Cp4.1LG01g18410 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g18410
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X2
Location	Cp4.1LG01: 15673876 .. 15675304 (-)
RNA-Seq Expression	Cp4.1LG01g18410
Synteny	Cp4.1LG01g18410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAATGTAATGATTTACCCTGGTGTCCTTGTGTGGTGTGGCCATGGAGAAAGAAAGATAAGAGAGAGAGAGAGAGAGAGAAGAAAAGGGTATGAATTATGATGGAGTTGTGGTTCTGGAAGTGAACAGAGTTCAGTTTTGAATATGAACTGCTCCCTTGGCCTCCACATCCCCAAGGCCCTGCCTTCTCTCTCCTCTTCCAAAACCATCTCTCCTTTTCTCTCCGCCCCCTTTAAGCTCCTCAAATTGCCATCCAAGCCAACCTCCATTAATGTCCTCTCCCTTTCTCTCTCTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTTTCTCTCTCTTAACATATATTTTCTTTCTGGGTTTAGTTTCAGGTGGTGGCAAGCATCAGAGAAGACCCCATTGCCTTTCTTCGCCAAAAGAAAACCAGTTTGTCTCTTCAATTTGCTGCCCTTTTAGCCACTGTAAGCAAGTTTCAAATGTTACCCTTTTGCTTTTTCTCATTCTGAATTTTGAAATTGGATTAAAAATGAAATCGGAACAGGTTGCGGAGCCGGCAACTGCTGTAACAGGGGACAACAACCATGAGGTTCCACTGACATGGATTTTGACACAATTAGGCATTGTTGGATTCTTTTACTTCCTTGTCTTTCCAGTATGAATTTCCCCAAATCATTTGGTTTCTTTTTTCTCCTCAGTTTCTTATGAAATTTGGTTGCATAAGATTTGGTTTTCTGGGTGAAATTTGCAGCCAATCATCATGAACTGGTTGAGGATAAGATGGTATAGAAGAAATTTGTTGGAAATGTATGTCCAATTCATGTGCGTCTTCCTTTGCTTCCCTGGGTACGTCCATTTATAACTACACCCCTTTCTTTTTTATTCCCATATCTTTCTTCTCTAAGTTGTGAGTGAACAAACTGTGCAGCATTCTATTGTGGGCGCCATTTCTGAACTTCAGAAAGTTCCCACGAGATCCATCGATGAAGTATCCATGGTCGACGCCCCAAGAGCCGTCTCAGATCAAAAATGGATACTTGAAGTACCCATTTGCCAAGCCTGAAGATTACGACTGGTAACTGTTTGTAAAAATGCCTCTTCCAATTTCCAAATTCAAACTCAACCTCCCTTCCCACGACCAACTGCTGCCTTTTTATTCAGCTCATTATGCTCTGTATTTTTGTATAATCGATGCTTCTAATGGAAATATATGGTCCTGTTGAATATTGTTGTTTGTTTCATGGGTCACTTAAGAGTGCACATTTGGTTCATTTTCTTGGCTTAGGATTAAACTGATATAAGGGAAGAATCCATAGCAAGATGTTCTGTACCATCTTATAATTGCCAGGTATAATGACACTGTGAGACACAGATGCCATTAGATGACTGAGCTAATTTGAGTCCAAGAAAATATTTCAGGGATCCAGAA

mRNA sequence

TGAAATGTAATGATTTACCCTGGTGTCCTTGTGTGGTGTGGCCATGGAGAAAGAAAGATAAGAGAGAGAGAGAGAGAGAGAAGAAAAGGGTATGAATTATGATGGAGTTGTGGTTCTGGAAGTGAACAGAGTTCAGTTTTGAATATGAACTGCTCCCTTGGCCTCCACATCCCCAAGGCCCTGCCTTCTCTCTCCTCTTCCAAAACCATCTCTCCTTTTCTCTCCGCCCCCTTTAAGCTCCTCAAATTGCCATCCAAGCCAACCTCCATTAATTTTCAGGTGGTGGCAAGCATCAGAGAAGACCCCATTGCCTTTCTTCGCCAAAAGAAAACCAGTTTGTCTCTTCAATTTGCTGCCCTTTTAGCCACTGTTGCGGAGCCGGCAACTGCTGTAACAGGGGACAACAACCATGAGGTTCCACTGACATGGATTTTGACACAATTAGGCATTGTTGGATTCTTTTACTTCCTTGTCTTTCCACCAATCATCATGAACTGGTTGAGGATAAGATGGTATAGAAGAAATTTGTTGGAAATGTATGTCCAATTCATGTGCGTCTTCCTTTGCTTCCCTGGCATTCTATTGTGGGCGCCATTTCTGAACTTCAGAAAGTTCCCACGAGATCCATCGATGAAGTATCCATGGTCGACGCCCCAAGAGCCGTCTCAGATCAAAAATGGATACTTGAAGTACCCATTTGCCAAGCCTGAAGATTACGACTGGTAACTGTTTGTAAAAATGCCTCTTCCAATTTCCAAATTCAAACTCAACCTCCCTTCCCACGACCAACTGCTGCCTTTTTATTCAGCTCATTATGCTCTGTATTTTTGTATAATCGATGCTTCTAATGGAAATATATGGTCCTGTTGAATATTGTTGTTTGTTTCATGGGTCACTTAAGAGTGCACATTTGGTTCATTTTCTTGGCTTAGGATTAAACTGATATAAGGGAAGAATCCATAGCAAGATGTTCTGTACCATCTTATAATTGCCAGGTATAATGACACTGTGAGACACAGATGCCATTAGATGACTGAGCTAATTTGAGTCCAAGAAAATATTTCAGGGATCCAGAA

Coding sequence (CDS)

ATGAACTGCTCCCTTGGCCTCCACATCCCCAAGGCCCTGCCTTCTCTCTCCTCTTCCAAAACCATCTCTCCTTTTCTCTCCGCCCCCTTTAAGCTCCTCAAATTGCCATCCAAGCCAACCTCCATTAATTTTCAGGTGGTGGCAAGCATCAGAGAAGACCCCATTGCCTTTCTTCGCCAAAAGAAAACCAGTTTGTCTCTTCAATTTGCTGCCCTTTTAGCCACTGTTGCGGAGCCGGCAACTGCTGTAACAGGGGACAACAACCATGAGGTTCCACTGACATGGATTTTGACACAATTAGGCATTGTTGGATTCTTTTACTTCCTTGTCTTTCCACCAATCATCATGAACTGGTTGAGGATAAGATGGTATAGAAGAAATTTGTTGGAAATGTATGTCCAATTCATGTGCGTCTTCCTTTGCTTCCCTGGCATTCTATTGTGGGCGCCATTTCTGAACTTCAGAAAGTTCCCACGAGATCCATCGATGAAGTATCCATGGTCGACGCCCCAAGAGCCGTCTCAGATCAAAAATGGATACTTGAAGTACCCATTTGCCAAGCCTGAAGATTACGACTGGTAA

Protein sequence

MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSKPTSINFQVVASIREDPIAFLRQKKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKYPFAKPEDYDW

Homology

[Close]

BLAST of Cp4.1LG01g18410 vs. ExPASy Swiss-Prot
Match: Q9CAC5 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhL PE=2 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 6.4e-49
Identity = 103/190 (54.21%), Postives = 128/190 (67.37%), Query Frame = 0


Query: 4   SLGLHIPKALPSLSSSKTISP-FLSAPFKLLKLPSKPTSINFQVVASIREDPIAFLRQKK 63
           SLGL+ P ALPSLS    + P  + +PF  +   +KP       V  +R      L  KK
Sbjct: 6   SLGLYAPNALPSLS----LKPRSVKSPF-CITSHTKPNDTLLHNVNKMRAKACDILGAKK 65

Query: 64  TSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIR 123
           T L+ Q  A+LAT+  PA A+TG NN +  L+ ++  +GI+  +YFLV PPIIMNWLR+R
Sbjct: 66  TILAAQLGAVLATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFLVMPPIIMNWLRVR 125

Query: 124 WYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLK 183
           WYRR   EMY+QFM VF+ FPG+LLWAPFLNFRKFPRDP+MK PW  P +P  IKN YLK
Sbjct: 126 WYRRKFFEMYLQFMFVFMFFPGLLLWAPFLNFRKFPRDPNMKNPWDKPTDPDSIKNVYLK 185

Query: 184 YPFAKPEDYD 193
           YP+A PEDYD
Sbjct: 186 YPYATPEDYD 189

[Close]

BLAST of Cp4.1LG01g18410 vs. ExPASy Swiss-Prot
Match: Q10W93 (NAD(P)H-quinone oxidoreductase subunit L OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=ndhL PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.4e-05
Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 107 YFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFR 156
           YFLV P I+  +L+ RWY  + +E    +  +FL FPG+L+ +PFLNFR
Sbjct: 22  YFLVMPAIVYAYLKTRWYVVSSIERVFMYFLMFLFFPGMLVLSPFLNFR 70

[Close]

BLAST of Cp4.1LG01g18410 vs. ExPASy Swiss-Prot
Match: Q7U620 (NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp. (strain WH8102) OX=84588 GN=ndhL PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.7e-05
Identity = 23/60 (38.33%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 96  ILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFR 155
           ++    ++G  Y LV P  +  W+  RW R   +E  + +  VFL FPG++++APFLNFR
Sbjct: 17  VILAYALLGGLYLLVVPLALFFWMNSRWTRMGKIERLLVYGLVFLFFPGMVVFAPFLNFR 76

[Close]

BLAST of Cp4.1LG01g18410 vs. ExPASy Swiss-Prot
Match: B0C6G0 (NAD(P)H-quinone oxidoreductase subunit L OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=ndhL PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 7.5e-05
Identity = 28/64 (43.75%), Postives = 38/64 (59.38%), Query Frame = 0


Query: 96  ILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFR 155
           ++  LG++G  Y LV P I   +L+ RWY  + LE    +  VF  FP +LL +PFLNFR
Sbjct: 5   LILLLGLLG-GYLLVMPAITYFYLQKRWYVASSLERGFMYFLVFFFFPSLLLLSPFLNFR 64

Query: 156 KFPR 160
             PR
Sbjct: 65  PQPR 67

[Close]

BLAST of Cp4.1LG01g18410 vs. ExPASy Swiss-Prot
Match: Q8DKZ3 (NAD(P)H-quinone oxidoreductase subunit L OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=ndhL PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 7.5e-05
Identity = 26/64 (40.62%), Postives = 34/64 (53.12%), Query Frame = 0


Query: 96  ILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFR 155
           +L   G +   Y LV P I+  +L  RWY  +  E    +  V   FPG+LL APF+NFR
Sbjct: 9   VLGVYGALAGLYLLVVPAIVYAYLNARWYVASSFERAFMYFLVTFFFPGLLLLAPFINFR 68

Query: 156 KFPR 160
             PR
Sbjct: 69  PQPR 72

[Close]

BLAST of Cp4.1LG01g18410 vs. NCBI nr
Match: XP_023527074.1 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 397 bits (1019), Expect = 1.78e-139
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSKPTSINFQVVASIREDPIAFLRQ 60
           MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSKPTSINFQVVASIREDPIAFLRQ
Sbjct: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSKPTSINFQVVASIREDPIAFLRQ 60

Query: 61  KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR 120
           KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR
Sbjct: 61  KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR 120

Query: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180
           IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY
Sbjct: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180

Query: 181 LKYPFAKPEDYDW 193
           LKYPFAKPEDYDW
Sbjct: 181 LKYPFAKPEDYDW 193

[Close]

BLAST of Cp4.1LG01g18410 vs. NCBI nr
Match: XP_022953622.1 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 389 bits (1000), Expect = 1.41e-136
Identity = 189/193 (97.93%), Postives = 190/193 (98.45%), Query Frame = 0


Query: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSKPTSINFQVVASIREDPIAFLRQ 60
           MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPS PTSI+FQVVA IREDPI FLRQ
Sbjct: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSNPTSISFQVVACIREDPIGFLRQ 60

Query: 61  KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR 120
           KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR
Sbjct: 61  KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR 120

Query: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180
           IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY
Sbjct: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180

Query: 181 LKYPFAKPEDYDW 193
           LKYPFAKPEDYDW
Sbjct: 181 LKYPFAKPEDYDW 193

[Close]

BLAST of Cp4.1LG01g18410 vs. NCBI nr
Match: KAG6601873.1 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 389 bits (1000), Expect = 1.41e-136
Identity = 189/193 (97.93%), Postives = 189/193 (97.93%), Query Frame = 0


Query: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSKPTSINFQVVASIREDPIAFLRQ 60
           MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPS PTSINFQVVA IREDPI FLRQ
Sbjct: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSNPTSINFQVVACIREDPIGFLRQ 60

Query: 61  KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR 120
           KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWIL QLGIVGFFYFLVFPPIIMNWLR
Sbjct: 61  KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILAQLGIVGFFYFLVFPPIIMNWLR 120

Query: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180
           IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY
Sbjct: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180

Query: 181 LKYPFAKPEDYDW 193
           LKYPFAKPEDYDW
Sbjct: 181 LKYPFAKPEDYDW 193

[Close]

BLAST of Cp4.1LG01g18410 vs. NCBI nr
Match: XP_023527082.1 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 387 bits (995), Expect = 7.59e-136
Identity = 191/193 (98.96%), Postives = 191/193 (98.96%), Query Frame = 0


Query: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSKPTSINFQVVASIREDPIAFLRQ 60
           MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSKPTSIN  VVASIREDPIAFLRQ
Sbjct: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSKPTSIN--VVASIREDPIAFLRQ 60

Query: 61  KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR 120
           KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR
Sbjct: 61  KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR 120

Query: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180
           IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY
Sbjct: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180

Query: 181 LKYPFAKPEDYDW 193
           LKYPFAKPEDYDW
Sbjct: 181 LKYPFAKPEDYDW 191

[Close]

BLAST of Cp4.1LG01g18410 vs. NCBI nr
Match: XP_022953630.1 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 380 bits (976), Expect = 5.99e-133
Identity = 187/193 (96.89%), Postives = 188/193 (97.41%), Query Frame = 0


Query: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSKPTSINFQVVASIREDPIAFLRQ 60
           MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPS PTSI+  VVA IREDPI FLRQ
Sbjct: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSNPTSIS--VVACIREDPIGFLRQ 60

Query: 61  KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR 120
           KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR
Sbjct: 61  KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR 120

Query: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180
           IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY
Sbjct: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180

Query: 181 LKYPFAKPEDYDW 193
           LKYPFAKPEDYDW
Sbjct: 181 LKYPFAKPEDYDW 191

[Close]

BLAST of Cp4.1LG01g18410 vs. ExPASy TrEMBL
Match: A0A6J1GNR4 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456098 PE=4 SV=1)

HSP 1 Score: 389 bits (1000), Expect = 6.82e-137
Identity = 189/193 (97.93%), Postives = 190/193 (98.45%), Query Frame = 0


Query: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSKPTSINFQVVASIREDPIAFLRQ 60
           MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPS PTSI+FQVVA IREDPI FLRQ
Sbjct: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSNPTSISFQVVACIREDPIGFLRQ 60

Query: 61  KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR 120
           KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR
Sbjct: 61  KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR 120

Query: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180
           IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY
Sbjct: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180

Query: 181 LKYPFAKPEDYDW 193
           LKYPFAKPEDYDW
Sbjct: 181 LKYPFAKPEDYDW 193

[Close]

BLAST of Cp4.1LG01g18410 vs. ExPASy TrEMBL
Match: A0A6J1GQ77 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456098 PE=4 SV=1)

HSP 1 Score: 380 bits (976), Expect = 2.90e-133
Identity = 187/193 (96.89%), Postives = 188/193 (97.41%), Query Frame = 0


Query: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSKPTSINFQVVASIREDPIAFLRQ 60
           MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPS PTSI+  VVA IREDPI FLRQ
Sbjct: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSNPTSIS--VVACIREDPIGFLRQ 60

Query: 61  KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR 120
           KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR
Sbjct: 61  KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR 120

Query: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180
           IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY
Sbjct: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180

Query: 181 LKYPFAKPEDYDW 193
           LKYPFAKPEDYDW
Sbjct: 181 LKYPFAKPEDYDW 191

[Close]

BLAST of Cp4.1LG01g18410 vs. ExPASy TrEMBL
Match: A0A6J1GQ88 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111456098 PE=4 SV=1)

HSP 1 Score: 363 bits (933), Expect = 7.87e-127
Identity = 179/193 (92.75%), Postives = 180/193 (93.26%), Query Frame = 0


Query: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSKPTSINFQVVASIREDPIAFLRQ 60
           MNCSLGLHIPKALPSLSS          PFKLLKLPS PTSI+FQVVA IREDPI FLRQ
Sbjct: 1   MNCSLGLHIPKALPSLSS----------PFKLLKLPSNPTSISFQVVACIREDPIGFLRQ 60

Query: 61  KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR 120
           KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR
Sbjct: 61  KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR 120

Query: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180
           IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY
Sbjct: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180

Query: 181 LKYPFAKPEDYDW 193
           LKYPFAKPEDYDW
Sbjct: 181 LKYPFAKPEDYDW 183

[Close]

BLAST of Cp4.1LG01g18410 vs. ExPASy TrEMBL
Match: A0A6J1JKK4 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487750 PE=4 SV=1)

HSP 1 Score: 360 bits (923), Expect = 2.64e-125
Identity = 179/193 (92.75%), Postives = 179/193 (92.75%), Query Frame = 0


Query: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSKPTSINFQVVASIREDPIAFLRQ 60
           MN SLGLHIPKALPSLSS          PFKLLKLPS  TSINFQVVASIREDPIAFLRQ
Sbjct: 1   MNFSLGLHIPKALPSLSS----------PFKLLKLPSNSTSINFQVVASIREDPIAFLRQ 60

Query: 61  KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR 120
           KKTSLSLQFAALLATVAEPA AVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR
Sbjct: 61  KKTSLSLQFAALLATVAEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR 120

Query: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180
           IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY
Sbjct: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180

Query: 181 LKYPFAKPEDYDW 193
           LKYPFAKPEDYDW
Sbjct: 181 LKYPFAKPEDYDW 183

[Close]

BLAST of Cp4.1LG01g18410 vs. ExPASy TrEMBL
Match: A0A6J1GNU1 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111456098 PE=4 SV=1)

HSP 1 Score: 354 bits (909), Expect = 3.35e-123
Identity = 177/193 (91.71%), Postives = 178/193 (92.23%), Query Frame = 0


Query: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSKPTSINFQVVASIREDPIAFLRQ 60
           MNCSLGLHIPKALPSLSS          PFKLLKLPS PTSI+  VVA IREDPI FLRQ
Sbjct: 1   MNCSLGLHIPKALPSLSS----------PFKLLKLPSNPTSIS--VVACIREDPIGFLRQ 60

Query: 61  KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR 120
           KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR
Sbjct: 61  KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR 120

Query: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180
           IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY
Sbjct: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180

Query: 181 LKYPFAKPEDYDW 193
           LKYPFAKPEDYDW
Sbjct: 181 LKYPFAKPEDYDW 181

[Close]

BLAST of Cp4.1LG01g18410 vs. TAIR 10
Match: AT1G70760.1 (inorganic carbon transport protein-related )

HSP 1 Score: 195.3 bits (495), Expect = 4.6e-50
Identity = 103/190 (54.21%), Postives = 128/190 (67.37%), Query Frame = 0


Query: 4   SLGLHIPKALPSLSSSKTISP-FLSAPFKLLKLPSKPTSINFQVVASIREDPIAFLRQKK 63
           SLGL+ P ALPSLS    + P  + +PF  +   +KP       V  +R      L  KK
Sbjct: 6   SLGLYAPNALPSLS----LKPRSVKSPF-CITSHTKPNDTLLHNVNKMRAKACDILGAKK 65

Query: 64  TSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIR 123
           T L+ Q  A+LAT+  PA A+TG NN +  L+ ++  +GI+  +YFLV PPIIMNWLR+R
Sbjct: 66  TILAAQLGAVLATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFLVMPPIIMNWLRVR 125

Query: 124 WYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLK 183
           WYRR   EMY+QFM VF+ FPG+LLWAPFLNFRKFPRDP+MK PW  P +P  IKN YLK
Sbjct: 126 WYRRKFFEMYLQFMFVFMFFPGLLLWAPFLNFRKFPRDPNMKNPWDKPTDPDSIKNVYLK 185

Query: 184 YPFAKPEDYD 193
           YP+A PEDYD
Sbjct: 186 YPYATPEDYD 189

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g18410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAC5	6.4e-49	54.21	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q10W93	4.4e-05	46.94	NAD(P)H-quinone oxidoreductase subunit L OS=Trichodesmium erythraeum (strain IMS...	[more]
Q7U620	5.7e-05	38.33	NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp. (strain WH8102) OX...	[more]
B0C6G0	7.5e-05	43.75	NAD(P)H-quinone oxidoreductase subunit L OS=Acaryochloris marina (strain MBIC 11...	[more]
Q8DKZ3	7.5e-05	40.63	NAD(P)H-quinone oxidoreductase subunit L OS=Thermosynechococcus elongatus (strai...	[more]

BLAST of Cp4.1LG01g18410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023527074.1	1.78e-139	100.00	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 [Cucurbita pe...	[more]
XP_022953622.1	1.41e-136	97.93	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 [Cucurbita mo...	[more]
KAG6601873.1	1.41e-136	97.93	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic, partial [Cucurbita argy...	[more]
XP_023527082.1	7.59e-136	98.96	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X2 [Cucurbita pe...	[more]
XP_022953630.1	5.99e-133	96.89	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X2 [Cucurbita mo...	[more]

BLAST of Cp4.1LG01g18410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GNR4	6.82e-137	97.93	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 OS=Cucurbita ...	[more]
A0A6J1GQ77	2.90e-133	96.89	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X2 OS=Cucurbita ...	[more]
A0A6J1GQ88	7.87e-127	92.75	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X3 OS=Cucurbita ...	[more]
A0A6J1JKK4	2.64e-125	92.75	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 OS=Cucurbita ...	[more]
A0A6J1GNU1	3.35e-123	91.71	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X4 OS=Cucurbita ...	[more]

BLAST of Cp4.1LG01g18410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70760.1	4.6e-50	54.21	inorganic carbon transport protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019654	NAD(P)H-quinone oxidoreductase subunit L	PFAM	PF10716	NdhL	coord: 88..160 e-value: 5.2E-29 score: 100.0
None	No IPR available	PANTHER	PTHR36727	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT L, CHLOROPLASTIC	coord: 1..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g18410.1	Cp4.1LG01g18410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010258	NADH dehydrogenase complex (plastoquinone) assembly
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
molecular_function	GO:0048038	quinone binding