Cp4.1LG01g17840 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g17840
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	zinc finger protein JAGGED-like
Location	Cp4.1LG01: 14095654 .. 14097750 (-)
RNA-Seq Expression	Cp4.1LG01g17840
Synteny	Cp4.1LG01g17840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCCCATTACTCAGCTACCATCTCTCTCAAACTGCAAGTCTTATTAATATTATTATTTTCTAAAATACCCTTCTTCACCTTCACTTTTATTATACCCTCCCCCCCAACACCCCCCCACACACACACACACACACACACACACACACACACACACTCTCTCCCCTTAATTCTCTATTTCTCTCTGCCTCTCTCTGCCTGTTTTATGATGTAGGTCTTCCCCCACAACAAATCTCTCTCCTTTTCCCTCTCCCTCTCTCTAATTCATATCCTGTTTTGTTGGTTTGCAGGAGATCCCAAGGCAGCCCTTTAGACCTCAACAACTTACCAGAAGATTATATCAGAGATCGCAAACAGATTATCGAAGATACCTCTACTGGTAACATAAACCCTATTCCCCACTTTCCTTTTTCCTTTTGTTTGGTGCCAAAAAAAGGACCACTTTAACCAACTTCCCCTACTCTCTCTTTAGCCCAATGATTTGGGATTCTTAACTCCTTTCATGCAAATTAAAAAGAACCCCTTTTCAACACACTCAATGGGTCTCTTATTTTCAATTCACAATGAAAAGATTTGAAGAGAAATTTTAAGGTTTTGCAGGTCATCGGAAAAAGAAAAGTGGAGGGAAGGAGGGAAATGAGGAGTCCGGAAAGGTGTATGAATGCAGGTTTTGTTCTCTCAAGTTCTGCAAATCCCAGGCTCTTGGTGGCCACATGAACCGCCACCGCCAAGGCAAACTCGCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTCTTCTTTTCTTTTTTGGTTTTGTTTCTGTTAATGATGTGAAAAGAGAGAACATGAGAAAAGGAGGGATTTTTGGGTGAATTATTAGTTGCAGCTTTGTTTGTGTATGATTTGATTTTTGACTCCATTTGTGTTTGGTTTTTGGTCAGAGAGAGAGACAGAGACACTGAATCGAGCTCGTCAGCTTGTTTTCAGTAACGATAATCTGGCTGTCCAATCTCCTCCTCATTTAGGGTATTCCATTCATCTCAAATGTATTACCATTAACCTATATTTTTAAAATTACAAAAATTACAACATTTTCATATATATAATTACAATACTTAATATTTTAGTTTTCAGCTGATTTCCCTTCAAATTTTATATATATATTTTTTTTTTTTAAATAAATTTTGTGTTTTTTTTTTTTTTTTTTTTAACATTTTAGGTGCTGCCACTCAATGACACCGGGGAGCTACCACACAGCTGGCAGCGGCGGCGTAGGAAGTGATCCAACGTTGTCTCTCAGATTCCCAACAAGAATGTTCCCAGGCTCTTCCCCAACTACCCTTCTGCCGCCGACCCCATCACCACCGCCTCCTCCGCCACCTCACCAGCCATATCTATACAGCTCCCCCTCGAGGCCATCCAGTTTCCCTTCATACTATCCTCCACCGCAAGCCTCCATCAACGACTACTATGTGGGTCACGTCTTAGGGAACCCCGCACAATGCAGCCACCAGACCATGAACTACGGGTCGACAAGCAGCTCCATGGAGTCGAGTAGCTACACTTGCATCGGAGCTCCGGTGGGTCCAGCAGCGACGTTCGGCGGACGGGAGAGCGGTGGTGGAAGAGACGGATCACAGCAGCAGCGTTTGGACGTTCCCTCTTCGATCAATCGGTTTCAAGATGGGTTCTAAAAAGAAGATTAGATTTTTTTTTACCCAAAAAAAAAAAAAAAAGTTCTGAGTTATGTAATTTAAATTCTGAAATGACACGCCACCCAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAACTGACAAATGGGGTCATAATATAATAGAAGGAAAGAGGTGAGAGGGGAGTGTTGTGTTTTTATTTTAAAATTTGAGTTTGGTTAAAATGAAAGAGGTTTGGAGGTGAGAAAGAAGGTGGGCTTAGTTTGGCATGGAGATGTATTGGAGGATTGAAGAGGGTGTGTGTTTTTGTCTTCTACTGCCTTATCTGTGAAAAAGGAGCAAACTCTGAAAGGAGAGACTGATGGGACAAGAAGTTAGATATGAACTGAAACTTCCCAACCCCCCTTTTTGCAATTTCACTTCTTTTT

