Cp4.1LG01g18130 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
|
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGCTTCCTTTCTCTGTTTCGCATTGGAGGTATGTTGCATTTCTGTGCAATTTTCTTTCGGATTCAATTTTCAGACAAGTTTTTCTATCGACAAATTGGCATGTTGCTCAATTGAATTGCCACGCTTGTGTAAATCAATCGTTTTTGGAAGCTTTTTGCTGTTCAATTGTGATGTAATTGGGATCAATTCAAGTTAAGATGTATAAGAAATGTCGAAAGTTATTATTGAAGAATGTGTATCTTGTGAGTGGCTGTGTTCTTAAAATCACTTAGTTGCAAGATAACGATTCTTGATTTGTTCGTGAAGACTGGGTTTCTTGACAATGTTCATTCTTTTGAGATATTCTATGAATTTATTCTTACCTTTCTCCTGATACGTGCAATGGTAGGTAGACTCGGGGATAAATGGATTGGATATAACCAACCGCAGAGAATAGAAAGGTCGGTATCATTATTTATTTCTTCAAGCGGGGAACGTGTTGCAGTGGCTGCTGGAAATCAGATAACGATATTGCGGAAGGAAGATGACTACTTGGACTCATTCGGCATTTTTTTGGGTATTGTTTTTCTTATGAATTTCGATCTTCCCATGCATCAGCCACCAATGTTATCAGACACAGATAGTTGAATGGAGCTTCCTTTCTCTGTTTCGCATTGGAGTTGCAAGATAACGATTCTTGATTTGTTCGTGAAGACTGGGTTTCTTGACAATGTTCATTCTTTTGAGATATTCTATGAATTTATTCTTACCTTTCTCCTGATACGTGCAATGGTAGGTAGACTCGGGGATAAATGGATTGGATATAACCAACCGCAGAGAATAGAAAGGTCGGTATCATTATTTATTTCTTCAAGCGGGGAACGTGTTGCAGTGGCTGCTGGAAATCAGATAACGATATTGCGGAAGGAAGATGACTACTTGGACTCATTCGGCATTTTTTTGGGTATTGTTTTTCTTATGAATTTCGATCTTCCCATGCATCAGCCACCAATGTTATCAGACACAGATAGTTGA ATGGAGCTTCCTTTCTCTGTTTCGCATTGGAGTTGCAAGATAACGATTCTTGATTTGTTCGTGAAGACTGGGTTTCTTGACAATGTTCATTCTTTTGAGATATTCTATGAATTTATTCTTACCTTTCTCCTGATACGTGCAATGGTAGGTAGACTCGGGGATAAATGGATTGGATATAACCAACCGCAGAGAATAGAAAGGTCGGTATCATTATTTATTTCTTCAAGCGGGGAACGTGTTGCAGTGGCTGCTGGAAATCAGATAACGATATTGCGGAAGGAAGATGACTACTTGGACTCATTCGGCATTTTTTTGGGTATTGTTTTTCTTATGAATTTCGATCTTCCCATGCATCAGCCACCAATGTTATCAGACACAGATAGTTGA MELPFSVSHWSCKITILDLFVKTGFLDNVHSFEIFYEFILTFLLIRAMVGRLGDKWIGYNQPQRIERSVSLFISSSGERVAVAAGNQITILRKEDDYLDSFGIFLGIVFLMNFDLPMHQPPMLSDTDS Homology
BLAST of Cp4.1LG01g18130 vs. ExPASy Swiss-Prot
Match: Q9FIN7 (MAG2-interacting protein 2 OS=Arabidopsis thaliana OX=3702 GN=MIP2 PE=1 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 9.6e-09 Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 0
BLAST of Cp4.1LG01g18130 vs. NCBI nr
Match: XP_023531844.1 (MAG2-interacting protein 2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 118 bits (295), Expect = 8.98e-31 Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 0
BLAST of Cp4.1LG01g18130 vs. NCBI nr
Match: XP_022959283.1 (MAG2-interacting protein 2-like [Cucurbita moschata]) HSP 1 Score: 111 bits (278), Expect = 3.32e-28 Identity = 55/65 (84.62%), Postives = 60/65 (92.31%), Query Frame = 0
BLAST of Cp4.1LG01g18130 vs. NCBI nr
Match: XP_022971815.1 (MAG2-interacting protein 2 isoform X2 [Cucurbita maxima]) HSP 1 Score: 111 bits (278), Expect = 1.65e-25 Identity = 56/65 (86.15%), Postives = 59/65 (90.77%), Query Frame = 0
BLAST of Cp4.1LG01g18130 vs. NCBI nr
Match: XP_022971816.1 (MAG2-interacting protein 2 isoform X3 [Cucurbita maxima]) HSP 1 Score: 111 bits (278), Expect = 1.65e-25 Identity = 56/65 (86.15%), Postives = 59/65 (90.77%), Query Frame = 0
BLAST of Cp4.1LG01g18130 vs. NCBI nr
Match: XP_022971813.1 (MAG2-interacting protein 2 isoform X1 [Cucurbita maxima] >XP_022971814.1 MAG2-interacting protein 2 isoform X1 [Cucurbita maxima]) HSP 1 Score: 111 bits (278), Expect = 1.65e-25 Identity = 56/65 (86.15%), Postives = 59/65 (90.77%), Query Frame = 0
BLAST of Cp4.1LG01g18130 vs. ExPASy TrEMBL
Match: A0A6J1H5I1 (MAG2-interacting protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111460309 PE=4 SV=1) HSP 1 Score: 111 bits (278), Expect = 1.61e-28 Identity = 55/65 (84.62%), Postives = 60/65 (92.31%), Query Frame = 0
BLAST of Cp4.1LG01g18130 vs. ExPASy TrEMBL
Match: A0A6J1I6S6 (MAG2-interacting protein 2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470491 PE=4 SV=1) HSP 1 Score: 111 bits (278), Expect = 7.99e-26 Identity = 56/65 (86.15%), Postives = 59/65 (90.77%), Query Frame = 0
BLAST of Cp4.1LG01g18130 vs. ExPASy TrEMBL
Match: A0A6J1I490 (MAG2-interacting protein 2 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111470491 PE=4 SV=1) HSP 1 Score: 111 bits (278), Expect = 7.99e-26 Identity = 56/65 (86.15%), Postives = 59/65 (90.77%), Query Frame = 0
BLAST of Cp4.1LG01g18130 vs. ExPASy TrEMBL
Match: A0A6J1I823 (MAG2-interacting protein 2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470491 PE=4 SV=1) HSP 1 Score: 111 bits (278), Expect = 7.99e-26 Identity = 56/65 (86.15%), Postives = 59/65 (90.77%), Query Frame = 0
BLAST of Cp4.1LG01g18130 vs. ExPASy TrEMBL
Match: A0A6J1H784 (MAG2-interacting protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111460242 PE=4 SV=1) HSP 1 Score: 110 bits (276), Expect = 1.49e-25 Identity = 55/65 (84.62%), Postives = 58/65 (89.23%), Query Frame = 0
BLAST of Cp4.1LG01g18130 vs. TAIR 10
Match: AT5G24350.1 (CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39 (InterPro:IPR013244); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 61.2 bits (147), Expect = 6.8e-10 Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 0
BLAST of Cp4.1LG01g18130 vs. TAIR 10
Match: AT5G24350.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39 (InterPro:IPR013244). ) HSP 1 Score: 61.2 bits (147), Expect = 6.8e-10 Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|