Cp4.1LG01g17680 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g17680
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RING-type domain-containing protein
Location	Cp4.1LG01: 13197792 .. 13200035 (+)
RNA-Seq Expression	Cp4.1LG01g17680
Synteny	Cp4.1LG01g17680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTGGAGACTAGAGTGTTGACATGGAGGAGGGTGTTCAAGTCTCTCCAGGCTTTGGCAGCCCATGGTTTTCTTTTGTCCTTCACGCTTACGCTTGCTCTCAAGCTCGACCATCTCGTCTCTTACTCTTGGTGGTTCGTACCTCTCTCAATTCCTTATTCAACTTTTCTGTTTCTTTTGCAGAATATTAGTGGAACCCATTTGTAATTTTGTGTAATTTGAACTTTTTTGGGTCTGAATTCTGAAGTTCCTTCATTATTTGGTGGTATGGAGAATGTAGAAATGAATTTGGAGGTGTTAGCCTGATATCTCGCTAGCATTTTGTTGTGTTTCTCTGCTCTTATCTTCTGCTAACAATTTCTGCCCTGCTTTGTTNTTGAGGCGCTACCTCATAAAATTCTCTCTTTGGTGGGGATAACATAGTGTATACTAGCCTTCTCTTGTCATCCTTGGGAGGTTAGTTGGTGAACCCTTCTTATAGGTCCATCAAGTCACACAAGGTCAGGGGAGTGACCCTCTTGTGTTTGTCAACTACTAAGATTACCCGTGTAATCCCATGTCTTCTCTCAAGACGAATTTATTGTGCAAGGTAATCCAATTGAACTGTCGGTCACACAACCCTAACCAACCTAGGCTTGGCTTGACAATACATCTTCACACCTGCGCAGAAACCTAGAATTCATCGCAATTTTTCAGATTCTTTCCATTTTTTTTTTTAATTTTCATATCTTTCTTGAAGTAACTCGAATCAACTTGGTTCTTTTACTAAAGTTTTATAAATTTTATCTATCTTTATAATTTTTTTTTTTGTAATTTATAAATACATACGGGAAGTGGGTCTGATTCAACTCAAGATCTCTTCACGAAACTTGTGTGAAACATCTCCAAGTACGACATGTGGAAAACTAAGAACCTAAATCCAATTGAGGATTTGAGAGAAAACCAAAATCAACCCTATGAAATATTACTTTATGTTCTCCATCGATTCTTCATGGATTTGAGTGATTCATAAGTCTAGAATTGTTCTCTTCTTGAACATCTCTTGAGAAGAAACTTTGATGAAATTCAGGCTCTAAACCGTCATTTAATCTAATTCTCTCTCAAAATCCTAACCCTTTTTATTTTTCTTTTTTACTCTTTCTTTTTATTTCTTCCCCTTTCATGGCATGCTTAGGGCACTCACGGACCCAATAAAGAAAGAGGGTTCAAAATGACATTTTTACCCCTGAATAGTCTTTGGGCGACTTTTTCGTAATTTTTCACCATTTTCTTTCATATTTTTTTCAGGTTATTGGGATTATTTTAAACATGTTTCCCTTTTAACTCATCTTAAAATTTTCGAAGGTAAATATCACTTTTAACCTATTTTTCGAACTCATATTTATTTAATATTAAAAGAAAAAACGAAATGAAACTTAGTTATTGAGTTTCGAAAAATAGATATTAATATAAAAAACCCAAACAGAAAATTACCATTTTCCCAAGTTTGGTGGGGTAATAAGTGAAAGTTAAAGAACTAAATAGCTAATTTTATTTTCTCCCTATTATTTTTTTACTTATTTATTATTGAGAATTTAAATTTGTGGACAAAAATTTTCGTGGTGGAAGTAGTTTGATTAATTAAAATAATTAAAATAATTAAAATGGATATTGATCGCAAAAAAAAGACCTAAAAGGGTATTTTGGGGACAAAGAAAACGAATAATTTTCAAAATTCAACGCTTACATTTAATTAAACGTCTTTTTCCTCCTTTCGCGTAAAAGCAAAGTGTTGAAATGAAACCGCTGGCGCTCGGGAATATTTGTTAACCCCACCTTCCACTGCCCCATTTCAATTTTTTTCTCAATTTCAGCGTTGAGGCCGAACTTTCTTAGAAAGAGAGGTGGAGGGGGTTGAGGAGAGGACTCCAGTTCTCTCTCTTTTGCTTAATCTTTTCTGAACAGACCAAATTCTTCTTTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGGGTATGGTGGTGGAGACTAGAGTGTTGACATGGAGGAGGGTGTTCAAGTCTCTCCAGGCTTTGGCAGCCCATGGTTTTCTTTTGTCCTTCACGCTTACGCTTGCTCTCAAGCTCGACCATCTCGTCTCTTACTCTTGGTGGTTCGTACCTCTCTCAATTCCTTATTCAACTTTTCTGTTTCTTTTGCAGAATATTAGTGGAACCCATTTGTAA