mRNA sequence

CACCCCATTACTCAGCTACCATCTCTCTCAAACTGCAAGTCTTATTAATATTATTATTTTCTAAAATACCCTTCTTCACCTTCACTTTTATTATACCCTCCCCCCCAACACCCCCCCACACACACACACACACACACACACACACACACACACACTCTCTCCCCTTAATTCTCTATTTCTCTCTGCCTCTCTCTGCCTGTTTTATGATGAGATCCCAAGGCAGCCCTTTAGACCTCAACAACTTACCAGAAGATTATATCAGAGATCGCAAACAGATTATCGAAGATACCTCTACTGGTCATCGGAAAAAGAAAAGTGGAGGGAAGGAGGGAAATGAGGAGTCCGGAAAGGTGTATGAATGCAGGTTTTGTTCTCTCAAGTTCTGCAAATCCCAGGCTCTTGAGAGAGAGACAGAGACACTGAATCGAGCTCGTCAGCTTGTTTTCAGTAACGATAATCTGGCTGTCCAATCTCCTCCTCATTTAGGGTGCTGCCACTCAATGACACCGGGGAGCTACCACACAGCTGGCAGCGGCGGCGTAGGAAGTGATCCAACGTTGTCTCTCAGATTCCCAACAAGAATGTTCCCAGGCTCTTCCCCAACTACCCTTCTGCCGCCGACCCCATCACCACCGCCTCCTCCGCCACCTCACCAGCCATATCTATACAGCTCCCCCTCGAGGCCATCCAGTTTCCCTTCATACTATCCTCCACCGCAAGCCTCCATCAACGACTACTATGTGGGTCACGTCTTAGGGAACCCCGCACAATGCAGCCACCAGACCATGAACTACGGGTCGACAAGCAGCTCCATGGAGTCGAGTAGCTACACTTGCATCGGAGCTCCGGTGGGTCCAGCAGCGACGTTCGGCGGACGGGAGAGCGGTGGTGGAAGAGACGGATCACAGCAGCAGCGTTTGGACGTTCCCTCTTCGATCAATCGGTTTCAAGATGGGTTCTAAAAAGAAGATTAGATTTTTTTTTACCCAAAAAAAAAAAAAAAAGTTCTGAGTTATGTAATTTAAATTCTGAAATGACACGCCACCCAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAACTGACAAATGGGGTCATAATATAATAGAAGGAAAGAGGTGAGAGGGGAGTGTTGTGTTTTTATTTTAAAATTTGAGTTTGGTTAAAATGAAAGAGGTTTGGAGGTGAGAAAGAAGGTGGGCTTAGTTTGGCATGGAGATGTATTGGAGGATTGAAGAGGGTGTGTGTTTTTGTCTTCTACTGCCTTATCTGTGAAAAAGGAGCAAACTCTGAAAGGAGAGACTGATGGGACAAGAAGTTAGATATGAACTGAAACTTCCCAACCCCCCTTTTTGCAATTTCACTTCTTTTT

Coding sequence (CDS)

ATGATGAGATCCCAAGGCAGCCCTTTAGACCTCAACAACTTACCAGAAGATTATATCAGAGATCGCAAACAGATTATCGAAGATACCTCTACTGGTCATCGGAAAAAGAAAAGTGGAGGGAAGGAGGGAAATGAGGAGTCCGGAAAGGTGTATGAATGCAGGTTTTGTTCTCTCAAGTTCTGCAAATCCCAGGCTCTTGAGAGAGAGACAGAGACACTGAATCGAGCTCGTCAGCTTGTTTTCAGTAACGATAATCTGGCTGTCCAATCTCCTCCTCATTTAGGGTGCTGCCACTCAATGACACCGGGGAGCTACCACACAGCTGGCAGCGGCGGCGTAGGAAGTGATCCAACGTTGTCTCTCAGATTCCCAACAAGAATGTTCCCAGGCTCTTCCCCAACTACCCTTCTGCCGCCGACCCCATCACCACCGCCTCCTCCGCCACCTCACCAGCCATATCTATACAGCTCCCCCTCGAGGCCATCCAGTTTCCCTTCATACTATCCTCCACCGCAAGCCTCCATCAACGACTACTATGTGGGTCACGTCTTAGGGAACCCCGCACAATGCAGCCACCAGACCATGAACTACGGGTCGACAAGCAGCTCCATGGAGTCGAGTAGCTACACTTGCATCGGAGCTCCGGTGGGTCCAGCAGCGACGTTCGGCGGACGGGAGAGCGGTGGTGGAAGAGACGGATCACAGCAGCAGCGTTTGGACGTTCCCTCTTCGATCAATCGGTTTCAAGATGGGTTCTAA

Protein sequence

MMRSQGSPLDLNNLPEDYIRDRKQIIEDTSTGHRKKKSGGKEGNEESGKVYECRFCSLKFCKSQALERETETLNRARQLVFSNDNLAVQSPPHLGCCHSMTPGSYHTAGSGGVGSDPTLSLRFPTRMFPGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSYYPPPQASINDYYVGHVLGNPAQCSHQTMNYGSTSSSMESSSYTCIGAPVGPAATFGGRESGGGRDGSQQQRLDVPSSINRFQDGF

Homology

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BLAST of Cp4.1LG01g17840 vs. ExPASy Swiss-Prot
Match: Q6S591 (Zinc finger protein JAGGED OS=Arabidopsis thaliana OX=3702 GN=JAG PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.5e-34
Identity = 114/272 (41.91%), Postives = 150/272 (55.15%), Query Frame = 0


Query: 2   MRSQGSPLDLNNLPEDYIRD-RKQIIEDTSTGHRKKKSGGKEGNEESGKVYECRFCSLKF 61
           MR + + LDLNNLP+D+ +D  KQ +E+ S+  ++KK G KEG +ESGKVYECRFCSLKF
Sbjct: 1   MRHEENYLDLNNLPDDFSKDGNKQALEEGSSSGQRKKKGSKEGKDESGKVYECRFCSLKF 60

Query: 62  CKSQAL---------ERETETLNRARQLVFSNDNLAVQSPPHLGCCHSMTPGSYHTAGSG 121
           CKSQAL         ERETETLN+ARQLV+ ND +   +PP       ++P  YH     
Sbjct: 61  CKSQALGGHMNRHRQERETETLNQARQLVYRNDTI---TPP------GISPFGYHHT--- 120

Query: 122 GVGSDPTL--SLRFPTRMFPGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSYYP 181
              +DPT+  S+     ++PGSS T L+P  P PPPPPP   PY  +  S  + F  YY 
Sbjct: 121 ---TDPTIYRSVYSSPMIYPGSSSTNLVPQPPMPPPPPP--YPYSSNQYSPHNHFNDYY- 180

Query: 182 PPQASINDYYVGHVLGNPAQCSHQTMNYGSTSSSMESSSYTCIGAPV--------GPAAT 241
                +N  + G    +P+     T      + S     YTC+GAP+        GP+  
Sbjct: 181 -----LNPSFRGSRSISPSPNLPTTTTVDYMADSPVEPGYTCVGAPIGPTGFPIRGPSIV 240

Query: 242 FGGRESGGGRDG-SQQQRLD--VPSSINRFQD 251
               E   GRDG + +QRLD  +   INRFQD
Sbjct: 241 RAPLEPPQGRDGDASRQRLDHSLRFPINRFQD 249

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BLAST of Cp4.1LG01g17840 vs. ExPASy Swiss-Prot
Match: Q9LG97 (Zinc finger protein STAMENLESS 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SL1 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.9e-26
Identity = 102/259 (39.38%), Postives = 130/259 (50.19%), Query Frame = 0


Query: 3   RSQGSPLDLNNLPEDYIRDRKQIIEDTSTGH---------RKKKSGGKEGNEESGKVYEC 62
           R +GSPLDLNNLP+++    KQ +E ++T            KKKS G  G +E+GKVYEC
Sbjct: 6   RQEGSPLDLNNLPDEF---GKQTVESSTTTAASSAEASRVTKKKSNG--GKDEAGKVYEC 65

Query: 63  RFCSLKFCKSQAL---------ERETETLNRARQLVFSNDNLAVQSPP------HLGCCH 122
           RFCSLKFCKSQAL         ERETETLNRARQLVF ND+LA           ++G   
Sbjct: 66  RFCSLKFCKSQALGGHMNRHRQERETETLNRARQLVFGNDSLAAVGAQLNFRDVNMGGGG 125

Query: 123 SMTPGSYHTAG-----SGGVGSDPTLSLRFPTRMFPGSSPTTLLPPTPSPPPPPPPHQPY 182
           +  P      G      GGVG DP + LR              + P  SPP PPP H  Y
Sbjct: 126 AAAPPPTMQMGGGGFRGGGVGGDPCIPLR-------------PVQPRLSPPQPPPYHH-Y 185

Query: 183 LYSSPSRPS-----SFPSYYPPP-----QASINDYYVGH------VLGNPAQCSHQTMNY 217
           LY++ + PS     S+P+ YP P      A++ DY +GH       L  P    H+    
Sbjct: 186 LYTTTAPPSALHPMSYPATYPAPPRHQQPAAVGDYVIGHAVSAGDALVAPPPPPHR---- 232

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BLAST of Cp4.1LG01g17840 vs. ExPASy Swiss-Prot
Match: Q6S592 (Zinc finger protein JAGGED-like OS=Arabidopsis thaliana OX=3702 GN=JGL PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.1e-15
Identity = 86/230 (37.39%), Postives = 106/230 (46.09%), Query Frame = 0


Query: 1   MMRSQGSPLDLNNLPEDYIRDRKQIIEDTSTGHRKKKSGG-KEGNEESGKVYECRFCSLK 60
           M   + + LDLNNLP+D  RD     E+  +      SGG +E   + GK YECRFCSLK
Sbjct: 1   MRADENNTLDLNNLPDDPSRDIFPFFEEGFSS--SSSSGGFREKQTKDGKEYECRFCSLK 60

Query: 61  FCKSQAL---------ERETETLNRARQLVFSNDNLAVQSPPHLGCCHSMTPGSYHTAGS 120
           F KSQAL         ERETE+LN+AR+LV  ND+     PPH G      P   +  G 
Sbjct: 61  FFKSQALGGHMNRHRQERETESLNKARELVLRNDSF----PPHQG-----PPSFSYHQGD 120

Query: 121 GGVGSDPTLS-LRFPTRMF--PGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSY 180
             +G       + +P R F  PGSS    L P            PYLY         P  
Sbjct: 121 VHIGDLTQFKPMMYPPRHFSLPGSSSILQLQP------------PYLYP--------PLS 180

Query: 181 YPPPQASINDYYVGHVLGNPAQCSHQTM-NYGSTSSSMESSSYTCIGAPV 217
            P PQ + N       +GN     HQT+ N      ++  SSYT IGAPV
Sbjct: 181 SPFPQHNTN-------IGNNG-TRHQTLTNSVCGGRALPDSSYTFIGAPV 191

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BLAST of Cp4.1LG01g17840 vs. NCBI nr
Match: XP_023538934.1 (zinc finger protein JAGGED-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 502 bits (1293), Expect = 3.86e-179
Identity = 252/261 (96.55%), Postives = 252/261 (96.55%), Query Frame = 0


Query: 1   MMRSQGSPLDLNNLPEDYIRDRKQIIEDTSTGHRKKKSGGKEGNEESGKVYECRFCSLKF 60
           MMRSQGSPLDLNNLPEDYIRDRKQIIEDTSTGHRKKKSGGKEGNEESGKVYECRFCSLKF
Sbjct: 1   MMRSQGSPLDLNNLPEDYIRDRKQIIEDTSTGHRKKKSGGKEGNEESGKVYECRFCSLKF 60

