Cp4.1LG01g17760 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g17760
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	CLAVATA3/ESR (CLE)-related protein 12
Location	Cp4.1LG01: 12954495 .. 12954794 (+)
RNA-Seq Expression	Cp4.1LG01g17760
Synteny	Cp4.1LG01g17760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTGCAAATCAATACCAAACATCACATTTTCCTATTCTTCCTCCTCTAACCATCCCTTGACTACAAGGAAAGTACTTGCTAGCAAGGTTGACTTCACTCCCTTTTTTCCCCACCCGAAGCCAAATCGACTCAGAAAGCATTCACGACCCGCTGTCAAACTTGAACCGCCCGACTCTGCTGCAGACGACGTTGATCCGCTCTACGGGGTTGAGAAGCGGCGTGTTCCTAGGTCCAAACCCATTGCACAATTGATGCATTCTCTGGCCATGGGAGAAGAAGAAAAGGTTCATATATAG

mRNA sequence

ATGAATTGCAAATCAATACCAAACATCACATTTTCCTATTCTTCCTCCTCTAACCATCCCTTGACTACAAGGAAAGTACTTGCTAGCAAGGTTGACTTCACTCCCTTTTTTCCCCACCCGAAGCCAAATCGACTCAGAAAGCATTCACGACCCGCTGTCAAACTTGAACCGCCCGACTCTGCTGCAGACGACGTTGATCCGCTCTACGGGGTTGAGAAGCGGCGTGTTCCTAGGTCCAAACCCATTGCACAATTGATGCATTCTCTGGCCATGGGAGAAGAAGAAAAGGTTCATATATAG

Coding sequence (CDS)

ATGAATTGCAAATCAATACCAAACATCACATTTTCCTATTCTTCCTCCTCTAACCATCCCTTGACTACAAGGAAAGTACTTGCTAGCAAGGTTGACTTCACTCCCTTTTTTCCCCACCCGAAGCCAAATCGACTCAGAAAGCATTCACGACCCGCTGTCAAACTTGAACCGCCCGACTCTGCTGCAGACGACGTTGATCCGCTCTACGGGGTTGAGAAGCGGCGTGTTCCTAGGTCCAAACCCATTGCACAATTGATGCATTCTCTGGCCATGGGAGAAGAAGAAAAGGTTCATATATAG

Protein sequence

MNCKSIPNITFSYSSSSNHPLTTRKVLASKVDFTPFFPHPKPNRLRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPRSKPIAQLMHSLAMGEEEKVHI

Homology

[Close]

BLAST of Cp4.1LG01g17760 vs. ExPASy Swiss-Prot
Match: Q29PU4 (CLAVATA3/ESR (CLE)-related protein 12 OS=Arabidopsis thaliana OX=3702 GN=CLE12 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.2e-04
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 18  NHPLTTRKVLASKVDFTPFFPHPKPNRLRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVP 77
           ++ L +RKVL+ + DFTPF  H + N    H R   + +      D++DP YGVEKRRVP
Sbjct: 59  SYRLVSRKVLSDRFDFTPF--HSRDNSRHNH-RSGEQYD-----GDEIDPRYGVEKRRVP 110

[Close]

BLAST of Cp4.1LG01g17760 vs. NCBI nr
Match: KAG7032483.1 (CLAVATA3/ESR (CLE)-related protein 12, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 153 bits (387), Expect = 2.51e-46
Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MNCKSIPNITFSYSSSSNHPLTTRKVLASKVDFTPFFPHPKPNRLRKHSRPAVKLEPPDS 60
          MNCKSIPNITFSYSSSSNHPLTTRK LASKVDFTPFFPHP+PNR RKHSRPAVKLEPPDS
Sbjct: 1  MNCKSIPNITFSYSSSSNHPLTTRKELASKVDFTPFFPHPQPNRPRKHSRPAVKLEPPDS 60

Query: 61 AADDVDPLYGVEKRRVP 77
          AADDVDPLYGVEKRRVP
Sbjct: 61 AADDVDPLYGVEKRRVP 77

[Close]

BLAST of Cp4.1LG01g17760 vs. NCBI nr
Match: KAG6601759.1 (CLAVATA3/ESR (CLE)-related protein 12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 153 bits (387), Expect = 4.61e-46
Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MNCKSIPNITFSYSSSSNHPLTTRKVLASKVDFTPFFPHPKPNRLRKHSRPAVKLEPPDS 60
          MNCKSIPNITFSYSSSSNHPLTTRK LASKVDFTPFFPHP+PNR RKHSRPAVKLEPPDS
Sbjct: 21 MNCKSIPNITFSYSSSSNHPLTTRKELASKVDFTPFFPHPQPNRPRKHSRPAVKLEPPDS 80

Query: 61 AADDVDPLYGVEKRRVP 77
          AADDVDPLYGVEKRRVP
Sbjct: 81 AADDVDPLYGVEKRRVP 97

[Close]

BLAST of Cp4.1LG01g17760 vs. NCBI nr
Match: XP_023903065.1 (CLAVATA3/ESR (CLE)-related protein 12 [Quercus suber])

HSP 1 Score: 65.5 bits (158), Expect = 4.08e-11
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 1   MNCKSIPNITFSYSSSSNHPLTTRKVLASKVDFTPFFPHPKPNRLRK--HSRPAVKLE-P 60
           +N K I  IT+S +  SNHPL TRKVLAS+ DFTPF  H +  + ++  H + +  +   
Sbjct: 33  INTKQITTITYS-TVLSNHPLITRKVLASRFDFTPFVKHHQQQQQQQQDHMKRSQNMHVK 92

Query: 61  PDSAADDVDPLYGVEKRRVP 77
           PD    ++DP YGVEKRRVP
Sbjct: 93  PDPDGSEIDPRYGVEKRRVP 111

[Close]

BLAST of Cp4.1LG01g17760 vs. NCBI nr
Match: XP_027365548.1 (CLAVATA3/ESR (CLE)-related protein 12 [Abrus precatorius])

HSP 1 Score: 64.7 bits (156), Expect = 6.75e-11
Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 13  YSSSSNHPLTTRKVLASKVDFTPFFPHPKPNRLRKHSRPAVKLE--PPDSAADDVDPLYG 72
           +S  S+HP  +RKVLASK DFTPFF H   ++  KH  P V ++  PPD+   ++DP YG
Sbjct: 42  HSIPSHHPFMSRKVLASKFDFTPFFKHH--HQHYKHPPPGVSVQHDPPDT---EIDPRYG 101

Query: 73  VEKRRVP 77
           VEKRRVP
Sbjct: 102 VEKRRVP 103

[Close]

BLAST of Cp4.1LG01g17760 vs. NCBI nr
Match: KAF3958485.1 (hypothetical protein CMV_016625 [Castanea mollissima])

HSP 1 Score: 63.5 bits (153), Expect = 2.52e-10
Identity = 38/84 (45.24%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 1   MNCKSIPNITFSYSSSSNHPLTTRKVLASKVDFTPFFPH------PKPNRLRKHSRPAVK 60
           +N K I  IT+S +  SNHPL TRKVLAS+ DFTPF  H       +  + + H + +  
Sbjct: 33  INTKQITTITYS-TVLSNHPLITRKVLASRFDFTPFVKHHQQLQQQQQQQQQDHMKRSQN 92

Query: 61  LE-PPDSAADDVDPLYGVEKRRVP 77
           +   PD    ++DP YGVEKRRVP
Sbjct: 93  MHVKPDPDGSEIDPRYGVEKRRVP 115

[Close]

BLAST of Cp4.1LG01g17760 vs. ExPASy TrEMBL
Match: A0A0A0KPQ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G577440 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.03e-23
Identity = 51/78 (65.38%), Postives = 55/78 (70.51%), Query Frame = 0


Query: 1   MNCKSIPNITFSY-SSSSNHPLTTRKVLASKVDFTPFFPHPKPNRLRKHSRPAVKLEPPD 60
           MN +  P ITFSY SSSSNHPL TRKVL SKVDFTPFF H  PN+ RKHS P       +
Sbjct: 32  MNHRPTPTITFSYYSSSSNHPLITRKVLTSKVDFTPFFRHRHPNQPRKHSHPTDTNVVDE 91

Query: 61  SAADDVDPLYGVEKRRVP 77
            A  D+DP YGVEKRRVP
Sbjct: 92  PAPSDIDPRYGVEKRRVP 109

[Close]

BLAST of Cp4.1LG01g17760 vs. ExPASy TrEMBL
Match: A0A7N2KK79 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.88e-13
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 1   MNCKSIPNITFSYSSSSNHPLTTRKVLASKVDFTPFFPHPKPNRLRKHSRPAVKLE-PPD 60
           +N K I  IT+S +  SNHPL TRKVLAS+ DFTPF  H +  + + H + +  +   PD
Sbjct: 33  INTKQITTITYS-TVLSNHPLITRKVLASRFDFTPFVKHHQQQQQQDHMKLSQNMHVKPD 92

Query: 61  SAADDVDPLYGVEKRRVP 77
               ++DP YGVEKRRVP
Sbjct: 93  PDGSEIDPRYGVEKRRVP 109

[Close]

BLAST of Cp4.1LG01g17760 vs. ExPASy TrEMBL
Match: A0A2N9J7P0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60537 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.51e-12
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 1   MNCKSIPNITFSYSSSSNHPLTTRKVLASKVDFTPFFPHPKPNRLRK--HSRPAVKLE-P 60
           +N K I  +T+S  S  +HPL TRKVLASK DFTPF  H +  + ++  HS+ +  +   
Sbjct: 26  INNKQISTMTYSSLSIHHHPLITRKVLASKFDFTPFVKHHQQRQQQQQDHSKRSQNMHVQ 85

Query: 61  PDSAADDVDPLYGVEKRRVP 77
           P+ A  ++DP YGVEKRRVP
Sbjct: 86  PEPAESEIDPRYGVEKRRVP 105

[Close]

BLAST of Cp4.1LG01g17760 vs. ExPASy TrEMBL
Match: V7BG00 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G101800g PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.76e-10
Identity = 34/63 (53.97%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 15  SSSNHPLTTRKVLASKVDFTPFFPHPKPNRLRKHSRPAVKLEPPDSAADDVDPLYGVEKR 74
           SSS+H L  RK LA+K DF+PFF H       KH +P V + P D +  D+DP YGVEKR
Sbjct: 45  SSSHHLLVGRKFLATKFDFSPFFKH-----HHKHHQPGVAVHP-DPSDTDIDPRYGVEKR 101

Query: 75  RVP 77
           RVP
Sbjct: 105 RVP 101

[Close]

BLAST of Cp4.1LG01g17760 vs. ExPASy TrEMBL
Match: A0A1Q3CBK6 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_20954 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.90e-09
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 8  NITFSYSSSSNHPLTTRKVLASKVDFTPFFPHPKPNRLRKHSRPAVKLEPPDSAADDVDP 67
          NITF+YSS SNH L  RKV  SK+DFTP   HP+  + +K SR  ++++P  S  + +D 
Sbjct: 33 NITFTYSSLSNHHLINRKVFISKLDFTPIQNHPQ-QQHKKRSRD-MQVQPAPSG-NQIDL 92

Query: 68 LYGVEKRRVP 77
           YGVEKR VP
Sbjct: 93 RYGVEKRLVP 99

[Close]

BLAST of Cp4.1LG01g17760 vs. TAIR 10
Match: AT1G68795.1 (CLAVATA3/ESR-RELATED 12 )

HSP 1 Score: 45.8 bits (107), Expect = 2.3e-05
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 18  NHPLTTRKVLASKVDFTPFFPHPKPNRLRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVP 77
           ++ L +RKVL+ + DFTPF  H + N    H R   + +      D++DP YGVEKRRVP
Sbjct: 59  SYRLVSRKVLSDRFDFTPF--HSRDNSRHNH-RSGEQYD-----GDEIDPRYGVEKRRVP 110

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g17760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q29PU4	3.2e-04	43.33	CLAVATA3/ESR (CLE)-related protein 12 OS=Arabidopsis thaliana OX=3702 GN=CLE12 P...	[more]

BLAST of Cp4.1LG01g17760 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032483.1	2.51e-46	96.10	CLAVATA3/ESR (CLE)-related protein 12, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAG6601759.1	4.61e-46	96.10	CLAVATA3/ESR (CLE)-related protein 12, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_023903065.1	4.08e-11	47.50	CLAVATA3/ESR (CLE)-related protein 12 [Quercus suber]	[more]
XP_027365548.1	6.75e-11	53.73	CLAVATA3/ESR (CLE)-related protein 12 [Abrus precatorius]	[more]
KAF3958485.1	2.52e-10	45.24	hypothetical protein CMV_016625 [Castanea mollissima]	[more]

BLAST of Cp4.1LG01g17760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPQ3	3.03e-23	65.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G577440 PE=3 SV=1	[more]
A0A7N2KK79	5.88e-13	48.72	Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
A0A2N9J7P0	1.51e-12	47.50	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60537 PE=3 SV=1	[more]
V7BG00	1.76e-10	53.97	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G101800g PE=3 ...	[more]
A0A1Q3CBK6	1.90e-09	51.43	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_20954 PE=3...	[more]

BLAST of Cp4.1LG01g17760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68795.1	2.3e-05	43.33	CLAVATA3/ESR-RELATED 12	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..66
None	No IPR available	PANTHER	PTHR34359:SF20	CLAVATA3/ESR (CLE)-RELATED PROTEIN 13	coord: 6..77
IPR039618	CLAVATA3/ESR (CLE)-related protein 9/10/11/12/13	PANTHER	PTHR34359	CLAVATA3/ESR (CLE)-RELATED PROTEIN 10	coord: 6..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g17760.1	Cp4.1LG01g17760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity