Cp4.1LG01g18010 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g18010
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	zinc finger CCCH domain-containing protein 1
Location	Cp4.1LG01: 15336399 .. 15339529 (-)
RNA-Seq Expression	Cp4.1LG01g18010
Synteny	Cp4.1LG01g18010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAGTTTGAACGAAGTTTCTTTGGACGTTTTGAAGACGTTATGAGTTAACGCACAAGAACTTCAAATCGCTTAACCAACAGCTTTGATCGATATCCCTTTGCGACTCATTCACAACTTCAAGGGCTTTACAATTGGGAAAAGGACGGAAACCTAAAAACCCTAATTTCCTTCTTTTTAATTCGGGGACACCAGCCCTTCCGACCTTCTCTCTGCCGGGGCACCGAAACAGGTCCGCGGCCACGTTCTCACCTTTGGCAGTAAACTCCGACTCCTGACGGACACCCAGCACACGGCAGATCCGGCGGCGCGGGCGGCGTTGATAGACCCTCGAACGACCAGCTGCGAACAGGGAGACCCACAGCAGCGGGACCTCTCAATCTGCGACGGTGAGCCTAAATCTGACAGCCGCGGCTCCTACCCACAACCCTTACAAACCCTCCACGCCTATTTCGATCATCGGAGAGTTTGAGAGATAGTTTATTCAATTCGTTCTTTCTTGTTTTCAATTGTGGAATCTGCTTTAAAGTTTATTCAATTCGTTCTTTCTTGTTTTCAATTGTGGAATCTGCTTTAAATCCTTCTGGTCTTACTCGTACACAATGACAGATACAGGTGAAAATCAGCAGCCTGAACAAGGTATTAGCGATTTTTTCTCTATCCAAATATTTTAACGTGTATATAAGTTTTCGCATTTTCATCAAGAGGTTTCTTTTTTATTTTATTTTTATTTTTATTTTTTTATTTTTATGTTTATGATTTTTCTGAAATTAGTGACTCTCCATACGTTTTTAATCCTTTGATCTTCAGTCTGTAGCTTCTTCAAAAAACCCACAAAGAACAAAAACATTAGAAAGCGGACGGTTGATGAAGATGAAGAGGACTCTAAAAGTAGTGAGACTTCGGTGCTGCAAAATCAGAAAAAAGCCCCCAAGACAGATAGCAAACTTTATTTTTCTTCTGGGCCTTCTAAAAGTAACTTGACTAATGAGTCAAATGTGGAATCTGATAAACCAATTTTCCAATTTGAGTCTTCAAAAGAAATTCAAGTTCACCATGACAGCAGAGCCACTGCAACATTAGAAACAGAGACTGATTTCTCAAGAGATGCACGAGCCATACGTGAGAGAGTTTTGAAGCAAGCTGAGGAGGCTTTAAAGGGCAAAGGCAAGAGTTCTGGGGGTGAGAAGTTGTATAAAGGGGTCAATGCTTATGTGGATTACAAGGCTGGCTTTAGAAGGGAACATACAATTTCAAGTGAAAAAGCTGGTGGAGCTCATGGGCCGCTTAGAGCTTCTGCTCATATAAGAGCTTCAGCGAGATTTGATTATCAGCCTGATATTTGCAAGGATTACAAGGAGACTGGTTACTGTGGTTATGGAGATGCATGCAAGTTTATGCATGACCGAGGAGATTACAAGTCTGGGTGGCAGTTGGAAAAGGAATGGGAGGAAGTGGAAAAGGCAAGGAAGAGAAAACTAGCCATGAAATCTGATGACGGTGATGAGGATGCTGCAGAACAGAGTGATGAAGATGAGGAAGATGCCTTGCCCTTTGCTTGTTTTATTTGTCGTGAGCCATTTGTGGATCCTGTAGTGACCAAATGCAAACATTACTTCTGTGAGCATTGTGCACTAAAGGTAATACCTCTTTTCTGCTCTTAATTATGTCTTAATTATCTCGGCATCGTAAACATGTTTGATCTTGAAGTCCTTTCTTCTCTGGGAGGTTTAAATTTGTTTCAGAATTCAGTCTCGACTCTTGTTCCTTTTATTTTGATGCTTTTTATTTTGATGGCTGAAGCATTAGGATAATAAGCACGTATGTCAATTGATTTAATGACTTTGCATGCCTAGAGTTCATATCCTCAACTGCAGAAGTTCTGTATATTCTTGATTTGTTTTTCAAGAGCACACTTTTAGATGACCATTTCATCCTACGTCATTACATATTTGATTTCTTTGAAATGAATCTTAAATCATGTTATTTTTTTTCTTTTATAAAAATTTGCAGCACCATGCAAAGAATAAGAAATGCTTCGTTTGCAATCAGCCTACACTTGGAATCTTTAACACGGCTCATGAGATAAAGAAGAAGATGGCAGAGAGTAAGTAAGTTTTTTTTTTTTTCCTTGACCTGCATTGGTCCCTTGCCAGTCTTCTTTTAATTTGTAGCAAAATTATCTTTCTCTTGCTTATTTTTTTATGAGAAAGTCCAGTTTTCAATATCTACTTCTTGATGAAGCTTAAATTCATGCCCTGCTACAATAAGAGCTTGGAGAATCTTGGATAACATTTCTGGAAATGTGGGAATATGTCAGTGTAGAAGTAGTCCATGATGAATTTATTTCTGAATTTCATCCTCGGTAATGGATTATCTTTCTGTAAATATCCCTGAAGCCCCTCAATCTACTTGTGTTCCCCCCGTTTGAAACTGAAAACCACCACTCTGACTTTATAACATTTTCCCCCCTTAGAAGTTCATGAAATAGATAGATGGTCAGAAGTGGTTTTTAACTAGGACCTTTTGTTGAACTCATAAGTGGTTTTAATTATTCAATCTTAATTCCGGATGGTATCAAGTTATCTACTCAAATATTATATTGTTTGTATTTACATATATGATTGTGTTAAAGTGTCTGTTACTTCACTACTATTCACTTTTGGTGATTGGGTCTAAACATTATTCTCATTGAAGTTCTGTTCATATCTACCGTAGGTTACAGATTGTTAAAGTACTTGGATATTGAATGTCCATTACAGATATTCATCTTTAAACTTTGCATAACGCTTAGGGACGTGAATATCTAAATTGACTTAGATATTGATTCCAGTCTTTCTACTTCTTTTGGCATTTGGAAGTAAAATTATTTGTTTAATAAAATGGTGAATATCAGGGATTTTTAGGTGTTGATATATACAACATTTTAGAAACAATAGAACTGTAGATAAATTAGAAATGTAAGGTTGAGTGCTGGTCTTTCACTGTTTTACCTTTAGTTTTGGAGGCTCAGATGAATTTAGCAGTAGCCTGTTGCATTAGGTACACCTTTATTAAGCATCTTGAGAATGTGATGACTGTTGTGGAAAGTAAAGTAGTTATGGTTGAAGTTATGTCTCATCTTACCGTCTGA