Query: 61  CKSQAL---------ERETETLNRARQLVFSNDNLAVQSPPHLGCCHSMTPGSYHTAGSG 120
           CKSQAL         ERETETLNRARQLVFSNDNLAVQSPPHLGCCHSMTPGSYHTAGSG
Sbjct: 61  CKSQALGGHMNRHRQERETETLNRARQLVFSNDNLAVQSPPHLGCCHSMTPGSYHTAGSG 120

Query: 121 GVGSDPTLSLRFPTRMFPGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSYYPPP 180
           GVGSDPTLSLRFPTRMFPGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSYYPPP
Sbjct: 121 GVGSDPTLSLRFPTRMFPGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSYYPPP 180

Query: 181 QASINDYYVGHVLGNPAQCSHQTMNYGSTSSSMESSSYTCIGAPVGPAATFGGRESGGGR 240
           QASINDYYVGHVLGNPAQCSHQTMNYGSTSSSMESSSYTCIGAPVGPAATFGGRESGGGR
Sbjct: 181 QASINDYYVGHVLGNPAQCSHQTMNYGSTSSSMESSSYTCIGAPVGPAATFGGRESGGGR 240

Query: 241 DGSQQQRLDVPSSINRFQDGF 252
           DGSQQQRLDVPSSINRFQDGF
Sbjct: 241 DGSQQQRLDVPSSINRFQDGF 261

[Close]

BLAST of Cp4.1LG01g17840 vs. NCBI nr
Match: KAG7032496.1 (Zinc finger protein JAGGED, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 500 bits (1288), Expect = 1.67e-178
Identity = 250/253 (98.81%), Postives = 250/253 (98.81%), Query Frame = 0


Query: 1   MMRSQGSPLDLNNLPEDYIRDRKQIIEDTSTGHRKKKSGGKEGNEESGKVYECRFCSLKF 60
           M RSQGSPLDLNNLPEDYIRDRKQIIEDTSTGHRKKKSGGKEGNEESGKVYECRFCSLKF
Sbjct: 1   MERSQGSPLDLNNLPEDYIRDRKQIIEDTSTGHRKKKSGGKEGNEESGKVYECRFCSLKF 60

Query: 61  CKSQALERETETLNRARQLVFSNDNLAVQSPP-HLGCCHSMTPGSYHTAGSGGVGSDPTL 120
           CKSQALERETETLNRARQLVFSNDNLAVQSPP HLGCCHSMTPGSYHTAGSGGVGSDPTL
Sbjct: 61  CKSQALERETETLNRARQLVFSNDNLAVQSPPPHLGCCHSMTPGSYHTAGSGGVGSDPTL 120

Query: 121 SLRFPTRMFPGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSYYPPPQASINDYY 180
           SLRFPTRMFPGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSYYPPPQASINDYY
Sbjct: 121 SLRFPTRMFPGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSYYPPPQASINDYY 180

Query: 181 VGHVLGNPAQCSHQTMNYGSTSSSMESSSYTCIGAPVGPAATFGGRESGGGRDGSQQQRL 240
           VGHVLGNPAQCSHQTMNYGSTSSSMESSSYTCIGAPVGPAATFGGRESG GRDGSQQQRL
Sbjct: 181 VGHVLGNPAQCSHQTMNYGSTSSSMESSSYTCIGAPVGPAATFGGRESGSGRDGSQQQRL 240

Query: 241 DVPSSINRFQDGF 252
           DVPSSINRFQDGF
Sbjct: 241 DVPSSINRFQDGF 253

[Close]

BLAST of Cp4.1LG01g17840 vs. NCBI nr
Match: XP_022971830.1 (zinc finger protein JAGGED-like [Cucurbita maxima])

HSP 1 Score: 496 bits (1276), Expect = 1.56e-176
Identity = 251/262 (95.80%), Postives = 251/262 (95.80%), Query Frame = 0


Query: 1   MMRSQGSPLDLNNLPEDYIRDRKQIIEDTSTGHRKKKSGGKEGNEESGKVYECRFCSLKF 60
           MMRSQGSPLDLNNLPEDYIRDRKQIIEDTSTGHRKKKSGGKEGNEESGKVYECRFCSLKF
Sbjct: 1   MMRSQGSPLDLNNLPEDYIRDRKQIIEDTSTGHRKKKSGGKEGNEESGKVYECRFCSLKF 60

Query: 61  CKSQAL---------ERETETLNRARQLVFSNDNLAVQSPP-HLGCCHSMTPGSYHTAGS 120
           CKSQAL         ERETETLNRARQLVFSNDNLAVQSPP HLGCCHSM PGSYHTAGS
Sbjct: 61  CKSQALGGHMNRHRQERETETLNRARQLVFSNDNLAVQSPPPHLGCCHSMAPGSYHTAGS 120

Query: 121 GGVGSDPTLSLRFPTRMFPGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSYYPP 180
           GGVGSDPTLSLRFPTRMFPGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSYYPP
Sbjct: 121 GGVGSDPTLSLRFPTRMFPGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSYYPP 180

Query: 181 PQASINDYYVGHVLGNPAQCSHQTMNYGSTSSSMESSSYTCIGAPVGPAATFGGRESGGG 240
           PQASINDYYVGHVLGNPAQCSHQTMNYGSTSSSMESSSYTCIGAPVGPAATFGGRESGGG
Sbjct: 181 PQASINDYYVGHVLGNPAQCSHQTMNYGSTSSSMESSSYTCIGAPVGPAATFGGRESGGG 240

Query: 241 RDGSQQQRLDVPSSINRFQDGF 252
           RDGSQQQRLDVPSSINRFQDGF
Sbjct: 241 RDGSQQQRLDVPSSINRFQDGF 262

[Close]

BLAST of Cp4.1LG01g17840 vs. NCBI nr
Match: XP_022953929.1 (zinc finger protein JAGGED-like [Cucurbita moschata])

HSP 1 Score: 493 bits (1270), Expect = 1.29e-175
Identity = 250/262 (95.42%), Postives = 250/262 (95.42%), Query Frame = 0


Query: 1   MMRSQGSPLDLNNLPEDYIRDRKQIIEDTSTGHRKKKSGGKEGNEESGKVYECRFCSLKF 60
           MMRSQGSPLDLNNLPEDYIRDRKQIIEDTSTGHRKKKSGGKEGNEESGKVYECRFCSLKF
Sbjct: 1   MMRSQGSPLDLNNLPEDYIRDRKQIIEDTSTGHRKKKSGGKEGNEESGKVYECRFCSLKF 60

Query: 61  CKSQAL---------ERETETLNRARQLVFSNDNLAVQSPP-HLGCCHSMTPGSYHTAGS 120
           CKSQAL         ERETETLNRARQLVFSNDNLAVQSPP HLGCCHSMTPGSYHTAGS
Sbjct: 61  CKSQALGGHMNRHRQERETETLNRARQLVFSNDNLAVQSPPPHLGCCHSMTPGSYHTAGS 120

Query: 121 GGVGSDPTLSLRFPTRMFPGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSYYPP 180
           GGVGSDPTLSLRFPTRMFPGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSYYPP
Sbjct: 121 GGVGSDPTLSLRFPTRMFPGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSYYPP 180

Query: 181 PQASINDYYVGHVLGNPAQCSHQTMNYGSTSSSMESSSYTCIGAPVGPAATFGGRESGGG 240
           PQASINDYYVGHVLGNPAQCSHQTMNYGST SSMESSSYTCIGAPVGPAATFGGRESG G
Sbjct: 181 PQASINDYYVGHVLGNPAQCSHQTMNYGSTRSSMESSSYTCIGAPVGPAATFGGRESGSG 240

Query: 241 RDGSQQQRLDVPSSINRFQDGF 252
           RDGSQQQRLDVPSSINRFQDGF
Sbjct: 241 RDGSQQQRLDVPSSINRFQDGF 262

[Close]

BLAST of Cp4.1LG01g17840 vs. NCBI nr
Match: KAG6601780.1 (Zinc finger protein JAGGED, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 492 bits (1266), Expect = 7.83e-175
Identity = 249/262 (95.04%), Postives = 250/262 (95.42%), Query Frame = 0


Query: 1   MMRSQGSPLDLNNLPEDYIRDRKQIIEDTSTGHRKKKSGGKEGNEESGKVYECRFCSLKF 60
           + RSQGSPLDLNNLPEDYIRDRKQIIEDTSTGHRKKKSGGKEGNEESGKVYECRFCSLKF
Sbjct: 12  LKRSQGSPLDLNNLPEDYIRDRKQIIEDTSTGHRKKKSGGKEGNEESGKVYECRFCSLKF 71

Query: 61  CKSQAL---------ERETETLNRARQLVFSNDNLAVQSPP-HLGCCHSMTPGSYHTAGS 120
           CKSQAL         ERETETLNRARQLVFSNDNLAVQSPP HLGCCHSMTPGSYHTAGS
Sbjct: 72  CKSQALGGHMNRHRQERETETLNRARQLVFSNDNLAVQSPPPHLGCCHSMTPGSYHTAGS 131

Query: 121 GGVGSDPTLSLRFPTRMFPGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSYYPP 180
           GGVGSDPTLSLRFPTRMFPGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSYYPP
Sbjct: 132 GGVGSDPTLSLRFPTRMFPGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSYYPP 191

Query: 181 PQASINDYYVGHVLGNPAQCSHQTMNYGSTSSSMESSSYTCIGAPVGPAATFGGRESGGG 240
           PQASINDYYVGHVLGNPAQCSHQTMNYGSTSSSMESSSYTCIGAPVGPAATFGGRESG G
Sbjct: 192 PQASINDYYVGHVLGNPAQCSHQTMNYGSTSSSMESSSYTCIGAPVGPAATFGGRESGSG 251

Query: 241 RDGSQQQRLDVPSSINRFQDGF 252
           RDGSQQQRLDVPSSINRFQDGF
Sbjct: 252 RDGSQQQRLDVPSSINRFQDGF 273

[Close]

BLAST of Cp4.1LG01g17840 vs. ExPASy TrEMBL
Match: A0A6J1I6U1 (zinc finger protein JAGGED-like OS=Cucurbita maxima OX=3661 GN=LOC111470498 PE=4 SV=1)

HSP 1 Score: 496 bits (1276), Expect = 7.58e-177
Identity = 251/262 (95.80%), Postives = 251/262 (95.80%), Query Frame = 0


Query: 1   MMRSQGSPLDLNNLPEDYIRDRKQIIEDTSTGHRKKKSGGKEGNEESGKVYECRFCSLKF 60
           MMRSQGSPLDLNNLPEDYIRDRKQIIEDTSTGHRKKKSGGKEGNEESGKVYECRFCSLKF
Sbjct: 1   MMRSQGSPLDLNNLPEDYIRDRKQIIEDTSTGHRKKKSGGKEGNEESGKVYECRFCSLKF 60

Query: 61  CKSQAL---------ERETETLNRARQLVFSNDNLAVQSPP-HLGCCHSMTPGSYHTAGS 120
           CKSQAL         ERETETLNRARQLVFSNDNLAVQSPP HLGCCHSM PGSYHTAGS
Sbjct: 61  CKSQALGGHMNRHRQERETETLNRARQLVFSNDNLAVQSPPPHLGCCHSMAPGSYHTAGS 120

Query: 121 GGVGSDPTLSLRFPTRMFPGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSYYPP 180
           GGVGSDPTLSLRFPTRMFPGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSYYPP
Sbjct: 121 GGVGSDPTLSLRFPTRMFPGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSYYPP 180

Query: 181 PQASINDYYVGHVLGNPAQCSHQTMNYGSTSSSMESSSYTCIGAPVGPAATFGGRESGGG 240
           PQASINDYYVGHVLGNPAQCSHQTMNYGSTSSSMESSSYTCIGAPVGPAATFGGRESGGG
Sbjct: 181 PQASINDYYVGHVLGNPAQCSHQTMNYGSTSSSMESSSYTCIGAPVGPAATFGGRESGGG 240

Query: 241 RDGSQQQRLDVPSSINRFQDGF 252
           RDGSQQQRLDVPSSINRFQDGF
Sbjct: 241 RDGSQQQRLDVPSSINRFQDGF 262

[Close]

BLAST of Cp4.1LG01g17840 vs. ExPASy TrEMBL
Match: A0A6J1GRC2 (zinc finger protein JAGGED-like OS=Cucurbita moschata OX=3662 GN=LOC111456332 PE=4 SV=1)

HSP 1 Score: 493 bits (1270), Expect = 6.23e-176
Identity = 250/262 (95.42%), Postives = 250/262 (95.42%), Query Frame = 0


Query: 1   MMRSQGSPLDLNNLPEDYIRDRKQIIEDTSTGHRKKKSGGKEGNEESGKVYECRFCSLKF 60
           MMRSQGSPLDLNNLPEDYIRDRKQIIEDTSTGHRKKKSGGKEGNEESGKVYECRFCSLKF
Sbjct: 1   MMRSQGSPLDLNNLPEDYIRDRKQIIEDTSTGHRKKKSGGKEGNEESGKVYECRFCSLKF 60

Query: 61  CKSQAL---------ERETETLNRARQLVFSNDNLAVQSPP-HLGCCHSMTPGSYHTAGS 120
           CKSQAL         ERETETLNRARQLVFSNDNLAVQSPP HLGCCHSMTPGSYHTAGS
Sbjct: 61  CKSQALGGHMNRHRQERETETLNRARQLVFSNDNLAVQSPPPHLGCCHSMTPGSYHTAGS 120

Query: 121 GGVGSDPTLSLRFPTRMFPGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSYYPP 180
           GGVGSDPTLSLRFPTRMFPGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSYYPP
Sbjct: 121 GGVGSDPTLSLRFPTRMFPGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSYYPP 180

Query: 181 PQASINDYYVGHVLGNPAQCSHQTMNYGSTSSSMESSSYTCIGAPVGPAATFGGRESGGG 240
           PQASINDYYVGHVLGNPAQCSHQTMNYGST SSMESSSYTCIGAPVGPAATFGGRESG G
Sbjct: 181 PQASINDYYVGHVLGNPAQCSHQTMNYGSTRSSMESSSYTCIGAPVGPAATFGGRESGSG 240

Query: 241 RDGSQQQRLDVPSSINRFQDGF 252
           RDGSQQQRLDVPSSINRFQDGF
Sbjct: 241 RDGSQQQRLDVPSSINRFQDGF 262

[Close]

BLAST of Cp4.1LG01g17840 vs. ExPASy TrEMBL
Match: A0A5D3BYD4 (Zinc finger protein JAGGED OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00720 PE=4 SV=1)

HSP 1 Score: 402 bits (1034), Expect = 2.26e-139
Identity = 216/256 (84.38%), Postives = 226/256 (88.28%), Query Frame = 0


Query: 3   RSQGSPLDLNNLPEDYIRDRKQIIEDTSTGHRKKKSGGKEGNEESGKVYECRFCSLKFCK 62
           RS+GSPLDLNNLPEDYIRD KQIIED+S+GHRKKKSG KEG EESGKVYECRFCSLKFCK
Sbjct: 49  RSEGSPLDLNNLPEDYIRDGKQIIEDSSSGHRKKKSGLKEGKEESGKVYECRFCSLKFCK 108

Query: 63  SQALERETETLNRARQLVFSNDNLAVQSPP-HLGCCHSMTPGSYHTAG-SGGVGSDPTLS 122
           SQALERETETLNRARQLVFSNDNLA Q PP HLGCCHSM P +YHTAG SG VGSD TL 
Sbjct: 109 SQALERETETLNRARQLVFSNDNLAAQPPPPHLGCCHSMAPANYHTAGGSGSVGSDSTLP 168

Query: 123 LRFPTRMFPGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSYYPPPQASINDYYV 182
           LRFPTRMF GSSP TLLP  P PPP P  HQPYLY+SP+RPSSFPSYYPPPQASINDYYV
Sbjct: 169 LRFPTRMFSGSSPGTLLP-QPPPPPLPSSHQPYLYNSPTRPSSFPSYYPPPQASINDYYV 228

Query: 183 GHVLGNPAQCSHQTMNYGSTSSSMESSSYTCIGAPVGPAAT-FGGRESGG--GRDGSQQQ 242
           GHVLGNP+QCSHQT+NYGS  S +ESSSYTCIGAPVG AA  FGGR+ GG  GRDGSQQQ
Sbjct: 229 GHVLGNPSQCSHQTVNYGS--SPVESSSYTCIGAPVGHAAAGFGGRDGGGSGGRDGSQQQ 288

Query: 243 -RLDVPSSINRFQDGF 252
            RLDVPSSINRFQDGF
Sbjct: 289 QRLDVPSSINRFQDGF 301

[Close]

BLAST of Cp4.1LG01g17840 vs. ExPASy TrEMBL
Match: A0A1S3CQ11 (zinc finger protein JAGGED OS=Cucumis melo OX=3656 GN=LOC103503384 PE=4 SV=1)

HSP 1 Score: 396 bits (1018), Expect = 1.66e-137
Identity = 217/267 (81.27%), Postives = 227/267 (85.02%), Query Frame = 0


Query: 2   MRSQGSPLDLNNLPEDYIRDRKQIIEDTSTGHRKKKSGGKEGNEESGKVYECRFCSLKFC 61
           MRS+GSPLDLNNLPEDYIRD KQIIED+S+GHRKKKSG KEG EESGKVYECRFCSLKFC
Sbjct: 1   MRSEGSPLDLNNLPEDYIRDGKQIIEDSSSGHRKKKSGLKEGKEESGKVYECRFCSLKFC 60

Query: 62  KSQAL---------ERETETLNRARQLVFSNDNLAVQSPP--HLGCCHSMTPGSYHTAG- 121
           KSQAL         ERETETLNRARQLVFSNDNLA Q PP  HLGCCHSM P +YHTAG 
Sbjct: 61  KSQALGGHMNRHRQERETETLNRARQLVFSNDNLAAQPPPPPHLGCCHSMAPANYHTAGG 120

Query: 122 SGGVGSDPTLSLRFPTRMFPGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSYYP 181
           SG VGSD TL LRFPTRMF GSSP TLLP  P PPP P  HQPYLY+SP+RPSSFPSYYP
Sbjct: 121 SGSVGSDSTLPLRFPTRMFSGSSPGTLLP-QPPPPPLPSSHQPYLYNSPTRPSSFPSYYP 180

Query: 182 PPQASINDYYVGHVLGNPAQCSHQTMNYGSTSSSMESSSYTCIGAPVGPAAT-FGGRESG 241
           PPQASINDYYVGHVLGNP+QCSHQT+NYGS  S +ESSSYTCIGAPVG AA  FGGR+ G
Sbjct: 181 PPQASINDYYVGHVLGNPSQCSHQTVNYGS--SPVESSSYTCIGAPVGHAAAGFGGRDGG 240

Query: 242 G--GRDGSQQQ-RLDVPSSINRFQDGF 252
           G  GRDGSQQQ RLDVPSSINRFQDGF
Sbjct: 241 GSGGRDGSQQQQRLDVPSSINRFQDGF 264

[Close]

BLAST of Cp4.1LG01g17840 vs. ExPASy TrEMBL
Match: A0A0A0KTC2 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G372190 PE=4 SV=1)

HSP 1 Score: 395 bits (1015), Expect = 5.12e-137
Identity = 216/265 (81.51%), Postives = 227/265 (85.66%), Query Frame = 0


Query: 3   RSQGSPLDLNNLPEDYIRDRKQIIEDTSTGHRKKKSGGKEGNEESGKVYECRFCSLKFCK 62
           RS+GSPLDLNNLPEDYIRD KQIIED+S+GHRKKKSG KEG EESGKVYECRFCSLKFCK
Sbjct: 5   RSEGSPLDLNNLPEDYIRDGKQIIEDSSSGHRKKKSGLKEGKEESGKVYECRFCSLKFCK 64

Query: 63  SQAL---------ERETETLNRARQLVFSNDNLAVQSPP-HLGCCHSMTPGSYHTAG-SG 122
           SQAL         ERETETLNRARQLVFSNDNLA Q PP HLGCCHSM P +YH+AG SG
Sbjct: 65  SQALGGHMNRHRQERETETLNRARQLVFSNDNLAAQPPPPHLGCCHSMAPANYHSAGGSG 124

Query: 123 GVGSDPTLSLRFPTRMFPGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSYYPPP 182
            VGSD TL LRFPTRMF GSSP TLLP  P PPP P  HQPYLY+SP+RPSSFPSYYPPP
Sbjct: 125 NVGSDSTLPLRFPTRMFSGSSPGTLLP-QPPPPPLPSSHQPYLYNSPTRPSSFPSYYPPP 184

Query: 183 QASINDYYVGHVLGNPAQCSHQTMNYGSTSSSMESSSYTCIGAPVGPAAT-FGGRESGG- 242
           QASINDYYVGHVLGNP+QCSHQT+NYGS  SS+ESSSYTCIGAPVG AA  FGGR+ GG 
Sbjct: 185 QASINDYYVGHVLGNPSQCSHQTVNYGS--SSVESSSYTCIGAPVGHAAVGFGGRDGGGS 244

Query: 243 -GRDGSQQQ-RLDVPSSINRFQDGF 252
            GRDGSQQQ RLDVPSSINRFQDGF
Sbjct: 245 GGRDGSQQQQRLDVPSSINRFQDGF 266

[Close]

BLAST of Cp4.1LG01g17840 vs. TAIR 10
Match: AT1G68480.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-35
Identity = 114/272 (41.91%), Postives = 150/272 (55.15%), Query Frame = 0


Query: 2   MRSQGSPLDLNNLPEDYIRD-RKQIIEDTSTGHRKKKSGGKEGNEESGKVYECRFCSLKF 61
           MR + + LDLNNLP+D+ +D  KQ +E+ S+  ++KK G KEG +ESGKVYECRFCSLKF
Sbjct: 1   MRHEENYLDLNNLPDDFSKDGNKQALEEGSSSGQRKKKGSKEGKDESGKVYECRFCSLKF 60

Query: 62  CKSQAL---------ERETETLNRARQLVFSNDNLAVQSPPHLGCCHSMTPGSYHTAGSG 121
           CKSQAL         ERETETLN+ARQLV+ ND +   +PP       ++P  YH     
Sbjct: 61  CKSQALGGHMNRHRQERETETLNQARQLVYRNDTI---TPP------GISPFGYHHT--- 120

Query: 122 GVGSDPTL--SLRFPTRMFPGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSYYP 181
              +DPT+  S+     ++PGSS T L+P  P PPPPPP   PY  +  S  + F  YY 
Sbjct: 121 ---TDPTIYRSVYSSPMIYPGSSSTNLVPQPPMPPPPPP--YPYSSNQYSPHNHFNDYY- 180

Query: 182 PPQASINDYYVGHVLGNPAQCSHQTMNYGSTSSSMESSSYTCIGAPV--------GPAAT 241
                +N  + G    +P+     T      + S     YTC+GAP+        GP+  
Sbjct: 181 -----LNPSFRGSRSISPSPNLPTTTTVDYMADSPVEPGYTCVGAPIGPTGFPIRGPSIV 240

Query: 242 FGGRESGGGRDG-SQQQRLD--VPSSINRFQD 251
               E   GRDG + +QRLD  +   INRFQD
Sbjct: 241 RAPLEPPQGRDGDASRQRLDHSLRFPINRFQD 249

[Close]

BLAST of Cp4.1LG01g17840 vs. TAIR 10
Match: AT1G13400.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-16
Identity = 86/230 (37.39%), Postives = 106/230 (46.09%), Query Frame = 0


Query: 1   MMRSQGSPLDLNNLPEDYIRDRKQIIEDTSTGHRKKKSGG-KEGNEESGKVYECRFCSLK 60
           M   + + LDLNNLP+D  RD     E+  +      SGG +E   + GK YECRFCSLK
Sbjct: 1   MRADENNTLDLNNLPDDPSRDIFPFFEEGFSS--SSSSGGFREKQTKDGKEYECRFCSLK 60

Query: 61  FCKSQAL---------ERETETLNRARQLVFSNDNLAVQSPPHLGCCHSMTPGSYHTAGS 120
           F KSQAL         ERETE+LN+AR+LV  ND+     PPH G      P   +  G 
Sbjct: 61  FFKSQALGGHMNRHRQERETESLNKARELVLRNDSF----PPHQG-----PPSFSYHQGD 120

Query: 121 GGVGSDPTLS-LRFPTRMF--PGSSPTTLLPPTPSPPPPPPPHQPYLYSSPSRPSSFPSY 180
             +G       + +P R F  PGSS    L P            PYLY         P  
Sbjct: 121 VHIGDLTQFKPMMYPPRHFSLPGSSSILQLQP------------PYLYP--------PLS 180

Query: 181 YPPPQASINDYYVGHVLGNPAQCSHQTM-NYGSTSSSMESSSYTCIGAPV 217
            P PQ + N       +GN     HQT+ N      ++  SSYT IGAPV
Sbjct: 181 SPFPQHNTN-------IGNNG-TRHQTLTNSVCGGRALPDSSYTFIGAPV 191

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g17840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6S591	1.5e-34	41.91	Zinc finger protein JAGGED OS=Arabidopsis thaliana OX=3702 GN=JAG PE=1 SV=1	[more]
Q9LG97	5.9e-26	39.38	Zinc finger protein STAMENLESS 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SL1...	[more]
Q6S592	2.1e-15	37.39	Zinc finger protein JAGGED-like OS=Arabidopsis thaliana OX=3702 GN=JGL PE=2 SV=1	[more]

BLAST of Cp4.1LG01g17840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538934.1	3.86e-179	96.55	zinc finger protein JAGGED-like [Cucurbita pepo subsp. pepo]	[more]
KAG7032496.1	1.67e-178	98.81	Zinc finger protein JAGGED, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022971830.1	1.56e-176	95.80	zinc finger protein JAGGED-like [Cucurbita maxima]	[more]
XP_022953929.1	1.29e-175	95.42	zinc finger protein JAGGED-like [Cucurbita moschata]	[more]
KAG6601780.1	7.83e-175	95.04	Zinc finger protein JAGGED, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Cp4.1LG01g17840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I6U1	7.58e-177	95.80	zinc finger protein JAGGED-like OS=Cucurbita maxima OX=3661 GN=LOC111470498 PE=4...	[more]
A0A6J1GRC2	6.23e-176	95.42	zinc finger protein JAGGED-like OS=Cucurbita moschata OX=3662 GN=LOC111456332 PE...	[more]
A0A5D3BYD4	2.26e-139	84.38	Zinc finger protein JAGGED OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3CQ11	1.66e-137	81.27	zinc finger protein JAGGED OS=Cucumis melo OX=3656 GN=LOC103503384 PE=4 SV=1	[more]
A0A0A0KTC2	5.12e-137	81.51	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G372190 P...	[more]

BLAST of Cp4.1LG01g17840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68480.1	1.1e-35	41.91	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT1G13400.1	1.5e-16	37.39	C2H2 and C2HC zinc fingers superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 230..252
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 220..252
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..46
None	No IPR available	PANTHER	PTHR45730	ZINC FINGER PROTEIN JAGGED	coord: 2..236
IPR031113	Zinc finger protein JAGGED-like	PANTHER	PTHR45730:SF32	ZINC FINGER PROTEIN JAGGED	coord: 2..236

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g17840.1	Cp4.1LG01g17840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0001522	pseudouridine synthesis
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding