALQSLMKIKFQTKNIDHALEILNRLIEIQPEEQEWRILKAQVQTYGGDF 181

Query: 196 ENAREVFEEILAENPLSFEALFENALLMDRCGEGEAVL----LRLERALRIAENEKKAKE 255
           ++A + FEE+L+++P   EA   + L+M    E E+ L     R+  A+   + E K K+
Sbjct: 182 DSATKGFEEVLSKDPFRVEAY--HGLVM-AYSESESKLSEIESRINEAIEKCKKENK-KD 241

Query: 256 ARDVRLIMAQIQFLQKNVEGALTSYKELINEDPSDFRPYFCQGMIYSLLDKNEEARQQFS 315
            RD  L++AQI+ ++ N   AL  Y+EL+ ++P DFRPY CQG+IY+L+ K +EA +QF+
Sbjct: 242 FRDFMLLIAQIRVIKGNPIEALRVYQELVKDEPKDFRPYLCQGLIYTLMKKKDEAEKQFA 301

Query: 316 KYRELSPKKFEVDGYL-RTPLSRMKIFGSDE 336
           ++R L P+      YL    L+  K+F  ++
Sbjct: 302 EFRRLVPENHPYKEYLDANVLNTNKLFAKNQ 326

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g18860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LS48	1.1e-93	60.55	protein SLOW GREEN 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SG1 PE=1 ...	[more]

BLAST of Cp4.1LG01g18860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023512073.1	3.59e-224	100.00	protein SLOW GREEN 1, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023512081.1...	[more]
KAG6601916.1	2.32e-220	98.51	protein SLOW GREEN 1, chloroplastic, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_022956910.1	4.68e-220	97.92	protein SLOW GREEN 1, chloroplastic [Cucurbita moschata] >XP_022956918.1 protein...	[more]
XP_022990705.1	1.27e-215	97.03	protein SLOW GREEN 1, chloroplastic [Cucurbita maxima] >XP_022990706.1 protein S...	[more]
XP_038876236.1	6.51e-191	87.61	protein SLOW GREEN 1, chloroplastic [Benincasa hispida]	[more]

BLAST of Cp4.1LG01g18860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GYL7	2.27e-220	97.92	protein SLOW GREEN 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC11145845...	[more]
A0A6J1JQU3	6.17e-216	97.03	protein SLOW GREEN 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487518 ...	[more]
A0A6J1CXB6	4.59e-189	86.47	protein SLOW GREEN 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC1110156...	[more]
A0A1S3CRV7	3.33e-180	84.55	protein SLOW GREEN 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103504062 PE=4...	[more]
A0A5D3BG83	1.35e-179	84.26	Protein SLOW GREEN 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174...	[more]

BLAST of Cp4.1LG01g18860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18420.1	8.1e-95	60.55	Protein prenylyltransferase superfamily protein	[more]
AT2G37400.1	5.7e-32	35.71	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G39470.1	7.8e-29	30.92	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G53560.1	8.6e-28	29.64	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G02590.1	5.6e-27	32.10	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 227..247
None	No IPR available	COILS	Coil	Coil	coord: 136..159
None	No IPR available	COILS	Coil	Coil	coord: 256..276
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..118
None	No IPR available	PANTHER	PTHR26312	TETRATRICOPEPTIDE REPEAT PROTEIN 5	coord: 84..335
None	No IPR available	PANTHER	PTHR26312:SF138	PROTEIN SLOW GREEN 1, CHLOROPLASTIC	coord: 84..335
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 281..314 e-value: 25.0 score: 11.4 coord: 173..206 e-value: 80.0 score: 7.0 coord: 247..280 e-value: 16.0 score: 13.2
IPR019734	Tetratricopeptide repeat	PFAM	PF13174	TPR_6	coord: 177..206 e-value: 0.055 score: 14.1 coord: 248..279 e-value: 0.025 score: 15.2
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 281..314 score: 8.1424
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 64..249 e-value: 2.7E-11 score: 45.2
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 250..322 e-value: 4.6E-9 score: 37.9
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 134..314

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g18860.1	Cp4.1LG01g18860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016740	transferase activity