mRNA sequence

ATGGTGGTGGAGACTAGAGTGTTGACATGGAGGAGGGTGTTCAAGTCTCTCCAGGCTTTGGCAGCCCATGGTTTTCTTTTGTCCTTCACGCTTACGCTTGCTCTCAAGCTCGACCATCTCGTCTCTTACTCTTGGTGGTTCGTACCTCTCTCAATTCCTTATTCAACTTTTCTGTTTCTTTTGCAGAATATTAGTGGAACCCATTTAGTGTTGACATGGAGGAGGGTGTTCAAGTCTCTCCAGGCTTTGGCAGCCCATGGTTTTCTTTTGTCCTTCACGCTTACGCTTGCTCTCAAGCTCGACCATCTCGTCTCTTACTCTTGGTGGTTCGTACCTCTCTCAATTCCTTATTCAACTTTTCTGTTTCTTTTGCAGAATATTAGTGGAACCCATTTGTAA

Coding sequence (CDS)

ATGGTGGTGGAGACTAGAGTGTTGACATGGAGGAGGGTGTTCAAGTCTCTCCAGGCTTTGGCAGCCCATGGTTTTCTTTTGTCCTTCACGCTTACGCTTGCTCTCAAGCTCGACCATCTCGTCTCTTACTCTTGGTGGTTCGTACCTCTCTCAATTCCTTATTCAACTTTTCTGTTTCTTTTGCAGAATATTAGTGGAACCCATTTAGTGTTGACATGGAGGAGGGTGTTCAAGTCTCTCCAGGCTTTGGCAGCCCATGGTTTTCTTTTGTCCTTCACGCTTACGCTTGCTCTCAAGCTCGACCATCTCGTCTCTTACTCTTGGTGGTTCGTACCTCTCTCAATTCCTTATTCAACTTTTCTGTTTCTTTTGCAGAATATTAGTGGAACCCATTTGTAA

Protein sequence

MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFVPLSIPYSTFLFLLQNISGTHLVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFVPLSIPYSTFLFLLQNISGTHL

Homology

[Close]

BLAST of Cp4.1LG01g17680 vs. NCBI nr
Match: XP_023515362.1 (uncharacterized protein LOC111779463 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023515363.1 uncharacterized protein LOC111779463 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 91.3 bits (225), Expect = 1.93e-18
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1  MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFV 48
          MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWW V
Sbjct: 1  MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWVV 48

[Close]

BLAST of Cp4.1LG01g17680 vs. NCBI nr
Match: XP_022930119.1 (uncharacterized protein LOC111436604 [Cucurbita moschata])

HSP 1 Score: 91.3 bits (225), Expect = 1.93e-18
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1  MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFV 48
          MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWW V
Sbjct: 1  MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWVV 48

[Close]

BLAST of Cp4.1LG01g17680 vs. NCBI nr
Match: KAG6601754.1 (Kinesin-like protein KIN-7D, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032478.1 Kinesin-like protein KIN-7D, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.3 bits (225), Expect = 1.93e-18
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1  MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFV 48
          MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWW V
Sbjct: 1  MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWVV 48

[Close]

BLAST of Cp4.1LG01g17680 vs. NCBI nr
Match: XP_022973618.1 (uncharacterized protein LOC111472200 [Cucurbita maxima])

HSP 1 Score: 89.7 bits (221), Expect = 6.84e-18
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1  MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFV 48
          MVVETRVLTWRRVFKSLQALAAHGFL SFTLTLALKLDHLVSYSWW V
Sbjct: 1  MVVETRVLTWRRVFKSLQALAAHGFLFSFTLTLALKLDHLVSYSWWVV 48

[Close]

BLAST of Cp4.1LG01g17680 vs. NCBI nr
Match: XP_022157058.1 (uncharacterized protein LOC111023869 isoform X3 [Momordica charantia])

