Cp4.1LG01g17950 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g17950
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	GDT1 family protein
Location	Cp4.1LG01: 14663352 .. 14673939 (+)
RNA-Seq Expression	Cp4.1LG01g17950
Synteny	Cp4.1LG01g17950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTCTTCATTCGCAAAGAGGAAGAAGCCAAAAAGGCCTTTCTCCAAAATCCCTCTTTTTCCCTTCGTCTGGTTCTGAACTTCCAAGGGGACTTGGTGAGTTACACAGCCACTGATCCGTTTCATCCCACTTTGGGGATTCGGAGCCTGTCGGAGAATCCATACTCTGACGCTCCTTTCTAATCTTCACTTCCTTCTTCTCCTCACTCGCCTCTTCACCTCCTTTGTTCTCCACCGATCGCGATGGCCACATCCATCATCCAGGTGTTTCATCTCTCTTATTCAAATTTCGCTGATTCTCTTCGGATTTTTTTCTCTATTTAATCTCATGATTTTTTTCTTCCTTTTGCTTTGCTTTCTTAGGGTTTTACGAAGTCGCTTGCGATGACTGTGCTCTCCGAGATCGGGGATAAAACATTCTTCGCTGCTGCGGTTAGTTGATCCTTGTGAATTTCTGTTTTTTTTTTTTAATTTATTTTTTCCATAAATCTGTAACTAGTGTCTTCTGGTATAAGCTAGCCATCCGTTTTTATCCGAAAGTTGACTTCGAAATGGAATATGTATGCCGTGCCATTTCGCTTAGTGGATTTTAAAGTTTGTTTTAGGATTACGTTTTGTAGTTATCGGCTTAATTGCTTATTAGTGCGAGTGGGGACTTATTTGAGGCCCACAAGGAAGCATTTTCCCCCTTTTTTCAAGCATAAGTTCCTTCCTGATAAAGCACTTTTAGTCGTTTGCGGTGTGGATCTTCTACTCGTTCTTGATGACTTTTCTCCCCGCTTCCCTGGTGACGGAAATGCGATTCGGTTGTTTTGCCTAGACATTGTTCCTGTCGCTGTTGGTTTCCCCCTTGTTTTCCTCACTTTCACCAAGTTGGTCAAAGTTTCTCTTTTGATACATTCGTACATGGATATGTTCAAAGGAGAATACCGAATTGTACACTCTTATAACTTTTTGACTTGTTTAGTTACTGACGATTGTGTTCCACACTTAAAGGAGCTGCATAACCCAATAACAAAATACTTGTATGCTTCATTAACAACAAGTTGGGAAAGTGGTGACTCATAGTGGGGCTTGATGCATTTCAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAACCANTGCAAAAATTGTTCTAGCAGGGCTATTTTTATAAAACGGTTTTTAATATATATTTTTAAAAAGAAAGTGAAAAACTGATTTTTTCTTTATTTTTTATTTTTTATGCAAGCACTGCAATTTCATTTGACGCTATGGTGTCATAAAATCATGAATTTGAAGTAATATATTTGGTTTTATCTGTTATGTGAAAGACCTAGGTATCGCAAGTCGTCATGGAGGACATTTTAGCACCATATGATTTGTGATTTGTTTTAGAGAGGGGTCCTTGTACTCAAGTCTTGATAAGATTAAACTGCCGAAATTTGTCTACAATTTTTTTGATGTATTTCTCAACTCTTTTTGAATAAATATTGTTTTCCTAATAGTTTTCTACGAAATTCCGAATGCCGACTCACTTCTCATGTTTTAATCCTCTGTTTAAAGATCATGGCAATGCGGCATCCAAGGAGACTTGTCTTGTCTGGTTGTCTGTCGGCTTTGATTGTAAGTATGTTCGTCAAAAGTTGTCATACATCGTTTCTTCATTGCATGTGCCTTTACCAGCTTCCCTGTCTACGTCATTGCATCTAACATAGTACTTTTTCTGTTTTGAAGGTAATGACCATTCTTTCTGCTCTGGTTGGTTGGGCTGCACCAAATCTGGTAAGAAAATTGATCGCTCAAATTGAATGCTTCATACTTGCCTGTTTAATTTCTTTTACCTGCTAGGGCTTGAATGAGTGACAATTTTAAGTGCAGCTTCTTTATGCATTTGTTGCAGATGTTAATTTTGCATGGCTATTTGTTGTCTGTGCTTAATATTGTGGGATGCAAAAATAGTAGATTTGCAATGTTGAAGTATAAAACCAACTGTCAAGTTACTTAGATTTTTTTTTTGCTCTGTTGAAGGGCAGAAGCCTTCACGAATGCAATTAGAAATAAGGTCTTGATATGCTATGTGGCATTGGTAAGTTGGAGTATTAAAGCATTCATCTGAATGAATTTCTTTTCGACAAATAATTTGAGAGTTTTAAACTTGCAATGGTATGGTACTTCTTTGAGCTCTTGATATCATCTTAGGCAATTTTAGCTACTATCATTCTTATTGTTAAGCCTAAATGATACCATTTCTTTGGTTTTCTAGAACAAGAATCATTTTTGGACTCTCTCAGGTCCTTTCTTCCCCAGTTCTTCTTTGCATTGTGATGTACTCTAATTTTATGCAGATTTCACGTAAATGGACTCATCATGTAACAACGCTATTGTTCCTTGGTTTTGGACTGTGGTCTTTGTGGGATGCATTTAATGATGGAGGGTAATGATTCCTTTGTTATTTTATATTTTTTCTCCAAATAGTACTTTAATTTTATGTGTGCATATAAGTAACCAAATCAACAGCTGTCTCCACTGACTCTGCTTTGTTTATATTTTATTGGCAGGGAGTCTGAAGAATTGGCTGAAGTTGAAGCTAGATTGGTTAGTTTTTTAATTTTTTTAAATCCCTTCTGCACACACGCAGGTGGGAATCCATTTCTTTACTCAGGTGTCTCTTGTGCTTAGGATGCTGATCTGAAGGCTAACAAAAAAGGTTCCAAAGATGGCAATAAGGTATATTGTACTATCAGAAAGAGATTATACGTCCTCTTACCCCTTATAAACTGTCATCCAGTCTCGTCATTTCAAAAAGTTTATTGTGTTCTATTGTGTTAATATAAAAAGTTCAACAAGTTCTACTTGACATCTTGTAAGGATTTGAGAGGACTCCTAGATGCATGATGTGAATCTGCTTCCTGTAGTCATTTTTTCTTATATCTTCTTTACACATTTGATAGCGCATATCCTTTGCTTTCTCTCACAGGCAATCTATGGTCTGCCTAACCTCCCTCCATCTCTGAATTATTATAACGTTTTCTGTTTTGATCTCAGATGAACATAGACCAACTATATTAAGATGATTGAGAGTTTAGAAACCTTCTTGCAGATTGTTGATATAAATCTCTCCCTCTCTAAATTGATTGTTATTCTTACTGTTTTGTTACGGTATAAAACACTTGTTGAATTTATTTTTACAGAAGTAAGGAGAAGCTATAGTATTTCTATTTTCATTTATGGATTTGCATGTGGAAATTGTTGATATATGGATAATCGCATGGTAATTTGGCATCATAACACTTGACCTCATGACAGGTTGATGATGATGATGTGAAGAAACAGAATCGGTCATTTCTCTTGCAGTTCTTGTCACCAATATATTTAAAGGTTATATTTTTCAGCCTTTGATAATTCAGTCAAATATAGTTGTAAGATTTATTAACTTTCCAATTTTTCCCTTGAGTTTCTGCAGGCATTTTCCATTACCTTTTTTGGCGAATGGGGTGACAAGAGTCAGGTAAGTACCAAAACTGAGAATGACCCTTTCTATCTAACTTGTCGTTTCACTCCAAAGTACTAAGATTTTGCTGCCTTTGTCAGTTAGCAACGATTGGCTTAGCTGCAGATGAAGACCCAGTTGGTGTTGTTCTTGGTGGAATTTTGTAAGTTGTGCCTATGAACTGTACCCTTGTATTTGAGATCGGTTCTTCTTGTATGAGGCTATTCCTATCTTCAGTGTTTTTCCAATATAGACTCCACTTTGTCCTATGAGCGTCAAATGTGTTTTGCATTCATTTATAGAATTCGTTGTGTGCATGATAGAAAAAAGAAACTTCAAAAGCATAAGTGCTGGCTCTCTCTCCCTCTCACCCCAACCCTTCACCTTTCTCCCCCTGGTAACCATGACCAAACTCACCCCTCCTACCGCCACTTACCCTTGCAGTGGCAATAAACCCACCCTTTAAGAAGAGAACTGTTACCATCAAAAGAAAGTACTCCATAGAGCTGGACAAGAGATATCGTGGGAGTGGAGTGAAGATTTTAGAGTTTAATCGAGACAAGTCCTTCATAGCTTTGCATTGGAAACTTTGAAATGGCTTGTTGCTACTACACATGTCTTGCTCTTTGTTTCTTGTAGCCAGAAGTTCCTTAGGGTAGAGCGCTTTTCCAAAGCAACCATTTGGGTTGAAAAAAATTCAAACAAAAAGGGTACTCTTTGTCAAGGTCACCCTTCCTCATGACAATGGTTGTGTAAGCAAACTCCTCATACCTATGGGCGAAGAAAGAAAGAACGAGATGCTTTTTATAAGCTTATAGCAAACTACCCCTTCCCTTCCATAAAAGCTAGATCACCTATACCCAAAACCCTCCACCCATCAAGGGTTGCTTTTATGCCTTCTCGTAAACCCTCCCACCAACTAAAAAACCCCGTGCTTCCTTCATTAAATGGATCCACCTCTACAAAGCTCCCATTTGCACTTGTTGCCTCATTCAAAATAATCATGATTGCCAATGACCATGCTTTTGTGGACCCTTTCGATGCACAGTTGCTTGACACTTCCCTCTAGGACCAAGCAGTGATTGTTACGGGAAGAAATTTTCATGGCGAATGGTACAAGATCACTTGTTGTCTTCAATTGCTCTTCCACGTTTCCCGTCATTTAAATCCCTTCCGCGTGTGATGTGATCAATGTGTGAAAATCCCATCTCTTTGTTCCACTAGGGATTGACTAAAAATTGGAGGTTATAAATTAAAGTTCGAACAATAGTGTAGAAGCACAGTCGAGATGCCCTGTGTTTCCATCTTATGGAGGATGGATTAAAATACAAAAGCTCCTTTTAGATTGCTAGTACCCCGAAACATTGAAAGCCACTGGAGACTCTTGTGGAGGTTTCGTAGAAGCAGCTAAAAAGCCTACTGCTGGTTCCCAGTGGAAGCTAGTATAGAGAGCTGGTGGGGCTTGCGTCAAATATCAATTACAAAAAAATCTTTGTCAAACCTCTCATTGGGGGGGAGGTCACCTCATGATATTGTTACTTGGAAGGTAAGAGGCATTGGAGATTGGCAAAATAGGGCCCTCATTAAAACCTTTCTCCTTAAATTCAATCCAACTGCGGTCATACTATAGGAACTAAACTGGCGTATGTTGATTGACTTATCATAAAGTCATTATGGAGCGATAGGAATATTAGTTGGACTCATTTAGATGCTTATGTGGGGATCATCATCATGTGGAATGGTCCAACCATTGTCTCTTCTCACATCACCAAAGGTTTGTTCCTCTCTCCCTTCTCCTTACCTTGCTGATGGTTTTCAGTTTTGGATCACGAATGTATATGACCCACAGATATCAAGAGAGGCCACCTTTTTTGCAAGAACTATACAACCGATCTCGTTTATGCACGGAAAATTGGTTGATTGCTAGAGATTTTAATTTCACAAACTTGATTGCCCAACATCTGACCATTTCCTCCTTAACTCTCTATATTGGTAGCTGTAAATGGTGTCCTTCCCTTTTCCGATTTGAAACATGTGGTTACTACACCATTCTTTATTGCCTTTATCTGATTATTGGTGGAAGAACACCCCCTCGCGAGGCTAGCCTAGTCATGGCTTTATAATCAAGCTTAAAGATCTAAAAAAGAGTCTCAGTTCTAACTACAAAGAAGATTCAATTGTTGACTGAAATATCTATCCTAGATAACTTGGAGGAATCTGGGCCCATCTCTTTAGCACAACTTTCACAAGGAAAGACGATGAAGGCAAAGATTTTTATCTTTAGCAGCCCACGAGGAACAAAAATGGAAGCAAAAATATAAGAAAAAATGGATTGAAGACGAAGATACTAATTCCACCTTCTTCCACCATATTATGGCCACAAAGAAAAGAACACTATTATGGTAATCTTATCCACCTATGAAGAAGCCTTCTTAATGGGCTAGGATTTCCAGAAGAAGATGCCATTCGTGCTGAGACTGTCTCAGACTTCATTGGGTTCTATAGAGAACTTTATGGGACAAAAGATAATTTGACAACCTTCCCCATAGATATCGAGTGGAGTCCTATTGATAGACATATCAGCAAGTTTGGAAGATGAGTTTATAGAATTTTAAGTTTGGAATGTAGTTAAGCTCCTTGGCTCAAAAAAATCACATGGGTTTATATTTTAATTGTTTAAAAAATGTTGGATCAACCTTAAAGATGATATCATGAAATTTTTTCAAGATTTGTTCTTAAGAAGGGGATTATTAATGCCAGTTTAAATGAAATTTATATAGAGTTAATTCCAAAGAAACTTGATGCTTGATAGGTGGCCATTACTGATTACCGAACAACTTTTATTGAAATTAGACAAATTCTTGATGCATCAATTATGGATAATGATCTCATTGATAAATGACAAAGAAAGAAGTGAAATGGTGTGATCATTAAACTTGATACTTGCAAGGCCTTTGATAAGGTGGATTGAGCATTTCTTGAATGAATCTTCTCTGCTAAAGGTTTTGGATTAAAATGGAGAACATGGATTGGAGTGTATCTCCAAAGCAAACTTCTCAATACTGATAAATGGCTGCCCTTGTGTAAAATTCTTGCATCTCTCGGCCTTAGACAAGAGGATCCTTTATCCCCACTTCTTTTTATCATATAATGGTTAATCTTAGCCGTTTGCTCACCAAAGCTGAATATGGAGGTCATATCAGAGGCTTTTGGGTCGGCCAATACCACTTGAGTATCAATTACGTTCAGTTTGCGGATGACACAATCCTTTTTCAGAGTTTGAAGACGAGTCATTAGTTCATAATCTGCTCCTGGTGGTTAATACTTTTGATCAGGCTTTGGGTCACAGTGTCCATCTTCATAAATAAGAGATTATTTGTATCAACGTGGAACCCACAGTGATCAAGGTTATACCACAGTAATATGGGCGTAAGTTAGGTGATTGGCCATATTTGGGACTTCTTCTCAATGGTGCACCCAAGACTAGCGGTTTCTGAGCTCCACTTATAGGGAAAAAAAGTGAGTTAAGACTATCGGCATGGTGATCTACATGTACATCCAAAGGAGTAAGACTCACACTCCAGGGTTCGGTATCCAATCTTCCTACACTTGTTTCATTTACCTATTTAGGTGGGCTAGGAGATGGAAAGATTGTTCAGAGATTTCTTAAGGGGGTTTGAATGATAGTCGACAGCATCTTGTTAGATGGAGCAATATCCTCTATCTGATAGATCAAGGAGGCCTTGGACAACATTCCACGAGGGGCCAAAATAATGCTCTTTTGACAAAGCGAGTTTAGCGGTATAACCAGGACAAAAATGCTTTGTGGAGTAAGCCTTGTTAAAGGAAAATTTAGGTCATCGACTTATTCAAACTGTGGGCTATATGAGCCACTGAAGGGGCCCCTGGAGAGCTATTGGTAAGCAGCAAAATCTTATCACAAGCTGCATTTGTCATCAAGTTGGGGATGGTGCCAATATCTTTTCTGGACTGATTCTTGAGTAACTAGCTCCTTATTCGCTTCTCGTTACCCTCACCTGTATAGACTTTCTCACTGCAAAGTGGCCACGGTTAATGAAGTTTGGAACAATACCAACAGATTCTGGGACCTTAGACTTGGGAGAAACTTGAAAGATGAAGAGACATTAGAATGGGCAGACCTCAGCCCCGATCTTGACCCCAATGTCCTCACTTAAGTAGAGAATTCTTGGAGGTGGCTCCTTAATCCCAATGGACAATTCTCTATTAAATCTCTTTTTTTGTCAGACATGGGTGATGGCACTTGCCTCCTTGAGTCTTTGTCTAAAGCCACATGGAAGGTCAAATAAAATACCCAGAGAAAATCAAAATTTTCCTTTGGGAGCGATCACTGAGAGCCATCAATACCAAAGATGTTCTTCGGAGGCATATGCCATTCATGGCTTTACCCCCTGCGTGGTGCTCTCTTTGGCAAGCCGTTGATGAATCCCTGAGTCACATCTTCAAACACTGTCCATTTGCAAGTAGATTCTGGAATACTCTTGACTTAGTTTTTCTCACTTTGGTTTCTCCCAGAAATGTTAAGGATTTACTCATCTTAATTCTGTTAGGGCACTTGTTCAAGAATATCAAGGCTTTACAGTGGATGAACATTACTAGGGTTTTCTATTGGATTCTTTGGAAAGGATGAAACCGAATAGTTTTTCTGGGAAAAAGTGCAATTCCTTGAATTGTTCTTTAATCCGTTATCTACTATGCTATTTCCTGGTGTAAATGTTCAAATCTCTTTGTTTCTTACTCTTATGCTTCCCTTGTAGTTAATTGGGAGAGCTTTTTGAAATCTCATTTTTGTAAATTTCTTACATCAATGAAATTGTTTCTTGTATAAAAAAAATTATGTGCATGATAGAGCCTCATTGCTTAAAGTATTAGATATCTGTATTTTGCATAATTATGAGCAAGATTCCTCCAGAAAGTTCAGGTATCATAACCAGCTAGTATACATTGCTGCATTGCATATTTTATCCTTTTCAATTATGGCAACCACCTCCTTACTTCTTGTTTATCCTTTTCAATTAGTTAAATGTCATATTTTATCTTTTCCAATTATTGCATTGCTTCATAATTGTTCTATCCTCCCAACTTCTTTTTAATGACAATTTTTATAGTTGGTCGACTAGCTGCTGCCGACTTTAATTTTGTTATAAAGCAAGAATGGAAGTTTTATTGCAAGTAATTGGTCTCAATGGGAACCTACTTTTATCTTGTGTTGATGACAACCTTAATGGATGTGAATGGACAACAACACAATTAGTCACCTACTTCCTACTGCATTTATCCTGTCACATCTGCCTATTTGTTAAATGTCATTAATAATTTCTCTCTCAGGGGACAGGCATTGTGTACAACTGCTGCAGTCCTTGGAGGAAGGAGCTTGGCATCACAAATATCTGAGAAAATAGTACTCCACAATTCATTCACTCTTCTCATGCTAGTTGCTTACTGTTATCATTGTTGAGCAGAAAAATTAAATTTTCGTTTCTCCTTTTCAGGTTGCTCTCTCAGGTGGGCTTTTATTTATTGTTTTCGGAATCCAGTCCTTCCTCTCAACTGTTGAACCATAATTTTTACAAGCTCATTATGGTTAGTTATGATACTGGCTTCAGTTCTGGCATGCTTTTGGAATCTTATTTCTTTCTTAGTAGGGCTTATTCTTTCATTTTTAAGCTCAGAATGATAAGTAGTTCCCTTTCGTGATGGAATTGATTAACTAACATACTCATGTACTTCTATTTTCGTTCGCTTGAAAATAATTGAAAAATCAAGCCTTCATTGAAATATGAATGGATACAAAAGGGCCAAATAGAGGTTCGCAACATGATCCTACAAAAATGGTGGCCAAAGAGGAGCAAATAGGAACTAACCTAACAATAGTAGAAAGGGTTTCTATCTTACAGAGACTGAAATCAGGGAGTTCGACTTGGCTTGGGAACAAACCTCCTACCAAGATCTCATTCATGGAGATCATATTATTTCTCTTAATCCACATTCTCTATAGAACTGCAAAAAAATTAGCTCTCTAGAGAACAATTCCCTTTTCCTTAAGAGTAGGGTGAAGGAGAACCTTCTCCATCATAAAATTTCACCTGTTACTGGACAAACAAATTCCATAAACCTCCAATAGCAGTTTCAAATCTGATGAGCAAACTGACAACCCCAAAGCAATTGACCTGATCTTTCTACCGAGAATACACCATTGCGGCCCTAATAGGAAGGAAGTGTGTTCCGGAATCCAATCCATTGTGTTGATTCCCCAGTGCAACTTCTGGTAAACTGAGAACTCCAAAGAATTTTACATTCATGGAAACATTAACCTTCCATAGCAAGAAAAAATAAAGGGGAGGAAGAGGGGCAAGGACTACACTTAATGCTAGAAAAGAGAACCACTAGATGACTCTTACGGAGGATTAGGAGCCTAACAACGAACGCCCAGAAATGAGGCGTCTTTAGGTTTATTAAAACAGCAATGTCTTGACTCCCTACCAGACACAAAAGTTGACGGAAATGCGAACCTTCTGACTGAACAATGGCAGATACTTAGGATCCTTAAAAGCACAACCGACGATGTCACCCAATTCCATCAAAAATTTTAAATGTACTCTTTTTACCTTTTCATAAGTCATTCCAAAGGTTCAGCTCATTTTTTGGCACATTGTATCTCAAGTCATTGTTTTCGCTTGCAGGTATAGAAGGGTGCTTGGCCGAATTGTTGCCACACACCTGCCCTCCATATTGGCCATCGATGGACGAATTTAAGACCCATTTAAAGAGCCAATAACATGTTTTTACCAGATACTGTATCAGTGGTAGTAGCTTGCTGGACATTGGTTGCAGTAGTTCTTAGTTCGTATAGTGAAGATATTCGTAGAGCTGTTCTAGATGGTCTTAGGTCTTTGTAGCAACATATTAAGAGAATATATCAAATCCGATTAGAATAATTCAAAATAAATATATTTCTTTTTTTTTAACATAATATTTTGTTAATGTTGGTGTTCAATGCCCGTAGTTTACAGAAAACGCTATTTCTTTAAGTGGAATATTTGTTTTTGAGTTTTTGCCATTTAG

mRNA sequence

TATTCTTCATTCGCAAAGAGGAAGAAGCCAAAAAGGCCTTTCTCCAAAATCCCTCTTTTTCCCTTCGTCTGGTTCTGAACTTCCAAGGGGACTTGGTGAGTTACACAGCCACTGATCCGTTTCATCCCACTTTGGGGATTCGGAGCCTGTCGGAGAATCCATACTCTGACGCTCCTTTCTAATCTTCACTTCCTTCTTCTCCTCACTCGCCTCTTCACCTCCTTTGTTCTCCACCGATCGCGATGGCCACATCCATCATCCAGGGTTTTACGAAGTCGCTTGCGATGACTGTGCTCTCCGAGATCGGGGATAAAACATTCTTCGCTGCTGCGATCATGGCAATGCGGCATCCAAGGAGACTTGTCTTGTCTGGTTGTCTGTCGGCTTTGATTGTAATGACCATTCTTTCTGCTCTGGTTGGTTGGGCTGCACCAAATCTGATTTCACGTAAATGGACTCATCATGTAACAACGCTATTGTTCCTTGGTTTTGGACTGTGGTCTTTGTGGGATGCATTTAATGATGGAGGGGAGTCTGAAGAATTGGCTGAAGTTGAAGCTAGATTGGATGCTGATCTGAAGGCTAACAAAAAAGGTTCCAAAGATGGCAATAAGGTTGATGATGATGATGTGAAGAAACAGAATCGGTCATTTCTCTTGCAGTTCTTGTCACCAATATATTTAAAGGCATTTTCCATTACCTTTTTTGGCGAATGGGGTGACAAGAGTCAGTTAGCAACGATTGGCTTAGCTGCAGATGAAGACCCAGTTGGTGTTGTTCTTGGTGGAATTTTGGGACAGGCATTGTGTACAACTGCTGCAGTCCTTGGAGGAAGGAGCTTGGCATCACAAATATCTGAGAAAATAGTTGCTCTCTCAGGTGGGCTTTTATTTATTGTTTTCGGAATCCAGTCCTTCCTCTCAACTGTTGAACCATAATTTTTACAAGCTCATTATGGTATAGAAGGGTGCTTGGCCGAATTGTTGCCACACACCTGCCCTCCATATTGGCCATCGATGGACGAATTTAAGACCCATTTAAAGAGCCAATAACATGTTTTTACCAGATACTGTATCAGTGGTAGTAGCTTGCTGGACATTGGTTGCAGTAGTTCTTAGTTCGTATAGTGAAGATATTCGTAGAGCTGTTCTAGATGGTCTTAGGTCTTTGTAGCAACATATTAAGAGAATATATCAAATCCGATTAGAATAATTCAAAATAAATATATTTCTTTTTTTTTAACATAATATTTTGTTAATGTTGGTGTTCAATGCCCGTAGTTTACAGAAAACGCTATTTCTTTAAGTGGAATATTTGTTTTTGAGTTTTTGCCATTTAG

Coding sequence (CDS)

ATGGCCACATCCATCATCCAGGGTTTTACGAAGTCGCTTGCGATGACTGTGCTCTCCGAGATCGGGGATAAAACATTCTTCGCTGCTGCGATCATGGCAATGCGGCATCCAAGGAGACTTGTCTTGTCTGGTTGTCTGTCGGCTTTGATTGTAATGACCATTCTTTCTGCTCTGGTTGGTTGGGCTGCACCAAATCTGATTTCACGTAAATGGACTCATCATGTAACAACGCTATTGTTCCTTGGTTTTGGACTGTGGTCTTTGTGGGATGCATTTAATGATGGAGGGGAGTCTGAAGAATTGGCTGAAGTTGAAGCTAGATTGGATGCTGATCTGAAGGCTAACAAAAAAGGTTCCAAAGATGGCAATAAGGTTGATGATGATGATGTGAAGAAACAGAATCGGTCATTTCTCTTGCAGTTCTTGTCACCAATATATTTAAAGGCATTTTCCATTACCTTTTTTGGCGAATGGGGTGACAAGAGTCAGTTAGCAACGATTGGCTTAGCTGCAGATGAAGACCCAGTTGGTGTTGTTCTTGGTGGAATTTTGGGACAGGCATTGTGTACAACTGCTGCAGTCCTTGGAGGAAGGAGCTTGGCATCACAAATATCTGAGAAAATAGTTGCTCTCTCAGGTGGGCTTTTATTTATTGTTTTCGGAATCCAGTCCTTCCTCTCAACTGTTGAACCATAA

Protein sequence

MATSIIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVGWAAPNLISRKWTHHVTTLLFLGFGLWSLWDAFNDGGESEELAEVEARLDADLKANKKGSKDGNKVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPVGVVLGGILGQALCTTAAVLGGRSLASQISEKIVALSGGLLFIVFGIQSFLSTVEP

Homology

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BLAST of Cp4.1LG01g17950 vs. ExPASy Swiss-Prot
Match: Q9C6M1 (GDT1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=At1g25520 PE=2 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 4.5e-97
Identity = 182/229 (79.48%), Postives = 209/229 (91.27%), Query Frame = 0


Query: 3   TSIIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVGWA 62
           +S++QGFTKSLAMT +SEIGDKTFFAAAI+AMR+PRRLVL+GCLSALIVMTILSA +GWA
Sbjct: 2   SSVLQGFTKSLAMTFVSEIGDKTFFAAAILAMRYPRRLVLAGCLSALIVMTILSATLGWA 61

Query: 63  APNLISRKWTHHVTTLLFLGFGLWSLWDAFND-GGESEELAEVEARLDADLKANKKGSKD 122
           APNLISRKWTHH+TTLLF GFGLWSLWD F + GG SEELAEVEA LDADLKAN K  KD
Sbjct: 62  APNLISRKWTHHITTLLFFGFGLWSLWDGFKEGGGGSEELAEVEAELDADLKANGKSPKD 121

Query: 123 GNKVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPVGVVLG 182
            +K +D++ KKQNR+FL QF SPI+LKAFSI FFGEWGDKSQLATIGLAADE+P GVVLG
Sbjct: 122 SSKREDEN-KKQNRAFLTQFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPFGVVLG 181

Query: 183 GILGQALCTTAAVLGGRSLASQISEKIVALSGGLLFIVFGIQSFLSTVE 231
           G++ Q LCTTAAV+GG+SLASQISE+IVALSGG+LFI+FGIQS+L++VE
Sbjct: 182 GVVAQFLCTTAAVIGGKSLASQISERIVALSGGMLFIIFGIQSYLTSVE 229

[Close]

BLAST of Cp4.1LG01g17950 vs. ExPASy Swiss-Prot
Match: Q9SX28 (GDT1-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=At1g68650 PE=1 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 1.8e-93
Identity = 177/227 (77.97%), Postives = 198/227 (87.22%), Query Frame = 0


Query: 4   SIIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVGWAA 63
           S++QGFTKSLAMT LSEIGDKTFFAAAI+AMR+PRRLVL+GCLSALIVMTILSA +GWAA
Sbjct: 3   SLLQGFTKSLAMTFLSEIGDKTFFAAAILAMRYPRRLVLAGCLSALIVMTILSATLGWAA 62

Query: 64  PNLISRKWTHHVTTLLFLGFGLWSLWDAFNDGGESEELAEVEARLDADLKANKKGSKDGN 123
           PNLISRKWTHH+TT LF GFGLWSLWD F +GG SEELAEVEA LD+DLK     SK  N
Sbjct: 63  PNLISRKWTHHITTFLFFGFGLWSLWDGFKEGGGSEELAEVEAELDSDLKKTNDQSK--N 122

Query: 124 KVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPVGVVLGGI 183
              +D+ KKQ R FL  F SPI+LKAFSI FFGEWGDKSQLATIGLAADE+P+GVVLGGI
Sbjct: 123 SKIEDEQKKQKRPFLTAFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPLGVVLGGI 182

Query: 184 LGQALCTTAAVLGGRSLASQISEKIVALSGGLLFIVFGIQSFLSTVE 231
           + Q LCTTAAVLGG+SLASQISE+IVALSGG+LFI+FGIQS L+ V+
Sbjct: 183 VAQTLCTTAAVLGGKSLASQISERIVALSGGMLFIIFGIQSLLTPVD 227

[Close]

BLAST of Cp4.1LG01g17950 vs. ExPASy Swiss-Prot
Match: B9G125 (GDT1-like protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0433100 PE=2 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 1.7e-88
Identity = 168/230 (73.04%), Postives = 198/230 (86.09%), Query Frame = 0


Query: 1   MATSIIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVG 60
           MA S++ GFTKSLAMTVLSEIGDKTFFAAAI+AMR+PR+LVL+GCL++L VMT LS  +G
Sbjct: 1   MAPSLLGGFTKSLAMTVLSEIGDKTFFAAAILAMRYPRKLVLAGCLTSLTVMTALSVSLG 60

Query: 61  WAAPNLISRKWTHHVTTLLFLGFGLWSLWDAFNDGGESEELAEVEARLDADLKANKKGSK 120
           W APNLISRKWTHHVTTLLF  FG+ SLW+ F + G+SEELAEVEA LDA+ K+NK  SK
Sbjct: 61  WVAPNLISRKWTHHVTTLLFFVFGILSLWEGFKEDGDSEELAEVEAELDANFKSNKAESK 120

Query: 121 DGNKVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPVGVVL 180
             +K +DD  KKQ R F+LQF SPI++KAFSITFFGEWGDKSQ+ATIGLAADE+P GVVL
Sbjct: 121 SKSKANDDK-KKQQRPFVLQFFSPIFIKAFSITFFGEWGDKSQIATIGLAADENPFGVVL 180

Query: 181 GGILGQALCTTAAVLGGRSLASQISEKIVALSGGLLFIVFGIQSFLSTVE 231
           GG+L QALCTTAAV+GG+SLASQISEK+V LS G+LF++FGI S+LS  E
Sbjct: 181 GGVLAQALCTTAAVMGGKSLASQISEKMVGLSSGVLFLLFGIMSYLSGPE 229

[Close]

BLAST of Cp4.1LG01g17950 vs. ExPASy Swiss-Prot
Match: A2ZE50 (GDT1-like protein 3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_36063 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 3.7e-43
Identity = 99/217 (45.62%), Postives = 139/217 (64.06%), Query Frame = 0


Query: 12  SLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVGWAAPNLISRKW 71
           SL+M ++SEIGD+TF  AA+MAMRHP+ +VLSG LSAL VMT+LS  +G   PNLISRK 
Sbjct: 75  SLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALYVMTVLSTGLGRIVPNLISRKH 134

Query: 72  THHVTTLLFLGFG---LWSLWDAFNDGGESEELAEVEARLDADLKANKKGSKDGNKVDDD 131
           T+   T+L+L FG   L+  W +   G + +E+ EVE                  K++  
Sbjct: 135 TNSAATVLYLFFGLRLLYIAWKSDPKGSQKKEMEEVE-----------------EKLESG 194

Query: 132 DVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPVGVVLGGILGQAL 191
             K   R F  +F +PI+L+AF +TF  EWGD+SQ+ATI LA  ++ +GV +G  LG  +
Sbjct: 195 QGKSTLRRFFGRFCTPIFLEAFILTFLAEWGDRSQIATIALATHKNAIGVAVGASLGHTV 254

Query: 192 CTTAAVLGGRSLASQISEKIVALSGGLLFIVFGIQSF 226
           CT+ AV+GG  LAS+IS++ VA  GG+LF+ F + S+
Sbjct: 255 CTSLAVIGGSMLASKISQRTVATIGGVLFLGFSVSSY 274

[Close]

BLAST of Cp4.1LG01g17950 vs. ExPASy Swiss-Prot
Match: Q2R4J1 (GDT1-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0472500 PE=2 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 3.7e-43
Identity = 99/217 (45.62%), Postives = 139/217 (64.06%), Query Frame = 0


Query: 12  SLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVGWAAPNLISRKW 71
           SL+M ++SEIGD+TF  AA+MAMRHP+ +VLSG LSAL VMT+LS  +G   PNLISRK 
Sbjct: 75  SLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALYVMTVLSTGLGRIVPNLISRKH 134

Query: 72  THHVTTLLFLGFG---LWSLWDAFNDGGESEELAEVEARLDADLKANKKGSKDGNKVDDD 131
           T+   T+L+L FG   L+  W +   G + +E+ EVE                  K++  
Sbjct: 135 TNSAATVLYLFFGLRLLYIAWKSDPKGSQKKEMEEVE-----------------EKLESG 194

Query: 132 DVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPVGVVLGGILGQAL 191
             K   R F  +F +PI+L+AF +TF  EWGD+SQ+ATI LA  ++ +GV +G  LG  +
Sbjct: 195 QGKSTLRRFFGRFCTPIFLEAFILTFLAEWGDRSQIATIALATHKNAIGVAVGASLGHTV 254

Query: 192 CTTAAVLGGRSLASQISEKIVALSGGLLFIVFGIQSF 226
           CT+ AV+GG  LAS+IS++ VA  GG+LF+ F + S+
Sbjct: 255 CTSLAVIGGSMLASKISQRTVATIGGVLFLGFSVSSY 274

[Close]

BLAST of Cp4.1LG01g17950 vs. NCBI nr
Match: XP_023538944.1 (GDT1-like protein 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 439 bits (1130), Expect = 3.91e-155
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 1   MATSIIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVG 60
           MATSIIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVG
Sbjct: 1   MATSIIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVG 60

Query: 61  WAAPNLISRKWTHHVTTLLFLGFGLWSLWDAFNDGGESEELAEVEARLDADLKANKKGSK 120
           WAAPNLISRKWTHHVTTLLFLGFGLWSLWDAFNDGGESEELAEVEARLDADLKANKKGSK
Sbjct: 61  WAAPNLISRKWTHHVTTLLFLGFGLWSLWDAFNDGGESEELAEVEARLDADLKANKKGSK 120

Query: 121 DGNKVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPVGVVL 180
           DGNKVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPVGVVL
Sbjct: 121 DGNKVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPVGVVL 180

Query: 181 GGILGQALCTTAAVLGGRSLASQISEKIVALSGGLLFIVFGIQSFLSTVEP 231
           GGILGQALCTTAAVLGGRSLASQISEKIVALSGGLLFIVFGIQSFLSTVEP
Sbjct: 181 GGILGQALCTTAAVLGGRSLASQISEKIVALSGGLLFIVFGIQSFLSTVEP 231

[Close]

BLAST of Cp4.1LG01g17950 vs. NCBI nr
Match: XP_022971779.1 (GDT1-like protein 4 [Cucurbita maxima])

HSP 1 Score: 437 bits (1123), Expect = 4.56e-154
Identity = 229/231 (99.13%), Postives = 230/231 (99.57%), Query Frame = 0


Query: 1   MATSIIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVG 60
           MATSIIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVG
Sbjct: 1   MATSIIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVG 60

Query: 61  WAAPNLISRKWTHHVTTLLFLGFGLWSLWDAFNDGGESEELAEVEARLDADLKANKKGSK 120
           WAAPNLISRKWTHHVTTLLFLGFGLWSLWDAFNDGGESEELAEVEARLD DLKANKKGSK
Sbjct: 61  WAAPNLISRKWTHHVTTLLFLGFGLWSLWDAFNDGGESEELAEVEARLDTDLKANKKGSK 120

Query: 121 DGNKVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPVGVVL 180
           DGNKVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDP+GVVL
Sbjct: 121 DGNKVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPLGVVL 180

Query: 181 GGILGQALCTTAAVLGGRSLASQISEKIVALSGGLLFIVFGIQSFLSTVEP 231
           GGILGQALCTTAAVLGGRSLASQISEKIVALSGGLLFIVFGIQSFLSTVEP
Sbjct: 181 GGILGQALCTTAAVLGGRSLASQISEKIVALSGGLLFIVFGIQSFLSTVEP 231

[Close]

BLAST of Cp4.1LG01g17950 vs. NCBI nr
Match: XP_022964603.1 (GDT1-like protein 4 [Cucurbita moschata])

HSP 1 Score: 436 bits (1120), Expect = 1.31e-153
Identity = 227/231 (98.27%), Postives = 230/231 (99.57%), Query Frame = 0


Query: 1   MATSIIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVG 60
           MATSIIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILS LVG
Sbjct: 1   MATSIIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSVLVG 60

Query: 61  WAAPNLISRKWTHHVTTLLFLGFGLWSLWDAFNDGGESEELAEVEARLDADLKANKKGSK 120
           WAAPNLISRKWTHHVTTLLFLGFGLWSLWDAFNDGGESEELAEVEARLDADLKAN+KGSK
Sbjct: 61  WAAPNLISRKWTHHVTTLLFLGFGLWSLWDAFNDGGESEELAEVEARLDADLKANRKGSK 120

Query: 121 DGNKVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPVGVVL 180
           DGNKVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDP+GVVL
Sbjct: 121 DGNKVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPIGVVL 180

Query: 181 GGILGQALCTTAAVLGGRSLASQISEKIVALSGGLLFIVFGIQSFLSTVEP 231
           GGILGQALCTTAAVLGGRSLASQISEKIVALSGG+LFIVFGIQSFLSTVEP
Sbjct: 181 GGILGQALCTTAAVLGGRSLASQISEKIVALSGGILFIVFGIQSFLSTVEP 231

[Close]

BLAST of Cp4.1LG01g17950 vs. NCBI nr
Match: XP_038886276.1 (GDT1-like protein 4 [Benincasa hispida])

HSP 1 Score: 420 bits (1079), Expect = 2.24e-147
Identity = 222/231 (96.10%), Postives = 226/231 (97.84%), Query Frame = 0


Query: 1   MATSIIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVG 60
           MATS+IQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVG
Sbjct: 1   MATSVIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVG 60

Query: 61  WAAPNLISRKWTHHVTTLLFLGFGLWSLWDAFNDGGESEELAEVEARLDADLKANKKGSK 120
           WAAPNLISRKWTHHVTTLLFLGFGLWSLWDAFND GESEELAEVEA+LDADLKA KKGSK
Sbjct: 61  WAAPNLISRKWTHHVTTLLFLGFGLWSLWDAFNDEGESEELAEVEAKLDADLKAKKKGSK 120

Query: 121 DGNKVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPVGVVL 180
           DGNKVDDD VKK NRS LLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDP+GVVL
Sbjct: 121 DGNKVDDD-VKKHNRSILLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPLGVVL 180

Query: 181 GGILGQALCTTAAVLGGRSLASQISEKIVALSGGLLFIVFGIQSFLSTVEP 231
           GGILGQALCTTAAVLGGRSLASQISEKIVALSGG+LFIVFGIQSFLSTVEP
Sbjct: 181 GGILGQALCTTAAVLGGRSLASQISEKIVALSGGILFIVFGIQSFLSTVEP 230

[Close]

BLAST of Cp4.1LG01g17950 vs. NCBI nr
Match: XP_022139629.1 (GDT1-like protein 4 [Momordica charantia])

HSP 1 Score: 417 bits (1073), Expect = 1.84e-146
Identity = 216/231 (93.51%), Postives = 228/231 (98.70%), Query Frame = 0


Query: 1   MATSIIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVG 60
           MATS++QGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRR+VL+GCLSALIVMTILSALVG
Sbjct: 1   MATSVVQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRIVLAGCLSALIVMTILSALVG 60

Query: 61  WAAPNLISRKWTHHVTTLLFLGFGLWSLWDAFNDGGESEELAEVEARLDADLKANKKGSK 120
           WAAPNLISRKWTHH+TTLLFLGFGLWSLWDAFNDGGESEELAEVEA+LDADLKANKKGSK
Sbjct: 61  WAAPNLISRKWTHHITTLLFLGFGLWSLWDAFNDGGESEELAEVEAKLDADLKANKKGSK 120

Query: 121 DGNKVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPVGVVL 180
           DGNKVDDD +KK NRS LLQFLSPI+LKAFSITFFGEWGDKSQLATIGLAADEDP+GVVL
Sbjct: 121 DGNKVDDD-MKKHNRSILLQFLSPIFLKAFSITFFGEWGDKSQLATIGLAADEDPLGVVL 180

Query: 181 GGILGQALCTTAAVLGGRSLASQISEKIVALSGGLLFIVFGIQSFLSTVEP 231
           GGILGQALCTTAAV+GGRSLASQISEKIVALSGG+LFIVFGIQSFLSTV+P
Sbjct: 181 GGILGQALCTTAAVIGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTVQP 230

[Close]

BLAST of Cp4.1LG01g17950 vs. ExPASy TrEMBL
Match: A0A6J1I9I8 (GDT1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111470457 PE=3 SV=1)

HSP 1 Score: 437 bits (1123), Expect = 2.21e-154
Identity = 229/231 (99.13%), Postives = 230/231 (99.57%), Query Frame = 0


Query: 1   MATSIIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVG 60
           MATSIIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVG
Sbjct: 1   MATSIIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVG 60

Query: 61  WAAPNLISRKWTHHVTTLLFLGFGLWSLWDAFNDGGESEELAEVEARLDADLKANKKGSK 120
           WAAPNLISRKWTHHVTTLLFLGFGLWSLWDAFNDGGESEELAEVEARLD DLKANKKGSK
Sbjct: 61  WAAPNLISRKWTHHVTTLLFLGFGLWSLWDAFNDGGESEELAEVEARLDTDLKANKKGSK 120

Query: 121 DGNKVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPVGVVL 180
           DGNKVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDP+GVVL
Sbjct: 121 DGNKVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPLGVVL 180

Query: 181 GGILGQALCTTAAVLGGRSLASQISEKIVALSGGLLFIVFGIQSFLSTVEP 231
           GGILGQALCTTAAVLGGRSLASQISEKIVALSGGLLFIVFGIQSFLSTVEP
Sbjct: 181 GGILGQALCTTAAVLGGRSLASQISEKIVALSGGLLFIVFGIQSFLSTVEP 231

[Close]

BLAST of Cp4.1LG01g17950 vs. ExPASy TrEMBL
Match: A0A6J1HLC7 (GDT1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111464564 PE=3 SV=1)

HSP 1 Score: 436 bits (1120), Expect = 6.33e-154
Identity = 227/231 (98.27%), Postives = 230/231 (99.57%), Query Frame = 0


Query: 1   MATSIIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVG 60
           MATSIIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILS LVG
Sbjct: 1   MATSIIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSVLVG 60

Query: 61  WAAPNLISRKWTHHVTTLLFLGFGLWSLWDAFNDGGESEELAEVEARLDADLKANKKGSK 120
           WAAPNLISRKWTHHVTTLLFLGFGLWSLWDAFNDGGESEELAEVEARLDADLKAN+KGSK
Sbjct: 61  WAAPNLISRKWTHHVTTLLFLGFGLWSLWDAFNDGGESEELAEVEARLDADLKANRKGSK 120

Query: 121 DGNKVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPVGVVL 180
           DGNKVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDP+GVVL
Sbjct: 121 DGNKVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPIGVVL 180

Query: 181 GGILGQALCTTAAVLGGRSLASQISEKIVALSGGLLFIVFGIQSFLSTVEP 231
           GGILGQALCTTAAVLGGRSLASQISEKIVALSGG+LFIVFGIQSFLSTVEP
Sbjct: 181 GGILGQALCTTAAVLGGRSLASQISEKIVALSGGILFIVFGIQSFLSTVEP 231

[Close]

BLAST of Cp4.1LG01g17950 vs. ExPASy TrEMBL
Match: A0A6J1CDK4 (GDT1 family protein OS=Momordica charantia OX=3673 GN=LOC111010484 PE=3 SV=1)

HSP 1 Score: 417 bits (1073), Expect = 8.91e-147
Identity = 216/231 (93.51%), Postives = 228/231 (98.70%), Query Frame = 0


Query: 1   MATSIIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVG 60
           MATS++QGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRR+VL+GCLSALIVMTILSALVG
Sbjct: 1   MATSVVQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRIVLAGCLSALIVMTILSALVG 60

Query: 61  WAAPNLISRKWTHHVTTLLFLGFGLWSLWDAFNDGGESEELAEVEARLDADLKANKKGSK 120
           WAAPNLISRKWTHH+TTLLFLGFGLWSLWDAFNDGGESEELAEVEA+LDADLKANKKGSK
Sbjct: 61  WAAPNLISRKWTHHITTLLFLGFGLWSLWDAFNDGGESEELAEVEAKLDADLKANKKGSK 120

Query: 121 DGNKVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPVGVVL 180
           DGNKVDDD +KK NRS LLQFLSPI+LKAFSITFFGEWGDKSQLATIGLAADEDP+GVVL
Sbjct: 121 DGNKVDDD-MKKHNRSILLQFLSPIFLKAFSITFFGEWGDKSQLATIGLAADEDPLGVVL 180

Query: 181 GGILGQALCTTAAVLGGRSLASQISEKIVALSGGLLFIVFGIQSFLSTVEP 231
           GGILGQALCTTAAV+GGRSLASQISEKIVALSGG+LFIVFGIQSFLSTV+P
Sbjct: 181 GGILGQALCTTAAVIGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTVQP 230

[Close]

BLAST of Cp4.1LG01g17950 vs. ExPASy TrEMBL
Match: A0A6J1FDG2 (GDT1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111444751 PE=3 SV=1)

HSP 1 Score: 415 bits (1066), Expect = 1.04e-145
Identity = 220/231 (95.24%), Postives = 226/231 (97.84%), Query Frame = 0


Query: 1   MATSIIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVG 60
           MATS+IQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVG
Sbjct: 1   MATSVIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVG 60

Query: 61  WAAPNLISRKWTHHVTTLLFLGFGLWSLWDAFNDGGESEELAEVEARLDADLKANKKGSK 120
           WAAPNLISRK THHVTTLLFLGFGLWSLWD FN+GGESEELAEVEA+LDADLKANKKGSK
Sbjct: 61  WAAPNLISRKLTHHVTTLLFLGFGLWSLWDVFNNGGESEELAEVEAKLDADLKANKKGSK 120

Query: 121 DGNKVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPVGVVL 180
           DGNKVDD+ VKK NRS LLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDP+GVVL
Sbjct: 121 DGNKVDDE-VKKHNRSILLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPLGVVL 180

Query: 181 GGILGQALCTTAAVLGGRSLASQISEKIVALSGGLLFIVFGIQSFLSTVEP 231
           GGILGQALCTTAAVLGGRSLASQISEKIVALSGG+LFIVFGIQSFLSTVEP
Sbjct: 181 GGILGQALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTVEP 230

[Close]

BLAST of Cp4.1LG01g17950 vs. ExPASy TrEMBL
Match: A0A6J1JY15 (GDT1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111489854 PE=3 SV=1)

HSP 1 Score: 414 bits (1063), Expect = 2.98e-145
Identity = 219/231 (94.81%), Postives = 226/231 (97.84%), Query Frame = 0


Query: 1   MATSIIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVG 60
           MATS+IQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVG
Sbjct: 1   MATSVIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVG 60

Query: 61  WAAPNLISRKWTHHVTTLLFLGFGLWSLWDAFNDGGESEELAEVEARLDADLKANKKGSK 120
           WAAPNLISRK THHVTTLLFLGFGLWSLWD FN+GGESEELAEVEA+LDADLK+NKKGSK
Sbjct: 61  WAAPNLISRKLTHHVTTLLFLGFGLWSLWDVFNNGGESEELAEVEAKLDADLKSNKKGSK 120

Query: 121 DGNKVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPVGVVL 180
           DGNKVDD+ VKK NRS LLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDP+GVVL
Sbjct: 121 DGNKVDDE-VKKHNRSILLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPLGVVL 180

Query: 181 GGILGQALCTTAAVLGGRSLASQISEKIVALSGGLLFIVFGIQSFLSTVEP 231
           GGILGQALCTTAAVLGGRSLASQISEKIVALSGG+LFIVFGIQSFLSTVEP
Sbjct: 181 GGILGQALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTVEP 230

[Close]

BLAST of Cp4.1LG01g17950 vs. TAIR 10
Match: AT1G25520.1 (Uncharacterized protein family (UPF0016) )

HSP 1 Score: 355.5 bits (911), Expect = 3.2e-98
Identity = 182/229 (79.48%), Postives = 209/229 (91.27%), Query Frame = 0


Query: 3   TSIIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVGWA 62
           +S++QGFTKSLAMT +SEIGDKTFFAAAI+AMR+PRRLVL+GCLSALIVMTILSA +GWA
Sbjct: 2   SSVLQGFTKSLAMTFVSEIGDKTFFAAAILAMRYPRRLVLAGCLSALIVMTILSATLGWA 61

Query: 63  APNLISRKWTHHVTTLLFLGFGLWSLWDAFND-GGESEELAEVEARLDADLKANKKGSKD 122
           APNLISRKWTHH+TTLLF GFGLWSLWD F + GG SEELAEVEA LDADLKAN K  KD
Sbjct: 62  APNLISRKWTHHITTLLFFGFGLWSLWDGFKEGGGGSEELAEVEAELDADLKANGKSPKD 121

Query: 123 GNKVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPVGVVLG 182
            +K +D++ KKQNR+FL QF SPI+LKAFSI FFGEWGDKSQLATIGLAADE+P GVVLG
Sbjct: 122 SSKREDEN-KKQNRAFLTQFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPFGVVLG 181

Query: 183 GILGQALCTTAAVLGGRSLASQISEKIVALSGGLLFIVFGIQSFLSTVE 231
           G++ Q LCTTAAV+GG+SLASQISE+IVALSGG+LFI+FGIQS+L++VE
Sbjct: 182 GVVAQFLCTTAAVIGGKSLASQISERIVALSGGMLFIIFGIQSYLTSVE 229

[Close]

BLAST of Cp4.1LG01g17950 vs. TAIR 10
Match: AT1G68650.1 (Uncharacterized protein family (UPF0016) )

HSP 1 Score: 343.6 bits (880), Expect = 1.2e-94
Identity = 177/227 (77.97%), Postives = 198/227 (87.22%), Query Frame = 0


Query: 4   SIIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVGWAA 63
           S++QGFTKSLAMT LSEIGDKTFFAAAI+AMR+PRRLVL+GCLSALIVMTILSA +GWAA
Sbjct: 3   SLLQGFTKSLAMTFLSEIGDKTFFAAAILAMRYPRRLVLAGCLSALIVMTILSATLGWAA 62

Query: 64  PNLISRKWTHHVTTLLFLGFGLWSLWDAFNDGGESEELAEVEARLDADLKANKKGSKDGN 123
           PNLISRKWTHH+TT LF GFGLWSLWD F +GG SEELAEVEA LD+DLK     SK  N
Sbjct: 63  PNLISRKWTHHITTFLFFGFGLWSLWDGFKEGGGSEELAEVEAELDSDLKKTNDQSK--N 122

Query: 124 KVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPVGVVLGGI 183
              +D+ KKQ R FL  F SPI+LKAFSI FFGEWGDKSQLATIGLAADE+P+GVVLGGI
Sbjct: 123 SKIEDEQKKQKRPFLTAFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPLGVVLGGI 182

Query: 184 LGQALCTTAAVLGGRSLASQISEKIVALSGGLLFIVFGIQSFLSTVE 231
           + Q LCTTAAVLGG+SLASQISE+IVALSGG+LFI+FGIQS L+ V+
Sbjct: 183 VAQTLCTTAAVLGGKSLASQISERIVALSGGMLFIIFGIQSLLTPVD 227

[Close]

BLAST of Cp4.1LG01g17950 vs. TAIR 10
Match: AT5G36290.1 (Uncharacterized protein family (UPF0016) )

HSP 1 Score: 165.6 bits (418), Expect = 4.6e-41
Identity = 97/226 (42.92%), Postives = 138/226 (61.06%), Query Frame = 0


Query: 2   ATSIIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVGW 61
           A S+      S +M +++EIGD+TF  AA+MAMRHP+  VLSG LSAL VMTILS  +G 
Sbjct: 78  APSVFDALFSSFSMILVTEIGDETFIIAALMAMRHPKATVLSGALSALFVMTILSTGLGR 137

Query: 62  AAPNLISRKWTHHVTTLLFLGFGLWSLWDAFNDGGESEELAEVEARLDADLKANKKGSKD 121
             PNLISRK T+   T+L+  FGL  L+ A+                  D K+N+K   +
Sbjct: 138 IVPNLISRKHTNSAATVLYAFFGLRLLYIAWR---------------STDSKSNQKKEME 197

Query: 122 --GNKVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPVGVV 181
               K++    K   R    +F +PI+L++F +TF  EWGD+SQ+ATI LA  ++ +GV 
Sbjct: 198 EVEEKLESGQGKTPFRRLFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAIGVA 257

Query: 182 LGGILGQALCTTAAVLGGRSLASQISEKIVALSGGLLFIVFGIQSF 226
           +G  +G  +CT+ AV+GG  LAS+IS++ VA  GGLLF+ F + S+
Sbjct: 258 IGASIGHTVCTSLAVVGGSMLASRISQRTVATVGGLLFLGFSVSSY 288

[Close]

BLAST of Cp4.1LG01g17950 vs. TAIR 10
Match: AT5G36290.2 (Uncharacterized protein family (UPF0016) )

HSP 1 Score: 165.6 bits (418), Expect = 4.6e-41
Identity = 97/226 (42.92%), Postives = 138/226 (61.06%), Query Frame = 0


Query: 2   ATSIIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVGW 61
           A S+      S +M +++EIGD+TF  AA+MAMRHP+  VLSG LSAL VMTILS  +G 
Sbjct: 78  APSVFDALFSSFSMILVTEIGDETFIIAALMAMRHPKATVLSGALSALFVMTILSTGLGR 137

Query: 62  AAPNLISRKWTHHVTTLLFLGFGLWSLWDAFNDGGESEELAEVEARLDADLKANKKGSKD 121
             PNLISRK T+   T+L+  FGL  L+ A+                  D K+N+K   +
Sbjct: 138 IVPNLISRKHTNSAATVLYAFFGLRLLYIAWR---------------STDSKSNQKKEME 197

Query: 122 --GNKVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPVGVV 181
               K++    K   R    +F +PI+L++F +TF  EWGD+SQ+ATI LA  ++ +GV 
Sbjct: 198 EVEEKLESGQGKTPFRRLFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAIGVA 257

Query: 182 LGGILGQALCTTAAVLGGRSLASQISEKIVALSGGLLFIVFGIQSF 226
           +G  +G  +CT+ AV+GG  LAS+IS++ VA  GGLLF+ F + S+
Sbjct: 258 IGASIGHTVCTSLAVVGGSMLASRISQRTVATVGGLLFLGFSVSSY 288

[Close]

BLAST of Cp4.1LG01g17950 vs. TAIR 10
Match: AT4G13590.1 (Uncharacterized protein family (UPF0016) )

HSP 1 Score: 131.3 bits (329), Expect = 9.7e-31
Identity = 85/223 (38.12%), Postives = 128/223 (57.40%), Query Frame = 0


Query: 8   GFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVGWAAPNLI 67
           GFT + ++  +SEIGDKTFF AA++AM++ + LVL G + AL +MTILS ++G    ++ 
Sbjct: 145 GFTAAFSLIFVSEIGDKTFFIAALLAMQYEKTLVLLGSMGALSLMTILSVVIGKIFQSVP 204

Query: 68  SRKWT-----HHVTTLLFLGFGLWSLWDAFNDGGESEELAEVEARLDADLKANKKGSKDG 127
           ++  T      +    L + FGL S+ DA+       +L  VEA+        + G + G
Sbjct: 205 AQFQTTLPIGEYAAIALLMFFGLKSIKDAW-------DLPPVEAK-----NGEETGIELG 264

Query: 128 NKVDDDDVKKQNRSFLLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPVGVVLGG 187
              + +++ K+  S  L     I  K+FS+ FF EWGD+S LAT+ L A + P+GV  G 
Sbjct: 265 EYSEAEELVKEKASKKLTNPLEILWKSFSLVFFAEWGDRSMLATVALGAAQSPLGVASGA 324

Query: 188 ILGQALCTTAAVLGGRSLASQISEKIVALSGGLLFIVFGIQSF 226
           I G  + T  A++GG  LA+ ISEK+V   GG LF+VF   +F
Sbjct: 325 IAGHLVATVLAIMGGAFLANYISEKLVGYVGGALFLVFAAATF 355

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g17950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C6M1	4.5e-97	79.48	GDT1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=At1g25520 PE=2 SV=1	[more]
Q9SX28	1.8e-93	77.97	GDT1-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=At1g68650 PE=1 SV=1	[more]
B9G125	1.7e-88	73.04	GDT1-like protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0433100 PE=...	[more]
A2ZE50	3.7e-43	45.62	GDT1-like protein 3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_36063 PE=3 SV=...	[more]
Q2R4J1	3.7e-43	45.62	GDT1-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0472500 PE=...	[more]

BLAST of Cp4.1LG01g17950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538944.1	3.91e-155	100.00	GDT1-like protein 4 [Cucurbita pepo subsp. pepo]	[more]
XP_022971779.1	4.56e-154	99.13	GDT1-like protein 4 [Cucurbita maxima]	[more]
XP_022964603.1	1.31e-153	98.27	GDT1-like protein 4 [Cucurbita moschata]	[more]
XP_038886276.1	2.24e-147	96.10	GDT1-like protein 4 [Benincasa hispida]	[more]
XP_022139629.1	1.84e-146	93.51	GDT1-like protein 4 [Momordica charantia]	[more]

BLAST of Cp4.1LG01g17950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I9I8	2.21e-154	99.13	GDT1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111470457 PE=3 SV=1	[more]
A0A6J1HLC7	6.33e-154	98.27	GDT1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111464564 PE=3 SV=1	[more]
A0A6J1CDK4	8.91e-147	93.51	GDT1 family protein OS=Momordica charantia OX=3673 GN=LOC111010484 PE=3 SV=1	[more]
A0A6J1FDG2	1.04e-145	95.24	GDT1 family protein OS=Cucurbita moschata OX=3662 GN=LOC111444751 PE=3 SV=1	[more]
A0A6J1JY15	2.98e-145	94.81	GDT1 family protein OS=Cucurbita maxima OX=3661 GN=LOC111489854 PE=3 SV=1	[more]

BLAST of Cp4.1LG01g17950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G25520.1	3.2e-98	79.48	Uncharacterized protein family (UPF0016)	[more]
AT1G68650.1	1.2e-94	77.97	Uncharacterized protein family (UPF0016)	[more]
AT5G36290.1	4.6e-41	42.92	Uncharacterized protein family (UPF0016)	[more]
AT5G36290.2	4.6e-41	42.92	Uncharacterized protein family (UPF0016)	[more]
AT4G13590.1	9.7e-31	38.12	Uncharacterized protein family (UPF0016)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001727	Gdt1 family	PFAM	PF01169	UPF0016	coord: 148..221 e-value: 3.3E-21 score: 75.4 coord: 11..84 e-value: 3.0E-20 score: 72.3
IPR001727	Gdt1 family	PANTHER	PTHR12608	TRANSMEMBRANE PROTEIN HTP-1 RELATED	coord: 3..229
None	No IPR available	PANTHER	PTHR12608:SF13	GDT1 FAMILY PROTEIN	coord: 3..229

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g17950.1	Cp4.1LG01g17950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070588	calcium ion transmembrane transport
biological_process	GO:0032468	Golgi calcium ion homeostasis
biological_process	GO:0032472	Golgi calcium ion transport
biological_process	GO:0071421	manganese ion transmembrane transport
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015085	calcium ion transmembrane transporter activity
molecular_function	GO:0005384	manganese ion transmembrane transporter activity