mRNA sequence

TAAGTTTGAACGAAGTTTCTTTGGACGTTTTGAAGACGTTATGAGTTAACGCACAAGAACTTCAAATCGCTTAACCAACAGCTTTGATCGATATCCCTTTGCGACTCATTCACAACTTCAAGGGCTTTACAATTGGGAAAAGGACGGAAACCTAAAAACCCTAATTTCCTTCTTTTTAATTCGGGGACACCAGCCCTTCCGACCTTCTCTCTGCCGGGGCACCGAAACAGGTCCGCGGCCACGTTCTCACCTTTGGCAGTAAACTCCGACTCCTGACGGACACCCAGCACACGGCAGATCCGGCGGCGCGGGCGGCGTTGATAGACCCTCGAACGACCAGCTGCGAACAGGGAGACCCACAGCAGCGGGACCTCTCAATCTGCGACGGTGAGCCTAAATCTGACAGCCGCGGCTCCTACCCACAACCCTTACAAACCCTCCACGCCTATTTCGATCATCGGAGAGTTTGAGAGATAGTTTATTCAATTCGTTCTTTCTTGTTTTCAATTGTGGAATCTGCTTTAAAGTTTATTCAATTCGTTCTTTCTTGTTTTCAATTGTGGAATCTGCTTTAAATCCTTCTGGTCTTACTCGTACACAATGACAGATACAGGTGAAAATCAGCAGCCTGAACAAGTCTGTAGCTTCTTCAAAAAACCCACAAAGAACAAAAACATTAGAAAGCGGACGGTTGATGAAGATGAAGAGGACTCTAAAAGTAGTGAGACTTCGGTGCTGCAAAATCAGAAAAAAGCCCCCAAGACAGATAGCAAACTTTATTTTTCTTCTGGGCCTTCTAAAAGTAACTTGACTAATGAGTCAAATGTGGAATCTGATAAACCAATTTTCCAATTTGAGTCTTCAAAAGAAATTCAAGTTCACCATGACAGCAGAGCCACTGCAACATTAGAAACAGAGACTGATTTCTCAAGAGATGCACGAGCCATACGTGAGAGAGTTTTGAAGCAAGCTGAGGAGGCTTTAAAGGGCAAAGGCAAGAGTTCTGGGGGTGAGAAGTTGTATAAAGGGGTCAATGCTTATGTGGATTACAAGGCTGGCTTTAGAAGGGAACATACAATTTCAAGTGAAAAAGCTGGTGGAGCTCATGGGCCGCTTAGAGCTTCTGCTCATATAAGAGCTTCAGCGAGATTTGATTATCAGCCTGATATTTGCAAGGATTACAAGGAGACTGGTTACTGTGGTTATGGAGATGCATGCAAGTTTATGCATGACCGAGGAGATTACAAGTCTGGGTGGCAGTTGGAAAAGGAATGGGAGGAAGTGGAAAAGGCAAGGAAGAGAAAACTAGCCATGAAATCTGATGACGGTGATGAGGATGCTGCAGAACAGAGTGATGAAGATGAGGAAGATGCCTTGCCCTTTGCTTGTTTTATTTGTCGTGAGCCATTTGTGGATCCTGTAGTGACCAAATGCAAACATTACTTCTGTGAGCATTGTGCACTAAAGCACCATGCAAAGAATAAGAAATGCTTCGTTTGCAATCAGCCTACACTTGGAATCTTTAACACGGCTCATGAGATAAAGAAGAAGATGGCAGAGAGTAACTTAAATTCATGCCCTGCTACAATAAGAGCTTGGAGAATCTTGGATAACATTTCTGGAAATGTGGGAATATTTTTGGAGGCTCAGATGAATTTAGCAGTAGCCTGTTGCATTAGGTACACCTTTATTAAGCATCTTGAGAATGTGATGACTGTTGTGGAAAGTAAAGTAGTTATGGTTGAAGTTATGTCTCATCTTACCGTCTGA

Coding sequence (CDS)

ATGACAGATACAGGTGAAAATCAGCAGCCTGAACAAGTCTGTAGCTTCTTCAAAAAACCCACAAAGAACAAAAACATTAGAAAGCGGACGGTTGATGAAGATGAAGAGGACTCTAAAAGTAGTGAGACTTCGGTGCTGCAAAATCAGAAAAAAGCCCCCAAGACAGATAGCAAACTTTATTTTTCTTCTGGGCCTTCTAAAAGTAACTTGACTAATGAGTCAAATGTGGAATCTGATAAACCAATTTTCCAATTTGAGTCTTCAAAAGAAATTCAAGTTCACCATGACAGCAGAGCCACTGCAACATTAGAAACAGAGACTGATTTCTCAAGAGATGCACGAGCCATACGTGAGAGAGTTTTGAAGCAAGCTGAGGAGGCTTTAAAGGGCAAAGGCAAGAGTTCTGGGGGTGAGAAGTTGTATAAAGGGGTCAATGCTTATGTGGATTACAAGGCTGGCTTTAGAAGGGAACATACAATTTCAAGTGAAAAAGCTGGTGGAGCTCATGGGCCGCTTAGAGCTTCTGCTCATATAAGAGCTTCAGCGAGATTTGATTATCAGCCTGATATTTGCAAGGATTACAAGGAGACTGGTTACTGTGGTTATGGAGATGCATGCAAGTTTATGCATGACCGAGGAGATTACAAGTCTGGGTGGCAGTTGGAAAAGGAATGGGAGGAAGTGGAAAAGGCAAGGAAGAGAAAACTAGCCATGAAATCTGATGACGGTGATGAGGATGCTGCAGAACAGAGTGATGAAGATGAGGAAGATGCCTTGCCCTTTGCTTGTTTTATTTGTCGTGAGCCATTTGTGGATCCTGTAGTGACCAAATGCAAACATTACTTCTGTGAGCATTGTGCACTAAAGCACCATGCAAAGAATAAGAAATGCTTCGTTTGCAATCAGCCTACACTTGGAATCTTTAACACGGCTCATGAGATAAAGAAGAAGATGGCAGAGAGTAACTTAAATTCATGCCCTGCTACAATAAGAGCTTGGAGAATCTTGGATAACATTTCTGGAAATGTGGGAATATTTTTGGAGGCTCAGATGAATTTAGCAGTAGCCTGTTGCATTAGGTACACCTTTATTAAGCATCTTGAGAATGTGATGACTGTTGTGGAAAGTAAAGTAGTTATGGTTGAAGTTATGTCTCATCTTACCGTCTGA

Protein sequence

MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLYFSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKSDDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNTAHEIKKKMAESNLNSCPATIRAWRILDNISGNVGIFLEAQMNLAVACCIRYTFIKHLENVMTVVESKVVMVEVMSHLTV

Homology

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BLAST of Cp4.1LG01g18010 vs. ExPASy Swiss-Prot
Match: Q8GX84 (Zinc finger CCCH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=At1g01350 PE=2 SV=2)

HSP 1 Score: 478.0 bits (1229), Expect = 1.0e-133
Identity = 239/316 (75.63%), Postives = 271/316 (85.76%), Query Frame = 0


Query: 6   ENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKS-SETSVLQNQKKAPKTDSKLYFSSG 65
           +  Q +QVC+FFKKPTK+KNIRKRT+D DEED  S SE+S+LQN KK  K DSKLYFSSG
Sbjct: 22  QETQSQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSKLYFSSG 81

Query: 66  PSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVLKQA 125
           PSKS+ T     E  + +F ++SSKEIQV +DS ATATLETETDF++DARAIRERVLK+A
Sbjct: 82  PSKSSTTTSGAPE--RSVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVLKKA 141

Query: 126 EEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRASARF 185
           +EALKG  K +  EKLYKG++ Y D+KAGFRRE TISSEKAGG+HGPLRASAHIR SARF
Sbjct: 142 DEALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIRVSARF 201

Query: 186 DYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKSDDGD 245
           DYQPDICKDYKETGYCGYGD+CKF+HDRGDYK GWQ+EKEWEE EK RKR  AM  +D D
Sbjct: 202 DYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVEDED 261

Query: 246 EDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPT 305
           ++A + SDED E+ALPFACFICREPFVDPVVTKCKHYFCEHCALKHH KNKKCFVCNQPT
Sbjct: 262 DEADKDSDED-ENALPFACFICREPFVDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPT 321

Query: 306 LGIFNTAHEIKKKMAE 321
           +GIFN AHEIKK+MAE
Sbjct: 322 MGIFNAAHEIKKRMAE 334

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BLAST of Cp4.1LG01g18010 vs. ExPASy Swiss-Prot
Match: Q9FNG6 (Zinc finger CCCH domain-containing protein 51 OS=Arabidopsis thaliana OX=3702 GN=At5g06420 PE=2 SV=1)

HSP 1 Score: 474.6 bits (1220), Expect = 1.1e-132
Identity = 235/319 (73.67%), Postives = 270/319 (84.64%), Query Frame = 0


Query: 3   DTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKS-SETSVLQNQKKAPKTDSKLYF 62
           D   NQ+ +QVC+FFKKPTK+KNIRKRT+D DEED  S SE+S+LQN KK  K DS LYF
Sbjct: 57  DNSNNQESQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSNLYF 116

Query: 63  SSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVL 122
           SSGPS       ++   ++P+F ++SSKEIQV +DS ATATLETETDF++DARAIRERVL
Sbjct: 117 SSGPS-----TRTSGAPERPVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVL 176

Query: 123 KQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRAS 182
           K+A+ ALKG  K +  EKLYKG++ Y D+KAGFRRE TISSEKAGG+HGPLRASAHIR S
Sbjct: 177 KKADHALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIRVS 236

Query: 183 ARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKSD 242
           ARFDYQPDICKDYKETGYCGYGD+CKF+HDRGDYK GWQ+EKEWEE EK RKR  AM  +
Sbjct: 237 ARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVE 296

Query: 243 DGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCN 302
           D D++A + SDED E+ALPFACFICREPF+DPVVTKCKHYFCEHCALKHH KNKKCFVCN
Sbjct: 297 DDDDEADKDSDED-ENALPFACFICREPFLDPVVTKCKHYFCEHCALKHHTKNKKCFVCN 356

Query: 303 QPTLGIFNTAHEIKKKMAE 321
           QPT+GIFN AHEIKK+MAE
Sbjct: 357 QPTMGIFNAAHEIKKRMAE 369

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BLAST of Cp4.1LG01g18010 vs. ExPASy Swiss-Prot
Match: Q6K4V3 (Zinc finger CCCH domain-containing protein 15 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0301000 PE=2 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 5.5e-116
Identity = 214/317 (67.51%), Postives = 246/317 (77.60%), Query Frame = 0


Query: 13  VCSFFKKPTKNKNIRKR---TVDEDEEDSKSSETSVLQNQKKAPKTDSKLYFSSGPSKSN 72
           VCSF +KP   KNIRKR       D++D   S        KKAP + SKL+FSS      
Sbjct: 18  VCSFVRKPP--KNIRKRPTAPAGSDDDDEDGSGAIAAARAKKAPSSTSKLFFSS------ 77

Query: 73  LTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVLKQAEEALK 132
               ++  S+   FQ+ESS+ IQ   DSRATATLETET+F RDARAIRER LKQAEE+LK
Sbjct: 78  ----ADGSSEPRRFQYESSRTIQASTDSRATATLETETEFDRDARAIRERQLKQAEESLK 137

Query: 133 ------GKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRASAR 192
                      SG  ++YKG++ Y DYKAGFRREHT+SSEKAGG+HGPLRASAHIR SAR
Sbjct: 138 KNPSAPASSSGSGSGEVYKGIHGYTDYKAGFRREHTVSSEKAGGSHGPLRASAHIRLSAR 197

Query: 193 FDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKSDDG 252
           FDYQPDICKDYKETGYCGYGD+CKFMHDRGDYKSGWQ+EKEWEE EKARKR++AM  D  
Sbjct: 198 FDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQIEKEWEEAEKARKRRIAMGGDGS 257

Query: 253 DEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQP 312
           D +A E+ D+D+E+ALPFAC+ICREPFVDPVVTKCKHYFCEHCALKHH+KNKKCFVCN+P
Sbjct: 258 DYEAGEEDDDDDEEALPFACYICREPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCNKP 317

Query: 313 TLGIFNTAHEIKKKMAE 321
           TLGIFN A EI+KKMA+
Sbjct: 318 TLGIFNAAQEIRKKMAQ 322

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BLAST of Cp4.1LG01g18010 vs. ExPASy Swiss-Prot
Match: O15541 (E3 ubiquitin-protein ligase RNF113A OS=Homo sapiens OX=9606 GN=RNF113A PE=1 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.0e-49
Identity = 132/326 (40.49%), Postives = 185/326 (56.75%), Query Frame = 0


Query: 11  EQVCSF-FKKPTKN--KNIRKRTVDEDE--EDSKSSE--TSVLQNQKK---------APK 70
           +QVC+F FKKP +      RKR   + E  E   SS+   +V++ +KK           +
Sbjct: 12  DQVCTFLFKKPGRKGAAGRRKRPACDPEPGESGSSSDEGCTVVRPEKKRVTHNPMIQKTR 71

Query: 71  TDSKLYFSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDAR 130
              K   + G   S    E+  ES   +++   S +     D  ATA  E +T+  RDA+
Sbjct: 72  DSGKQKAAYGDLSSEEEEENEPESLGVVYKSTRSAKPVGPEDMGATAVYELDTEKERDAQ 131

Query: 131 AIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGG--AHGPL 190
           AI ER  K  EE L+GK      +K+Y+G+N Y  Y    + + T     + G    GP+
Sbjct: 132 AIFERSQKIQEE-LRGK----EDDKIYRGINNYQKY---MKPKDTSMGNASSGMVRKGPI 191

Query: 191 RASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKAR 250
           RA  H+RA+ R+DYQPDICKDYKETG+CG+GD+CKF+HDR DYK GWQ+E+E +E     
Sbjct: 192 RAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDE----- 251

Query: 251 KRKLAMKSDDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHA 310
             +  +  D+      E   +DEE  +PF CFICR+ F +PVVTKC+HYFCE CAL+H  
Sbjct: 252 -GRYGVYEDEN----YEVGSDDEE--IPFKCFICRQSFQNPVVTKCRHYFCESCALQHFR 311

Query: 311 KNKKCFVCNQPTLGIFNTAHEIKKKM 319
              +C+VC+Q T G+FN A E+  K+
Sbjct: 312 TTPRCYVCDQQTNGVFNPAKELIAKL 317

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BLAST of Cp4.1LG01g18010 vs. ExPASy Swiss-Prot
Match: Q67ER4 (E3 ubiquitin-protein ligase RNF113A OS=Bos taurus OX=9913 GN=RNF113A PE=2 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.6e-49
Identity = 130/326 (39.88%), Postives = 188/326 (57.67%), Query Frame = 0


Query: 11  EQVCSF-FKKPTKN--KNIRKRTV-DEDEEDSKSSE---TSVLQNQKKAPKTDSKLYFSS 70
           +QVC+F FKKP +      RKR + +++  DS SS     +V++ +KK    +  +  + 
Sbjct: 12  DQVCTFLFKKPGRKVAAGRRKRPICNQESGDSSSSSDEGNTVVRPEKKRAVHNPMIQKTR 71

Query: 71  GPSKSNLT---------NESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDAR 130
           G  K  +           E+  ES   +++   S +     D  ATA  E +T+  RDA+
Sbjct: 72  GSGKQKVAYGDLSSEEEEENKSESLGVVYKSTRSAKPVGPEDMGATAVYELDTEKERDAQ 131

Query: 131 AIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGG--AHGPL 190
           AI ER  K  EE L+G+      +K+Y+G+N   +Y+   + + T     + G    GP+
Sbjct: 132 AIFERSQKIQEE-LRGQ----EDDKIYRGIN---NYQKFMKPKDTSMGNASSGMVRKGPI 191

Query: 191 RASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKAR 250
           RA  H+RA+ R+DYQPDICKDYKETG+CG+GD+CKF+HDR DYK GWQ+E+E +E     
Sbjct: 192 RAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEGRYGV 251

Query: 251 KRKLAMKSDDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHA 310
                      DE+    SDE+E   +PF CFICR+ F +PVVTKC+HYFCE CAL+H  
Sbjct: 252 YE---------DENYEVGSDEEE---IPFKCFICRQTFQNPVVTKCRHYFCESCALQHFR 311

Query: 311 KNKKCFVCNQPTLGIFNTAHEIKKKM 319
              +C+VC+Q T G+FN A E+  K+
Sbjct: 312 TTPRCYVCDQQTNGVFNPAKELIAKL 317

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BLAST of Cp4.1LG01g18010 vs. NCBI nr
Match: KAG6601808.1 (Zinc finger CCCH domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 644 bits (1662), Expect = 7.24e-232
Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 0


Query: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLY 60
           MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLY
Sbjct: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLY 60

Query: 61  FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120
           FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV
Sbjct: 61  FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120

Query: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180
           LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA
Sbjct: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180

Query: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240
           SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS
Sbjct: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240

Query: 241 DDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC 300
           DDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC
Sbjct: 241 DDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC 300

Query: 301 NQPTLGIFNTAHEIKKKMAESN 322
           NQPTLGIFNTAHEIKKKMAESN
Sbjct: 301 NQPTLGIFNTAHEIKKKMAESN 322

[Close]

BLAST of Cp4.1LG01g18010 vs. NCBI nr
Match: XP_023548600.1 (zinc finger CCCH domain-containing protein 1 [Cucurbita pepo subsp. pepo] >XP_023548608.1 zinc finger CCCH domain-containing protein 1 [Cucurbita pepo subsp. pepo] >XP_023548618.1 zinc finger CCCH domain-containing protein 1 [Cucurbita pepo subsp. pepo] >KAG7032517.1 Zinc finger CCCH domain-containing protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 642 bits (1656), Expect = 4.24e-231
Identity = 321/321 (100.00%), Postives = 321/321 (100.00%), Query Frame = 0


Query: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLY 60
           MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLY
Sbjct: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLY 60

Query: 61  FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120
           FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV
Sbjct: 61  FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120

Query: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180
           LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA
Sbjct: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180

Query: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240
           SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS
Sbjct: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240

Query: 241 DDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC 300
           DDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC
Sbjct: 241 DDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC 300

Query: 301 NQPTLGIFNTAHEIKKKMAES 321
           NQPTLGIFNTAHEIKKKMAES
Sbjct: 301 NQPTLGIFNTAHEIKKKMAES 321

[Close]

BLAST of Cp4.1LG01g18010 vs. NCBI nr
Match: XP_022958735.1 (zinc finger CCCH domain-containing protein 1 [Cucurbita moschata])

HSP 1 Score: 639 bits (1649), Expect = 4.94e-230
Identity = 319/321 (99.38%), Postives = 321/321 (100.00%), Query Frame = 0


Query: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLY 60
           MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEE+SKS+ETSVLQNQKKAPKTDSKLY
Sbjct: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEESKSTETSVLQNQKKAPKTDSKLY 60

Query: 61  FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120
           FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV
Sbjct: 61  FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120

Query: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180
           LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA
Sbjct: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180

Query: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240
           SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS
Sbjct: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240

Query: 241 DDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC 300
           DDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC
Sbjct: 241 DDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC 300

Query: 301 NQPTLGIFNTAHEIKKKMAES 321
           NQPTLGIFNTAHEIKKKMAES
Sbjct: 301 NQPTLGIFNTAHEIKKKMAES 321

[Close]

BLAST of Cp4.1LG01g18010 vs. NCBI nr
Match: XP_022971769.1 (zinc finger CCCH domain-containing protein 1 [Cucurbita maxima])

HSP 1 Score: 635 bits (1638), Expect = 2.34e-228
Identity = 317/321 (98.75%), Postives = 319/321 (99.38%), Query Frame = 0


Query: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLY 60
           MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKS+ETSVLQNQKKAPKTDSKLY
Sbjct: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSTETSVLQNQKKAPKTDSKLY 60

Query: 61  FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120
           FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV
Sbjct: 61  FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120

Query: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180
           LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA
Sbjct: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180

Query: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240
           SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAM+S
Sbjct: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMRS 240

Query: 241 DDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC 300
           DDGDED AEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALK HAKNKKCFVC
Sbjct: 241 DDGDEDVAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKRHAKNKKCFVC 300

Query: 301 NQPTLGIFNTAHEIKKKMAES 321
           NQPTLGIFNTAHEIKKKMAES
Sbjct: 301 NQPTLGIFNTAHEIKKKMAES 321

[Close]

BLAST of Cp4.1LG01g18010 vs. NCBI nr
Match: XP_004149426.1 (zinc finger CCCH domain-containing protein 1 [Cucumis sativus] >KGN47699.1 hypothetical protein Csa_018272 [Cucumis sativus])

HSP 1 Score: 601 bits (1550), Expect = 5.97e-215
Identity = 297/321 (92.52%), Postives = 310/321 (96.57%), Query Frame = 0


Query: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLY 60
           MTDTG+ Q  EQVCSFF+KPTKNKNIRKRTVDEDEE+   +ETS L NQKKAPKT+SKLY
Sbjct: 1   MTDTGDTQPSEQVCSFFRKPTKNKNIRKRTVDEDEEEDSKAETSFLLNQKKAPKTESKLY 60

Query: 61  FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120
           FSSGPSK++ +NESNVE +KPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV
Sbjct: 61  FSSGPSKNSSSNESNVEPNKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120

Query: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180
           LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA
Sbjct: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180

Query: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240
           SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS
Sbjct: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240

Query: 241 DDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC 300
           DDGDED +EQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC
Sbjct: 241 DDGDEDTSEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC 300