HSP 1 Score: 80.5 bits (197), Expect = 1.01e-14
Identity = 42/53 (79.25%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1  MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFVPLSIP 53
          MVVETRVLTWRR FKSLQALAAHGFLLSFTL +ALKLD  VSYSWW     +P
Sbjct: 1  MVVETRVLTWRRGFKSLQALAAHGFLLSFTLLVALKLDQAVSYSWWMCKALLP 53

[Close]

BLAST of Cp4.1LG01g17680 vs. ExPASy TrEMBL
Match: A0A6J1EQP2 (uncharacterized protein LOC111436604 OS=Cucurbita moschata OX=3662 GN=LOC111436604 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.34e-19
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1  MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFV 48
          MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWW V
Sbjct: 1  MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWVV 48

[Close]

BLAST of Cp4.1LG01g17680 vs. ExPASy TrEMBL
Match: A0A6J1IDN8 (uncharacterized protein LOC111472200 OS=Cucurbita maxima OX=3661 GN=LOC111472200 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.31e-18
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1  MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFV 48
          MVVETRVLTWRRVFKSLQALAAHGFL SFTLTLALKLDHLVSYSWW V
Sbjct: 1  MVVETRVLTWRRVFKSLQALAAHGFLFSFTLTLALKLDHLVSYSWWVV 48

[Close]

BLAST of Cp4.1LG01g17680 vs. ExPASy TrEMBL
Match: A0A6J1DSE2 (uncharacterized protein LOC111023869 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111023869 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.90e-15
Identity = 42/53 (79.25%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1  MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFVPLSIP 53
          MVVETRVLTWRR FKSLQALAAHGFLLSFTL +ALKLD  VSYSWW     +P
Sbjct: 1  MVVETRVLTWRRGFKSLQALAAHGFLLSFTLLVALKLDQAVSYSWWMCKALLP 53

[Close]

BLAST of Cp4.1LG01g17680 vs. ExPASy TrEMBL
Match: A0A6J1DTJ9 (uncharacterized protein LOC111023869 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023869 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.30e-15
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 1  MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFV 48
          MVVETRVLTWRR FKSLQALAAHGFLLSFTL +ALKLD  VSYSWW V
Sbjct: 1  MVVETRVLTWRRGFKSLQALAAHGFLLSFTLLVALKLDQAVSYSWWIV 48

[Close]

BLAST of Cp4.1LG01g17680 vs. ExPASy TrEMBL
Match: A0A6J1DWU2 (uncharacterized protein LOC111023869 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023869 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.30e-15
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 1  MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFV 48
          MVVETRVLTWRR FKSLQALAAHGFLLSFTL +ALKLD  VSYSWW V
Sbjct: 1  MVVETRVLTWRRGFKSLQALAAHGFLLSFTLLVALKLDQAVSYSWWIV 48

[Close]

BLAST of Cp4.1LG01g17680 vs. TAIR 10
Match: AT1G68820.1 (Transmembrane Fragile-X-F-associated protein )

HSP 1 Score: 67.8 bits (164), Expect = 7.5e-12
Identity = 49/120 (40.83%), Postives = 71/120 (59.17%), Query Frame = 0


Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFV--PLSIPYSTFL 60
           M+V+ RV++WRRV+KS QA +AH  L SFTL LALKLDH+VS+SWWFV  PL + ++   
Sbjct: 1   MLVQRRVMSWRRVWKSFQAASAHCLLFSFTLLLALKLDHVVSHSWWFVFAPLWLFHAVIA 60

Query: 61  ---FLLQNISGTHLVLTWRRVFKSLQALAAHGFLLSFTLTLALKLD--HLVSYSWWFVPL 114
              F L   S  H      R +    ++ A   L++F + L + L+  ++V     F+PL
Sbjct: 61  RGRFSLPAPSMPH-----DRHWAPFHSVMATPLLVAFEILLCVHLEDKYVVDLKIVFLPL 115

[Close]

BLAST of Cp4.1LG01g17680 vs. TAIR 10
Match: AT1G18470.1 (Transmembrane Fragile-X-F-associated protein )

HSP 1 Score: 53.1 bits (126), Expect = 1.9e-07
Identity = 45/117 (38.46%), Postives = 60/117 (51.28%), Query Frame = 0


Query: 8   LTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFVPLSIPYSTFLFLLQNISGT 67
           ++ RRV KS+QALAAH  L  FTL L LKLDH VS SWW V   +     +      S  
Sbjct: 1   MSCRRVLKSIQALAAHSLLFCFTLLLVLKLDHTVSSSWWMVFFPLWAFHAVVARGRFSLP 60

Query: 68  HLVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFVPLSIPYSTFLFLL 125
             V    R +    A+ A   L++F L L + L+   SY+ W   +S+  + FL LL
Sbjct: 61  APVAPRNRHWAPCHAVVATPLLVAFELLLCIYLES--SYARWPPAVSLKIA-FLPLL 114

[Close]

BLAST of Cp4.1LG01g17680 vs. TAIR 10
Match: AT1G18470.2 (Transmembrane Fragile-X-F-associated protein )

HSP 1 Score: 53.1 bits (126), Expect = 1.9e-07
Identity = 45/117 (38.46%), Postives = 60/117 (51.28%), Query Frame = 0


Query: 8   LTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFVPLSIPYSTFLFLLQNISGT 67
           ++ RRV KS+QALAAH  L  FTL L LKLDH VS SWW V   +     +      S  
Sbjct: 1   MSCRRVLKSIQALAAHSLLFCFTLLLVLKLDHTVSSSWWMVFFPLWAFHAVVARGRFSLP 60

Query: 68  HLVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFVPLSIPYSTFLFLL 125
             V    R +    A+ A   L++F L L + L+   SY+ W   +S+  + FL LL
Sbjct: 61  APVAPRNRHWAPCHAVVATPLLVAFELLLCIYLES--SYARWPPAVSLKIA-FLPLL 114

[Close]

BLAST of Cp4.1LG01g17680 vs. TAIR 10
Match: AT1G73950.1 (Transmembrane Fragile-X-F-associated protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-06
Identity = 39/110 (35.45%), Postives = 54/110 (49.09%), Query Frame = 0


Query: 12  RVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFVPLSIPYSTFLFLLQNISGTHLVL 71
           RV KS+QA  AH FL SFTL L LKLDH ++YSWW V L +     +      S    + 
Sbjct: 5   RVLKSVQASVAHCFLFSFTLALVLKLDHSITYSWWVVCLPLWAFHAVVARGRFSLPAPIA 64

Query: 72  TWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFVPLSIPYSTFL 122
              R +    A+ +   L++F L L + L+   + S   V L I +   L
Sbjct: 65  PRNRHWAPCHAIVSTPLLIAFELLLCVYLETAYADSPPAVSLKIVFLPLL 114

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g17680 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g17680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515362.1	1.93e-18	97.92	uncharacterized protein LOC111779463 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022930119.1	1.93e-18	97.92	uncharacterized protein LOC111436604 [Cucurbita moschata]	[more]
KAG6601754.1	1.93e-18	97.92	Kinesin-like protein KIN-7D, mitochondrial, partial [Cucurbita argyrosperma subs...	[more]
XP_022973618.1	6.84e-18	95.83	uncharacterized protein LOC111472200 [Cucurbita maxima]	[more]
XP_022157058.1	1.01e-14	79.25	uncharacterized protein LOC111023869 isoform X3 [Momordica charantia]	[more]

BLAST of Cp4.1LG01g17680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EQP2	9.34e-19	97.92	uncharacterized protein LOC111436604 OS=Cucurbita moschata OX=3662 GN=LOC1114366...	[more]
A0A6J1IDN8	3.31e-18	95.83	uncharacterized protein LOC111472200 OS=Cucurbita maxima OX=3661 GN=LOC111472200...	[more]
A0A6J1DSE2	4.90e-15	79.25	uncharacterized protein LOC111023869 isoform X3 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DTJ9	6.30e-15	87.50	uncharacterized protein LOC111023869 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DWU2	6.30e-15	87.50	uncharacterized protein LOC111023869 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Cp4.1LG01g17680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68820.1	7.5e-12	40.83	Transmembrane Fragile-X-F-associated protein	[more]
AT1G18470.1	1.9e-07	38.46	Transmembrane Fragile-X-F-associated protein	[more]
AT1G18470.2	1.9e-07	38.46	Transmembrane Fragile-X-F-associated protein	[more]
AT1G73950.1	1.2e-06	35.45	Transmembrane Fragile-X-F-associated protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46859:SF5	BNAA02G14020D PROTEIN	coord: 69..113
None	No IPR available	PANTHER	PTHR46859	TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN	coord: 69..113
None	No IPR available	PANTHER	PTHR46859	TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN	coord: 2..50
None	No IPR available	PANTHER	PTHR46859:SF5	BNAA02G14020D PROTEIN	coord: 2..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g17680.1	Cp4.1LG01g17680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane