Cp4.1LG01g18760 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g18760
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionPentatricopeptide repeat-containing protein
LocationCp4.1LG01: 16098179 .. 16100074 (-)
RNA-Seq ExpressionCp4.1LG01g18760
SyntenyCp4.1LG01g18760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGTATTACATTATGCTGACGTGGAAAATCCCTCAAGGCCTATGTGTCCAGAAACTTCCCACGTGGCACAAATTCAGTGTATGACTTAACCATCGTCGTTACGGAAAAGGTACATACGCATAGCATTCTGATCCTCCTCCCCTGCCTTCGGACTTTTATCTCCGATGGCCATTACCGGCTCTACTGACTGGTCACCGCCTCCATTGAGCTCTTTCAGGTAATCCTATCATCTCAGCCACTAATCTCGCTCTCTTTTTCTCGATCTTCGATCTCTTCATCTAAATTCCTCCGGTAGCCTTTCCCCGATCCCCGAACAATCCCCCATTGCCCTAACCGAGATCGGTTTGGACTCTTCTTCAAGCTTTTGAACTCCCTGAAGGATTAGATCTACGAGTATTACGTGAAATCGGCATTGAGGCATCTAATCAGGTACTTAGTGCGATTGAAGAATTGGGATTTTATTTTGTTAGTTTCTTGAGATTTTGATGATTATGGTGTTTGCACTGATATTGATACTTGTTCTAGATTGGTTAGTAGTTGAGAGTAAGATTGTGAATTTTACGCCCTTTTCGGCAAAAATTGATGGGATTCTTTGCTAATCATTAGTGAAATTAGGGCGAGTGTTCGAGTCGCTTGAGTTCTTAGAGATATGAGGAAGAAAGGGATTGAAGAGGATTTGATATGCAGTTTTGCAAGCATTTAGGAAGTTCAACTGGCTGAAGATCTTTACAATGAGGCAAAAGCCAAGAAGTTTTTGAGAGATCCTGCAATGTTTCTAAAGCTCATATTGATGTATATTCAACAAGGGTCATTAGAGAAGGCACTTGAGATTGTGGAACTGATGAAGGGCTTTAAAATTGGAGTGTCTGACTGCATTTTCTGTGGAATTGTCAATGGCTACGCCCTGAGAAGGGGTTAGGGTTTACGAGAAGCTGATCGGGTGGGAGGTCGGACAAGTGAAAGCCCAAAGAGAATAATATTTGCTAACTGTGATTTTGTATGGTATAAATGGTAGAGCTAGATACCGAGTGGTATGGCAAATGAGAACGTTGGGTTCCCAAGGGGCAAATGGGTGGATTGTGAGATTCCACGTTGGTTGAAGGGGAGAACGAAACATTTCTTATAAGGATGTGGAAACATTTTTTAGCAGACGTGTTAAAACAAGGGGAAACTCAAAAGGGAAAGTCCAAAAGGGACAATATCTGCAAACAACAGGTGGTGTGCCAGAGAGAACGTTGGCTCTCATGGGAATGGATCACGTAGGCTTAGCTGTTACACCTCAGCGATCAACCACGTAGGCTTAGCTGTTACACCTCAGCGATCAACGCCTACTGCCATGTCGGGCTGTACTCAAAAGCAGAAATGGAGGAGAAGGGGTTTGACAAAAGTGTAGTTTGCATACTCTAGCTTGATATCAATGTATGGGAAGACAGGAGGTTAAAACATACAATGAAGCTGAGAGTGTCAAAGAATAGCTCAAGTGAGCCAAAACGAAGCATGAAAGACACCATTATATGAATAACATTACATTAATCCAAACCATAACCAAAGCAAATGAAACAACGCCCTTACACAACACAACAATACCCAAAAGATGGCCACTTTTATTCTATAATATCACGCCCATAAAGGTCTCATCAGTGTCCACTTCAACTGATAGACAACTGATTTGAATCAACAAAGACCACTCAAACGCAGTGCTTTGTGCAGAAGCAGCGGCGGCGGAAGCCTCTGCAATGCCCACCATGGAAGCCCTCTGTTTTGCAGACATGGCCGCAGTTGTTCTTACTGAAGCACAACCCCCTGAAGTGGTGGCTCGGAGACTCGCATGTCCTTGCCTCTGTAGCCATTGGCGCCATCCCTGGACCAAATCAACCATTTTAATCATCTAA

mRNA sequence

ATGGCCGTAATCCTATCATCTCAGCCACTAATCTCGCTCTCTTTTTCTCGATCTTCGATCTCTTCATCTAAATTCCTCCGCCTTTCCCCGATCCCCGAACAATCCCCCATTGCCCTAACCGAGATCGCTTTTGAACTCCCTGAAGGATTAGATCTACGAGTATTACGTGAAATCGGCATTGAGGCATCTAATCAGGAAGTTCAACTGGCTGAAGATCTTTACAATGAGGCAAAAGCCAAGAAGTTTTTGAGAGATCCTGCAATGTTTCTAAAGCTCATATTGATGTATATTCAACAAGGGTCATTAGAGAAGGCACTTGAGATTGTGGAACTGATGAAGGGCTTTAAAATTGGAGTGTCTGACTGCATTTTCTGTGGAATTCTTGATATCAATGTATGGGAAGACAGGAGGTTAAAACATACAATGAAGCTGAGAGTGTCAAAGAATAGCTCAAAAGCAGCGGCGGCGGAAGCCTCTGCAATGCCCACCATGGAAGCCCTCTGTTTTGCAGACATGGCCGCAGTTGTTCTTACTGAAGCACAACCCCCTGAAGTGGTGGCTCGGAGACTCGCATGTCCTTGCCTCTGTAGCCATTGGCGCCATCCCTGGACCAAATCAACCATTTTAATCATCTAA

Coding sequence (CDS)

ATGGCCGTAATCCTATCATCTCAGCCACTAATCTCGCTCTCTTTTTCTCGATCTTCGATCTCTTCATCTAAATTCCTCCGCCTTTCCCCGATCCCCGAACAATCCCCCATTGCCCTAACCGAGATCGCTTTTGAACTCCCTGAAGGATTAGATCTACGAGTATTACGTGAAATCGGCATTGAGGCATCTAATCAGGAAGTTCAACTGGCTGAAGATCTTTACAATGAGGCAAAAGCCAAGAAGTTTTTGAGAGATCCTGCAATGTTTCTAAAGCTCATATTGATGTATATTCAACAAGGGTCATTAGAGAAGGCACTTGAGATTGTGGAACTGATGAAGGGCTTTAAAATTGGAGTGTCTGACTGCATTTTCTGTGGAATTCTTGATATCAATGTATGGGAAGACAGGAGGTTAAAACATACAATGAAGCTGAGAGTGTCAAAGAATAGCTCAAAAGCAGCGGCGGCGGAAGCCTCTGCAATGCCCACCATGGAAGCCCTCTGTTTTGCAGACATGGCCGCAGTTGTTCTTACTGAAGCACAACCCCCTGAAGTGGTGGCTCGGAGACTCGCATGTCCTTGCCTCTGTAGCCATTGGCGCCATCCCTGGACCAAATCAACCATTTTAATCATCTAA

Protein sequence

MAVILSSQPLISLSFSRSSISSSKFLRLSPIPEQSPIALTEIAFELPEGLDLRVLREIGIEASNQEVQLAEDLYNEAKAKKFLRDPAMFLKLILMYIQQGSLEKALEIVELMKGFKIGVSDCIFCGILDINVWEDRRLKHTMKLRVSKNSSKAAAAEASAMPTMEALCFADMAAVVLTEAQPPEVVARRLACPCLCSHWRHPWTKSTILII
Homology
[Close]
BLAST of Cp4.1LG01g18760 vs. ExPASy Swiss-Prot
Match: Q66GP4 (Pentatricopeptide repeat-containing protein At5g13770, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g13770 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.7e-10
Identity = 30/68 (44.12%), Postives = 48/68 (70.59%), Query Frame = 0 

Query: 62  ASNQEVQLAEDLYNEAKAKKFLRDPAMFLKLILMYIQQGSLEKALEIVELMKGFKIGVSD 121
           A  +EV + E L+ EA  KK L+DP M LK++LMY+++G++E  LE+V  M+  ++ V+D
Sbjct: 294 AEAREVVITEKLFKEAGGKKLLKDPEMCLKVVLMYVREGNMETTLEVVAAMRKAELKVTD 353

Query: 122 CIFCGILD 130
           CI C I++
Sbjct: 354 CILCAIVN 361

[Close]
BLAST of Cp4.1LG01g18760 vs. NCBI nr
Match: XP_004151188.1 (pentatricopeptide repeat-containing protein At5g13770, chloroplastic [Cucumis sativus] >KGN49761.1 hypothetical protein Csa_017804 [Cucumis sativus])

HSP 1 Score: 118 bits (295), Expect = 1.07e-26
Identity = 62/76 (81.58%), Postives = 67/76 (88.16%), Query Frame = 0 

Query: 62  ASNQEVQLAEDLYNEAKAKKFLRDPAMFLKLILMYIQQGSLEKALEIVELMKGFKIGVSD 121
           AS QEV+LAEDLYNEAKAKK LRDPAMFLKLILMY+QQGSLEKALEIVE+MK FKIGVSD
Sbjct: 306 ASIQEVKLAEDLYNEAKAKKLLRDPAMFLKLILMYVQQGSLEKALEIVEVMKDFKIGVSD 365

Query: 122 CIFCGILDINVWEDRR 137
           CIFC I  +N +  RR
Sbjct: 366 CIFCAI--VNGYATRR 379

[Close]
BLAST of Cp4.1LG01g18760 vs. NCBI nr
Match: XP_038874315.1 (pentatricopeptide repeat-containing protein At5g13770, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 116 bits (291), Expect = 2.31e-26
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 0 

Query: 62  ASNQEVQLAEDLYNEAKAKKFLRDPAMFLKLILMYIQQGSLEKALEIVELMKGFKIGVSD 121
           AS QEV+LAEDLYNEAKAKK LRDPAMFLKLILMYIQQGSLEKALE+V++MK FKIGVSD
Sbjct: 208 ASIQEVKLAEDLYNEAKAKKLLRDPAMFLKLILMYIQQGSLEKALELVQVMKDFKIGVSD 267

Query: 122 CIFCGILDINVWEDRR 137
           CIFC I  +N +  RR
Sbjct: 268 CIFCAI--VNGYATRR 281

[Close]
BLAST of Cp4.1LG01g18760 vs. NCBI nr
Match: KAA0067569.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYJ97187.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (292), Expect = 2.74e-26
Identity = 62/76 (81.58%), Postives = 67/76 (88.16%), Query Frame = 0 

Query: 62  ASNQEVQLAEDLYNEAKAKKFLRDPAMFLKLILMYIQQGSLEKALEIVELMKGFKIGVSD 121
           AS +EV+LAEDLYNEAKAKK LRDPAMFLKLILMYIQQGSLEKALEIVE+MK FKIGVSD
Sbjct: 306 ASIREVKLAEDLYNEAKAKKLLRDPAMFLKLILMYIQQGSLEKALEIVEVMKDFKIGVSD 365

Query: 122 CIFCGILDINVWEDRR 137
           CIFC I  +N +  RR
Sbjct: 366 CIFCAI--VNGYATRR 379

[Close]
BLAST of Cp4.1LG01g18760 vs. NCBI nr
Match: XP_008465506.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic [Cucumis melo])

HSP 1 Score: 117 bits (292), Expect = 2.74e-26
Identity = 62/76 (81.58%), Postives = 67/76 (88.16%), Query Frame = 0 

Query: 62  ASNQEVQLAEDLYNEAKAKKFLRDPAMFLKLILMYIQQGSLEKALEIVELMKGFKIGVSD 121
           AS +EV+LAEDLYNEAKAKK LRDPAMFLKLILMYIQQGSLEKALEIVE+MK FKIGVSD
Sbjct: 306 ASIREVKLAEDLYNEAKAKKLLRDPAMFLKLILMYIQQGSLEKALEIVEVMKDFKIGVSD 365

Query: 122 CIFCGILDINVWEDRR 137
           CIFC I  +N +  RR
Sbjct: 366 CIFCAI--VNGYATRR 379

[Close]
BLAST of Cp4.1LG01g18760 vs. NCBI nr
Match: XP_038874313.1 (pentatricopeptide repeat-containing protein At5g13770, chloroplastic isoform X1 [Benincasa hispida] >XP_038874314.1 pentatricopeptide repeat-containing protein At5g13770, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 116 bits (291), Expect = 3.78e-26
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 0 

Query: 62  ASNQEVQLAEDLYNEAKAKKFLRDPAMFLKLILMYIQQGSLEKALEIVELMKGFKIGVSD 121
           AS QEV+LAEDLYNEAKAKK LRDPAMFLKLILMYIQQGSLEKALE+V++MK FKIGVSD
Sbjct: 309 ASIQEVKLAEDLYNEAKAKKLLRDPAMFLKLILMYIQQGSLEKALELVQVMKDFKIGVSD 368

Query: 122 CIFCGILDINVWEDRR 137
           CIFC I  +N +  RR
Sbjct: 369 CIFCAI--VNGYATRR 382

[Close]
BLAST of Cp4.1LG01g18760 vs. ExPASy TrEMBL
Match: A0A0A0KPV8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G114580 PE=4 SV=1)

HSP 1 Score: 118 bits (295), Expect = 5.17e-27
Identity = 62/76 (81.58%), Postives = 67/76 (88.16%), Query Frame = 0 

Query: 62  ASNQEVQLAEDLYNEAKAKKFLRDPAMFLKLILMYIQQGSLEKALEIVELMKGFKIGVSD 121
           AS QEV+LAEDLYNEAKAKK LRDPAMFLKLILMY+QQGSLEKALEIVE+MK FKIGVSD
Sbjct: 306 ASIQEVKLAEDLYNEAKAKKLLRDPAMFLKLILMYVQQGSLEKALEIVEVMKDFKIGVSD 365

Query: 122 CIFCGILDINVWEDRR 137
           CIFC I  +N +  RR
Sbjct: 366 CIFCAI--VNGYATRR 379

[Close]
BLAST of Cp4.1LG01g18760 vs. ExPASy TrEMBL
Match: A0A5A7VR01 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00670 PE=4 SV=1)

HSP 1 Score: 117 bits (292), Expect = 1.32e-26
Identity = 62/76 (81.58%), Postives = 67/76 (88.16%), Query Frame = 0 

Query: 62  ASNQEVQLAEDLYNEAKAKKFLRDPAMFLKLILMYIQQGSLEKALEIVELMKGFKIGVSD 121
           AS +EV+LAEDLYNEAKAKK LRDPAMFLKLILMYIQQGSLEKALEIVE+MK FKIGVSD
Sbjct: 306 ASIREVKLAEDLYNEAKAKKLLRDPAMFLKLILMYIQQGSLEKALEIVEVMKDFKIGVSD 365

Query: 122 CIFCGILDINVWEDRR 137
           CIFC I  +N +  RR
Sbjct: 366 CIFCAI--VNGYATRR 379

[Close]
BLAST of Cp4.1LG01g18760 vs. ExPASy TrEMBL
Match: A0A1S3CPF0 (pentatricopeptide repeat-containing protein At5g13770, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503127 PE=4 SV=1)

HSP 1 Score: 117 bits (292), Expect = 1.32e-26
Identity = 62/76 (81.58%), Postives = 67/76 (88.16%), Query Frame = 0 

Query: 62  ASNQEVQLAEDLYNEAKAKKFLRDPAMFLKLILMYIQQGSLEKALEIVELMKGFKIGVSD 121
           AS +EV+LAEDLYNEAKAKK LRDPAMFLKLILMYIQQGSLEKALEIVE+MK FKIGVSD
Sbjct: 306 ASIREVKLAEDLYNEAKAKKLLRDPAMFLKLILMYIQQGSLEKALEIVEVMKDFKIGVSD 365

Query: 122 CIFCGILDINVWEDRR 137
           CIFC I  +N +  RR
Sbjct: 366 CIFCAI--VNGYATRR 379

[Close]
BLAST of Cp4.1LG01g18760 vs. ExPASy TrEMBL
Match: A0A6J1FDV4 (pentatricopeptide repeat-containing protein At5g13770, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111444845 PE=4 SV=1)

HSP 1 Score: 114 bits (286), Expect = 8.69e-26
Identity = 61/76 (80.26%), Postives = 65/76 (85.53%), Query Frame = 0 

Query: 62  ASNQEVQLAEDLYNEAKAKKFLRDPAMFLKLILMYIQQGSLEKALEIVELMKGFKIGVSD 121
           AS QEV+LAEDLYNEAK KK LRDPAMF KLILMYIQQGSLEKALEIVE+MK FKIGVSD
Sbjct: 307 ASIQEVKLAEDLYNEAKTKKLLRDPAMFQKLILMYIQQGSLEKALEIVEVMKDFKIGVSD 366

Query: 122 CIFCGILDINVWEDRR 137
           CIFC I  +N +  RR
Sbjct: 367 CIFCAI--VNGYATRR 380

[Close]
BLAST of Cp4.1LG01g18760 vs. ExPASy TrEMBL
Match: A0A6J1JST6 (pentatricopeptide repeat-containing protein At5g13770, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111489451 PE=4 SV=1)

HSP 1 Score: 110 bits (276), Expect = 1.33e-24
Identity = 59/76 (77.63%), Postives = 63/76 (82.89%), Query Frame = 0 

Query: 62  ASNQEVQLAEDLYNEAKAKKFLRDPAMFLKLILMYIQQGSLEKALEIVELMKGFKIGVSD 121
           AS QEV+LAEDLYNEAK KK LRDPA F KLILMYIQQGSLEKALEIVE+MK FKIG SD
Sbjct: 206 ASIQEVKLAEDLYNEAKTKKLLRDPATFQKLILMYIQQGSLEKALEIVEVMKDFKIGASD 265

Query: 122 CIFCGILDINVWEDRR 137
           CIFC I  +N +  RR
Sbjct: 266 CIFCAI--VNGYATRR 279

[Close]
BLAST of Cp4.1LG01g18760 vs. TAIR 10
Match: AT5G13770.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-11
Identity = 30/68 (44.12%), Postives = 48/68 (70.59%), Query Frame = 0 

Query: 62  ASNQEVQLAEDLYNEAKAKKFLRDPAMFLKLILMYIQQGSLEKALEIVELMKGFKIGVSD 121
           A  +EV + E L+ EA  KK L+DP M LK++LMY+++G++E  LE+V  M+  ++ V+D
Sbjct: 294 AEAREVVITEKLFKEAGGKKLLKDPEMCLKVVLMYVREGNMETTLEVVAAMRKAELKVTD 353

Query: 122 CIFCGILD 130
           CI C I++
Sbjct: 354 CILCAIVN 361

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g18760 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q66GP41.7e-1044.12Pentatricopeptide repeat-containing protein At5g13770, chloroplastic OS=Arabidop... [more]
BLAST of Cp4.1LG01g18760 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004151188.11.07e-2681.58pentatricopeptide repeat-containing protein At5g13770, chloroplastic [Cucumis sa... [more]
XP_038874315.12.31e-2680.26pentatricopeptide repeat-containing protein At5g13770, chloroplastic isoform X2 ... [more]
KAA0067569.12.74e-2681.58pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYJ97187... [more]
XP_008465506.12.74e-2681.58PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic ... [more]
XP_038874313.13.78e-2680.26pentatricopeptide repeat-containing protein At5g13770, chloroplastic isoform X1 ... [more]
BLAST of Cp4.1LG01g18760 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPV85.17e-2781.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G114580 PE=4 SV=1[more]
A0A5A7VR011.32e-2681.58Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3CPF01.32e-2681.58pentatricopeptide repeat-containing protein At5g13770, chloroplastic OS=Cucumis ... [more]
A0A6J1FDV48.69e-2680.26pentatricopeptide repeat-containing protein At5g13770, chloroplastic OS=Cucurbit... [more]
A0A6J1JST61.33e-2477.63pentatricopeptide repeat-containing protein At5g13770, chloroplastic isoform X2 ... [more]
BLAST of Cp4.1LG01g18760 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G13770.11.2e-1144.12Pentatricopeptide repeat (PPR-like) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 60..80
NoneNo IPR availablePANTHERPTHR47934PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIALcoord: 62..136
NoneNo IPR availablePANTHERPTHR47934:SF14OSJNBA0088A01.11 PROTEINcoord: 62..136
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 53..167
e-value: 2.2E-6
score: 29.3

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g18760.1Cp4.1LG01g18760.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0098869 cellular oxidant detoxification
biological_process GO:0009658 chloroplast organization
biological_process GO:0006979 response to oxidative stress
molecular_function GO:0020037 heme binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003729 mRNA binding
molecular_function GO:0004601 peroxidase activity
molecular_function GO:0005515 protein binding