Query: 301 NQPTLGIFNTAHEIKKKMAES 321
           NQPTLGIFNTAHEI+K+MA+S
Sbjct: 301 NQPTLGIFNTAHEIRKRMAQS 321

[Close]

BLAST of Cp4.1LG01g18010 vs. ExPASy TrEMBL
Match: A0A6J1H4B5 (zinc finger CCCH domain-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111459918 PE=4 SV=1)

HSP 1 Score: 639 bits (1649), Expect = 2.39e-230
Identity = 319/321 (99.38%), Postives = 321/321 (100.00%), Query Frame = 0


Query: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLY 60
           MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEE+SKS+ETSVLQNQKKAPKTDSKLY
Sbjct: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEESKSTETSVLQNQKKAPKTDSKLY 60

Query: 61  FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120
           FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV
Sbjct: 61  FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120

Query: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180
           LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA
Sbjct: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180

Query: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240
           SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS
Sbjct: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240

Query: 241 DDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC 300
           DDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC
Sbjct: 241 DDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC 300

Query: 301 NQPTLGIFNTAHEIKKKMAES 321
           NQPTLGIFNTAHEIKKKMAES
Sbjct: 301 NQPTLGIFNTAHEIKKKMAES 321

[Close]

BLAST of Cp4.1LG01g18010 vs. ExPASy TrEMBL
Match: A0A6J1I9H7 (zinc finger CCCH domain-containing protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111470453 PE=4 SV=1)

HSP 1 Score: 635 bits (1638), Expect = 1.14e-228
Identity = 317/321 (98.75%), Postives = 319/321 (99.38%), Query Frame = 0


Query: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLY 60
           MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKS+ETSVLQNQKKAPKTDSKLY
Sbjct: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSTETSVLQNQKKAPKTDSKLY 60

Query: 61  FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120
           FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV
Sbjct: 61  FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120

Query: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180
           LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA
Sbjct: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180

Query: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240
           SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAM+S
Sbjct: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMRS 240

Query: 241 DDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC 300
           DDGDED AEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALK HAKNKKCFVC
Sbjct: 241 DDGDEDVAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKRHAKNKKCFVC 300

Query: 301 NQPTLGIFNTAHEIKKKMAES 321
           NQPTLGIFNTAHEIKKKMAES
Sbjct: 301 NQPTLGIFNTAHEIKKKMAES 321

[Close]

BLAST of Cp4.1LG01g18010 vs. ExPASy TrEMBL
Match: A0A0A0KFS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G382870 PE=4 SV=1)

HSP 1 Score: 601 bits (1550), Expect = 2.89e-215
Identity = 297/321 (92.52%), Postives = 310/321 (96.57%), Query Frame = 0


Query: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLY 60
           MTDTG+ Q  EQVCSFF+KPTKNKNIRKRTVDEDEE+   +ETS L NQKKAPKT+SKLY
Sbjct: 1   MTDTGDTQPSEQVCSFFRKPTKNKNIRKRTVDEDEEEDSKAETSFLLNQKKAPKTESKLY 60

Query: 61  FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120
           FSSGPSK++ +NESNVE +KPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV
Sbjct: 61  FSSGPSKNSSSNESNVEPNKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120

Query: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180
           LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA
Sbjct: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180

Query: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240
           SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS
Sbjct: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240

Query: 241 DDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC 300
           DDGDED +EQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC
Sbjct: 241 DDGDEDTSEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC 300

Query: 301 NQPTLGIFNTAHEIKKKMAES 321
           NQPTLGIFNTAHEI+K+MA+S
Sbjct: 301 NQPTLGIFNTAHEIRKRMAQS 321

[Close]

BLAST of Cp4.1LG01g18010 vs. ExPASy TrEMBL
Match: A0A1S3CS03 (zinc finger CCCH domain-containing protein 1 OS=Cucumis melo OX=3656 GN=LOC103504086 PE=4 SV=1)

HSP 1 Score: 600 bits (1546), Expect = 1.18e-214
Identity = 297/321 (92.52%), Postives = 310/321 (96.57%), Query Frame = 0


Query: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLY 60
           MTDTG+ Q  EQVCSFF+KPTKNKNIRKRTVDEDEE+   +ETS L NQKKAPKT+SKLY
Sbjct: 1   MTDTGDTQPSEQVCSFFRKPTKNKNIRKRTVDEDEEEDSKAETSFLLNQKKAPKTESKLY 60

Query: 61  FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120
           FSSGPSK++L+NESNVE +KPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV
Sbjct: 61  FSSGPSKNSLSNESNVEPNKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120

Query: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180
           LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA
Sbjct: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180

Query: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240
           SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS
Sbjct: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240

Query: 241 DDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC 300
           DDGDED++EQSDEDEE ALPFACFICREPFVDPVVTKC HYFCEHCALKHHAKNKKCFVC
Sbjct: 241 DDGDEDSSEQSDEDEEGALPFACFICREPFVDPVVTKCGHYFCEHCALKHHAKNKKCFVC 300

Query: 301 NQPTLGIFNTAHEIKKKMAES 321
           NQPTLGIFNTAHEI+KKMA+S
Sbjct: 301 NQPTLGIFNTAHEIRKKMAQS 321

[Close]

BLAST of Cp4.1LG01g18010 vs. ExPASy TrEMBL
Match: A0A6J1BYC6 (zinc finger CCCH domain-containing protein 1 OS=Momordica charantia OX=3673 GN=LOC111006576 PE=4 SV=1)

HSP 1 Score: 598 bits (1541), Expect = 7.04e-214
Identity = 298/322 (92.55%), Postives = 312/322 (96.89%), Query Frame = 0


Query: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLY 60
           MTDTGENQQPEQVCSFFKKPTKNKNIRKRT+DEDEE+   +ETS+L NQKKA KT+SKLY
Sbjct: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTIDEDEEEDSKTETSLLLNQKKALKTESKLY 60

Query: 61  FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120
           FSSGPSKS+L+NESNVESDKPIFQFESSKEIQVHHDS+ATATLETET+FSRDARAIRERV
Sbjct: 61  FSSGPSKSSLSNESNVESDKPIFQFESSKEIQVHHDSKATATLETETEFSRDARAIRERV 120

Query: 121 LKQAEEALKGKGKSSGGEK-LYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIR 180
           LKQA+EALKGKGKSSG EK LYKGVNAYVDYKAGFRRE TISSEKAGGAHGPLRASAHIR
Sbjct: 121 LKQADEALKGKGKSSGDEKKLYKGVNAYVDYKAGFRREQTISSEKAGGAHGPLRASAHIR 180

Query: 181 ASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMK 240
           ASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAM 
Sbjct: 181 ASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMG 240

Query: 241 SDDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFV 300
           SD+GDED AEQSDEDEEDALPFACFICREPFVDPV+TKCKHYFCEHCALKHHAKNKKCFV
Sbjct: 241 SDEGDEDTAEQSDEDEEDALPFACFICREPFVDPVMTKCKHYFCEHCALKHHAKNKKCFV 300

Query: 301 CNQPTLGIFNTAHEIKKKMAES 321
           CNQPTLGIFNTAHEI+KKMA+S
Sbjct: 301 CNQPTLGIFNTAHEIRKKMAQS 322

[Close]

BLAST of Cp4.1LG01g18010 vs. TAIR 10
Match: AT1G01350.1 (Zinc finger (CCCH-type/C3HC4-type RING finger) family protein )

HSP 1 Score: 478.0 bits (1229), Expect = 7.1e-135
Identity = 239/316 (75.63%), Postives = 271/316 (85.76%), Query Frame = 0


Query: 6   ENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKS-SETSVLQNQKKAPKTDSKLYFSSG 65
           +  Q +QVC+FFKKPTK+KNIRKRT+D DEED  S SE+S+LQN KK  K DSKLYFSSG
Sbjct: 22  QETQSQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSKLYFSSG 81

Query: 66  PSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVLKQA 125
           PSKS+ T     E  + +F ++SSKEIQV +DS ATATLETETDF++DARAIRERVLK+A
Sbjct: 82  PSKSSTTTSGAPE--RSVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVLKKA 141

Query: 126 EEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRASARF 185
           +EALKG  K +  EKLYKG++ Y D+KAGFRRE TISSEKAGG+HGPLRASAHIR SARF
Sbjct: 142 DEALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIRVSARF 201

Query: 186 DYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKSDDGD 245
           DYQPDICKDYKETGYCGYGD+CKF+HDRGDYK GWQ+EKEWEE EK RKR  AM  +D D
Sbjct: 202 DYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVEDED 261

Query: 246 EDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPT 305
           ++A + SDED E+ALPFACFICREPFVDPVVTKCKHYFCEHCALKHH KNKKCFVCNQPT
Sbjct: 262 DEADKDSDED-ENALPFACFICREPFVDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPT 321

Query: 306 LGIFNTAHEIKKKMAE 321
           +GIFN AHEIKK+MAE
Sbjct: 322 MGIFNAAHEIKKRMAE 334

[Close]

BLAST of Cp4.1LG01g18010 vs. TAIR 10
Match: AT5G06420.1 (Zinc finger (CCCH-type/C3HC4-type RING finger) family protein )

HSP 1 Score: 474.6 bits (1220), Expect = 7.9e-134
Identity = 235/319 (73.67%), Postives = 270/319 (84.64%), Query Frame = 0


Query: 3   DTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKS-SETSVLQNQKKAPKTDSKLYF 62
           D   NQ+ +QVC+FFKKPTK+KNIRKRT+D DEED  S SE+S+LQN KK  K DS LYF
Sbjct: 57  DNSNNQESQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSNLYF 116

Query: 63  SSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVL 122
           SSGPS       ++   ++P+F ++SSKEIQV +DS ATATLETETDF++DARAIRERVL
Sbjct: 117 SSGPS-----TRTSGAPERPVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVL 176

Query: 123 KQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRAS 182
           K+A+ ALKG  K +  EKLYKG++ Y D+KAGFRRE TISSEKAGG+HGPLRASAHIR S
Sbjct: 177 KKADHALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIRVS 236

Query: 183 ARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKSD 242
           ARFDYQPDICKDYKETGYCGYGD+CKF+HDRGDYK GWQ+EKEWEE EK RKR  AM  +
Sbjct: 237 ARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVE 296

Query: 243 DGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCN 302
           D D++A + SDED E+ALPFACFICREPF+DPVVTKCKHYFCEHCALKHH KNKKCFVCN
Sbjct: 297 DDDDEADKDSDED-ENALPFACFICREPFLDPVVTKCKHYFCEHCALKHHTKNKKCFVCN 356

Query: 303 QPTLGIFNTAHEIKKKMAE 321
           QPT+GIFN AHEIKK+MAE
Sbjct: 357 QPTMGIFNAAHEIKKRMAE 369

[Close]

BLAST of Cp4.1LG01g18010 vs. TAIR 10
Match: AT5G06420.2 (Zinc finger (CCCH-type/C3HC4-type RING finger) family protein )

HSP 1 Score: 474.6 bits (1220), Expect = 7.9e-134
Identity = 235/319 (73.67%), Postives = 270/319 (84.64%), Query Frame = 0


Query: 3   DTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKS-SETSVLQNQKKAPKTDSKLYF 62
           D   NQ+ +QVC+FFKKPTK+KNIRKRT+D DEED  S SE+S+LQN KK  K DS LYF
Sbjct: 57  DNSNNQESQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSNLYF 116

Query: 63  SSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVL 122
           SSGPS       ++   ++P+F ++SSKEIQV +DS ATATLETETDF++DARAIRERVL
Sbjct: 117 SSGPS-----TRTSGAPERPVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVL 176

Query: 123 KQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRAS 182
           K+A+ ALKG  K +  EKLYKG++ Y D+KAGFRRE TISSEKAGG+HGPLRASAHIR S
Sbjct: 177 KKADHALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIRVS 236

Query: 183 ARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKSD 242
           ARFDYQPDICKDYKETGYCGYGD+CKF+HDRGDYK GWQ+EKEWEE EK RKR  AM  +
Sbjct: 237 ARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVE 296

Query: 243 DGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCN 302
           D D++A + SDED E+ALPFACFICREPF+DPVVTKCKHYFCEHCALKHH KNKKCFVCN
Sbjct: 297 DDDDEADKDSDED-ENALPFACFICREPFLDPVVTKCKHYFCEHCALKHHTKNKKCFVCN 356

Query: 303 QPTLGIFNTAHEIKKKMAE 321
           QPT+GIFN AHEIKK+MAE
Sbjct: 357 QPTMGIFNAAHEIKKRMAE 369

[Close]

BLAST of Cp4.1LG01g18010 vs. TAIR 10
Match: AT4G01023.1 (RING/U-box superfamily protein )

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-23
Identity = 53/112 (47.32%), Postives = 73/112 (65.18%), Query Frame = 0


Query: 209 MHDRGDYKSGWQLEKEWEEVEKARKRKLAMKSDDGDEDAAEQSDEDEEDALPFACFICRE 268
           + D        +LEK  ++++K   RKL        E     + E+++DALP AC IC+ 
Sbjct: 40  VEDEDSNNESSRLEKLEKKIKKETARKL--------ETDFVLTGEEDDDALPLACSICQN 99

Query: 269 PFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNTAHEIKKKMAE 321
           PF+DPVVT C HYFC+ CALKHH +N  CFVCN+PTLG+F+TA EIK+++ E
Sbjct: 100 PFLDPVVTNCNHYFCDKCALKHHTENDTCFVCNEPTLGLFDTAVEIKERIEE 143

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g18010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GX84	1.0e-133	75.63	Zinc finger CCCH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9FNG6	1.1e-132	73.67	Zinc finger CCCH domain-containing protein 51 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q6K4V3	5.5e-116	67.51	Zinc finger CCCH domain-containing protein 15 OS=Oryza sativa subsp. japonica OX...	[more]
O15541	2.0e-49	40.49	E3 ubiquitin-protein ligase RNF113A OS=Homo sapiens OX=9606 GN=RNF113A PE=1 SV=1	[more]
Q67ER4	2.6e-49	39.88	E3 ubiquitin-protein ligase RNF113A OS=Bos taurus OX=9913 GN=RNF113A PE=2 SV=1	[more]

BLAST of Cp4.1LG01g18010 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601808.1	7.24e-232	100.00	Zinc finger CCCH domain-containing protein 1, partial [Cucurbita argyrosperma su...	[more]
XP_023548600.1	4.24e-231	100.00	zinc finger CCCH domain-containing protein 1 [Cucurbita pepo subsp. pepo] >XP_02...	[more]
XP_022958735.1	4.94e-230	99.38	zinc finger CCCH domain-containing protein 1 [Cucurbita moschata]	[more]
XP_022971769.1	2.34e-228	98.75	zinc finger CCCH domain-containing protein 1 [Cucurbita maxima]	[more]
XP_004149426.1	5.97e-215	92.52	zinc finger CCCH domain-containing protein 1 [Cucumis sativus] >KGN47699.1 hypot...	[more]

BLAST of Cp4.1LG01g18010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H4B5	2.39e-230	99.38	zinc finger CCCH domain-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1I9H7	1.14e-228	98.75	zinc finger CCCH domain-containing protein 1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A0A0KFS0	2.89e-215	92.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G382870 PE=4 SV=1	[more]
A0A1S3CS03	1.18e-214	92.52	zinc finger CCCH domain-containing protein 1 OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
A0A6J1BYC6	7.04e-214	92.55	zinc finger CCCH domain-containing protein 1 OS=Momordica charantia OX=3673 GN=L...	[more]

BLAST of Cp4.1LG01g18010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01350.1	7.1e-135	75.63	Zinc finger (CCCH-type/C3HC4-type RING finger) family protein	[more]
AT5G06420.1	7.9e-134	73.67	Zinc finger (CCCH-type/C3HC4-type RING finger) family protein	[more]
AT5G06420.2	7.9e-134	73.67	Zinc finger (CCCH-type/C3HC4-type RING finger) family protein	[more]
AT4G01023.1	1.5e-23	47.32	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 185..212 e-value: 1.8E-7 score: 40.8
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 186..211 e-value: 8.0E-10 score: 38.4
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 185..213 score: 14.577143
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 263..300 e-value: 8.2E-5 score: 32.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 263..301 score: 10.571388
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 262..304 e-value: 7.1E-9 score: 35.4
None	No IPR available	GENE3D	4.10.1000.10		coord: 183..217 e-value: 2.3E-6 score: 28.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..102
None	No IPR available	PANTHER	PTHR12930:SF9	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE	coord: 1..322
None	No IPR available	CDD	cd16539	RING-HC_RNF113A_B	coord: 261..301 e-value: 6.53091E-25 score: 93.8343
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 262..306
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 261..320 e-value: 8.5E-16 score: 59.3
IPR039971	Pre-mRNA-splicing factor CWC24-like	PANTHER	PTHR12930	ZINC FINGER PROTEIN 183	coord: 1..322
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 278..287
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 184..216

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g18010.1	Cp4.1LG01g18010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034247	snoRNA splicing
cellular_component	GO:0000932	P-body
cellular_component	GO:0005684	U2-type spliceosomal complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding