Cp4.1LG01g17540 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g17540
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG01: 13592108 .. 13598043 (+)
RNA-Seq Expression	Cp4.1LG01g17540
Synteny	Cp4.1LG01g17540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGATTCAACGCAAACATCACATTTGTGTGTTATGACCGTCAAAAATGGAGAGCAGTAGTCCTAATCTGAAGATTCTATGCCGAGAACAGCAGTGGGTTTCGTGAATCTTGTTGACCGAAGTGGCCGAAGAATCGTAAGTGATTTCCGTTCCTTTTAAATTCTCTCTTCTTAATCAAACGAACAATCTTTGGTTGAAACTCGTAGTGATTAATGTAGGAGTACGAGTTATGAGTTGTAAATTACTTCCCCTTCCAACCTCTCTGAACAGCCTTATCAATTCAGGGCGGACCTTGAAACATGCCACTCAAATTCATTCCCATCTCATCACCACTGCCTTCCTTTCCCTCCCTTTCCTCTTCAATAACCTCCTCAACTTGTACGCCAAATCTGGTTCTCTCGACCAAACCTTGTTGTTCTTCTCCTCAACCCCACATGACTCCAAGAACGTTGTCTCTTGGACTTCTCTTATCACCCAATTTTCCCGTTCTAAAAGACCCTTTCACGCCTTGGCTTTCTTTAACCATATGAGGTGTTCTGGGGTTTATCCCAATCACTACACCTTCTCTGCTGTCTTATCTGCTTGCACTGACACTATGGCTTCTGTTCATGGGGATCAGATGCATTCTTTGATTTGGAAACACGGGTTCCATGCTGACGTCTTTGTTGCCAGTGCGTTACTTGACATGTATGCCAAGTGTTGTGATATGTGCAGGGCCGAGAAGGTGTTCGAGGAAATGCCCCTGAGAAACCTAGTGTCTTGGAACTCTATGATTGTGGGATTCTTGCAGAACAAGCTATATGATCGGGCCATTCTCTTCTTTAAGACGCTTCTACTCGAGAGTCTAACTGCTGTTGATGAGGTAAGCTTTTCTAGTGCTTTGAGTGCTTGTGCCAATGTTGGTAACTGGGAGTTTGGGAAACAAGTTCATGGAGTTGCTCTCAAGCTTGGTGTCAGGAATTTGGTTTATGTAAATAACTCGCTGATTGACATGTATAGTAAGTGTGGCTTGTTTGACGACGTTGTGAAGTTGTTTTCAAACATTGGAGCTAGAGATGTTGTTACTTGGAACATTATGATCATGGCATGCGTTTATAATAACAATTATGAAGATGCCTGCAATAATTTTTGGATGATGAGGAGGGAAGGTTTAATACCTGATGAAGCGTCATACTCCTCTGTTCTTCATTCTTGTGCAAATCTTGCAGCATTATATCAGGGAGCACTCATCCATAATCAGATCATAAAATCTGGATTCGTGAAGAATTTGTGTGTTGCAAGCTCTTTGGTCACGATGTATGCAAAGTGCGGCAGCTTGGTAGATGCTTTTCAGATATTTGAAGAGACTGTGGACCGTAATGTGGTTTGTTGGACAGCCATAATTGCAGCTTGTCAACAACACGGTCATGCTAACCAGGTCGTTCAGTTATTCGAGCAAATGTTGAGAGAGGGGATTAAACCTGACTATATTACTTTTGTTTCTGTTCTCTCTGCTTGCAGCCACACTGGTCGGGTTGAAGAAGGGTTCTTCTACTTTAATTCAATGACTAAAGTGCATGGTATTTACCCTGGATATGAGCATTATGCGTGTATAGTCGACTTGCTTGGCCGTGCTGGGCAGTTGGATAGAGCTAAGAGGTTTATAGAACTGATGCCTATCAAACCAGACGCCTCTGTATGGGGTGCTCTGCTTAGTGCTTGCAGGAATCATAGCAACCTTGAAATGGGCAAGGAAGTGGCTCAGGAACTTTTTGAATTGGAACCAGATAATCCTGGAAATTATGTGCTGCTTTGTAACATCTTGACACGTAATGGGATGTTACGCGAGGCCGACGAGGTTAGAAGAAAGATGGAAGCCATTGGAGTGAGGAAGGAACCAGGATGCAGCTGGATTGACATAAAGAATTCAACATATGTGTTCACAGTGCATGATAAGTCGCATGAGAAAACGCAGGAGATTTACGAGATGTTGGAGAAGGTAAAGGAGTTAGTAAAGAAGAAAGGGTATGTGGCTGAAACTGAATTTGCAATAAACATGGCAGAAGCATACAAGGAGCAGAGTTTGTGGTACCATAGCGAGAAACTAGCTCTTGCACTTGGGCTGCTCAGCCTTCCCGCCGGTGCTCCAATTAGGATAAAAAAGAACTTAAGAACTTGTGGAGACTGTCATACCGTAATGAAGTTTGCATCAGAAGTTTTTGGGCGAGAGATTATAGTAAGAGACATAAGCAGATTTCATCATTTCACCAATGGCATTTGTTCTTGTGGAGATTACTGGTGATTGATTGGAGGTTGATGATCCGGTGGATCACCCTTAGGAGCCCATTGAGCTAAAACTAGCTCATGAAACACCAGTACAACAAATATAACTTTTGAAGTACGGTCTAGAGTTGCAAGATTAATTTAGTTAGAGTTGGTAATATGGATCATCAAGTTTTTGTTCATCTTGATTTGTTCTTCTATTCATCATTGTTACGTTTCAATTGAGGCAACTGTGATTTATCTGATATCATAATGCTTGCAGTGTGAACGCAGGGATACAAATTGGACACTGTTGAATACTCAAATGTGTTCCCCATCAGAAATTCACTGCAGCAAGGCAATTTAAACACAATGGGGAGCTAACTTTCAACATTTGATTAGGTATTATACCTTCCACCTTCAATACTACACCTTCATGTATGCTAACTCATGAAACATTGAGTTTGTCCCTTAATCTACAAGTCATCAAAGATTATCATCAACTATAAGTGCTCACATAGCCCTTGTGTAATAGCTTGAAACTCCACATTTTATATTTTATATTTTATATTTTATATTTTTTACTTCATCATATCACTAAATTACCTCTAAGATGAGTATATACCTTGTCGTAGATCTTTATCTACTATTAATCCAACATAGTCAATGTCCGTGTAAGCTTCCAATGCAAGGGGATGGTTTTTGTTTAAATAAGGCTCCTTTTCCTGAAGTCTCTTGCAAGTAATGTAATACTCTATATGTTGTCTGAAGATGACATCTTCGGTAATGCATAAATTGACTAATTACACTTACGGAGTATGCTATGTCATGTCGAATGTGAGTTAGATATACAAGTCTCCCCAATAGCCTCTAGTAAAACTCTGTTCATTGTAAGTTCTTTTGACACTCCCCATCTTTGATGTGGATCCATTTCCATTGCATGATAAGATAAGGAATCACTACAAGGGGAGTAAGATTTGGATTACCTTGTTGATCGAAGATCTTAAGGCAAGAACACTTGTTTGAGATTCGAATCACTCCACAAGCAAGATCGATCATGTCTAGCTTGAATGATTCTTGTTGATCAAATATCTCAGCGCAAGACCACTTGTTTGAGATTCGAATCACTCCACAAGCAAGATTGATCATGTCGAGCTTGAATGATTCTACATGCAACCTAAACTACATAGAATTGCAAAGAAACTTAGCCATTGGCTAAAGAAAAGCACAAATGCTTCTTTTACTACATTTTCCAACTACCTTACAAATACAACATACATGGCTTTATATAGTCTCAAAATGAAACTATTAAAGACATTCCAAGAGTTGTAACATTCATACGTAATGACCATAATTAACCATTATGTAATTGTAACCTAAAGTAAATAAAAACTCTTAAACTACGTTAATGAAATACAATAACTCTAAATTGTAATCCACCCAAAATTTATCATATGAAACTTTATTCTTCTTCAATGTGGCATGAATTGAAATATCTTTTGATAATTTCAACAATATTTTCTTCACATCTTCATTGAAGCATATTGTATGATTTATGTCTCATTCTGCTTTTTCTTATTTCCATTCATAAATTTGTTACTTATTTCTATTGTGATATGCAAATGTCCTAAGTTGAGTATGCATCTTCCTTGTTGAGAAAGTACTTTAGCCTTCTAGGTTATTTGATCTCAAATTCTCTCATTAATTTCCTTCTAAGTTCAATCTTTTCTTCTTTATTATCTCCCGTAACTATGATATCATCTACATACACTAGAAGTATTGTAACTCTTCTTGGTTTTGAGTGCTTGATAGATAGAGTAATCTCCTTAACTCTACATATACTCATCGTCTTTCATTACCTTCGTGAATCTTCATAACCACACACTTAGGTGATTGTTTTAATTCATACCGGACTTAGACTGCACACTTTACCTCTTGAGCTTGTTAGGATCGCACAACAACGCACACACTCGATCTAGATGAACACAAAAAATAGGATAGAGAAAATGCAAGGAGAATATTGGCTAAAGGTTTATATTGATGACTTCAGACATGTAGAGTAAGAGTGTAACGCCTCAAATCCACAGCTAGCCGATATTGTTCTCTTTGGGCTGCCCCTCAAGGCTTTAAAACGCGTATGCTAGGGGAAGGTTTCCACACAGTTGGGGAGGAGAACAAACCACCCTTTGGGGTCCAGCGTCCTCGCTGGCATCTTTCCTTCCTCCAATCGATGTGGGACCGCCCCCAAATCCACCCCTCTCTGGGGCCCAGCGTCCTTACTGGCACACCGCCTCTTCGGGGAACAGCGAGAAGGCTGACACATCGTCTGGTGTCTGGCTCTGATACCATTTGTAACGTCCCAAATCCACCGCTAGTAGATATTATCCTCTTTGAGCTTTCCCTTTCGGGCTTTCCCTCAAGGCTTTAAAACGTGTCGGGCTTTCCCTCAAGGCTTTAAAACGTGTCGGGCTTTCCCTCAAGGCTTTAAAACGTGTCGGGCTTTCCCTCAAGGCTTTAAAACGTGTCTGCTAGGGGAAGGTTTTCACACCCTTATAAAGGGTGGTTTGTTCTCCTTCCTCCAATAGAGTGCCAGAGAGGACGCTGGGGTCCGAAGGGGGGTGGATTGTGATGTCCCACATTGGTTGGGAAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTCCCCTAGCAGACGCGTTTTAAAGCCTTGAGTGGAAGCCCGAAAGGGAAAACCCAAAGAGGACAATATCTGTTAGCGGTGGATCTGGGTCGTTACAAAGAGAGAATACAGAGAATACCTAAAGTACATTTAGGGATATATATGGGTTTAGCTTACTATATATAACTTTACTAAATATAACCATCTACCTATATAATTATTTACCATATATAGCTTTACCTTTTTGCTATTTACTATTTATGGCAATTTACTATATATCATTTACCAAATATAGTTTTACTATGTATTATCGACTAAGCTATAAATAAGCAGCAGACTCCATAGCTTACAAATCCTAAAGGAATGCACTCATAGCTTTCCTCGTCTAGATCACTGCAAAAGAACACATTCTTACATGTGTAAGAGCTGCCAATTTAAGTTGGCAACTAAAGATAGCAATATACTTGTAGTGTTCATCTTTGTTACTAAGGCAAATGTCTCCCAGTAACTATGTCGTCAAGTTTGAATAGATCCCTTAGCTACTAACCTTACATTAAGAGAGGCAAGGTTATTCAGTGTGTCCAAAGGGAGGCTTTAGTGAGAACAATTTACACTCGGTGAATGTCACATCAATTGAGATGTAAGACTTCCTATATTTAAGATTGTAACATTTCGTACCCCTTTTTGGTAGAAGAATATCCTAAAAAGACACATTTTATTGCTCTTTGAGTGTTGTTCAAGGCTAGGCACCAGAACATGGGGGTGTGAGGTCATTTGATATTAGAAAGTGAAGATAAAATTGGTTGCACACTTTTACTTGGAAAGATGCACTAATACCATCTTTTACTTCGATGACCTTCTTTCCTTGTTTCTTGTCTTCTTCAGTACCCAATTTTCAATCATTGGGTTCTTGACCTCTTCTTGACTGTACACCAACACCTGTCACAGAACAAGAATAGCATGCTCTTTCACACACACAGAGGTGTAATAATGAAAACTAAGAAGCGCCTGAAGAAACTTAAGTAG

mRNA sequence

ATGGATTCTATGCCGAGAACAGCAGTGGGTTTCGTGAATCTTGTTGACCGAAGTGGCCGAAGAATCGTAAGAGTACGAGTTATGAGTTGTAAATTACTTCCCCTTCCAACCTCTCTGAACAGCCTTATCAATTCAGGGCGGACCTTGAAACATGCCACTCAAATTCATTCCCATCTCATCACCACTGCCTTCCTTTCCCTCCCTTTCCTCTTCAATAACCTCCTCAACTTGTACGCCAAATCTGGTTCTCTCGACCAAACCTTGTTGTTCTTCTCCTCAACCCCACATGACTCCAAGAACGTTGTCTCTTGGACTTCTCTTATCACCCAATTTTCCCGTTCTAAAAGACCCTTTCACGCCTTGGCTTTCTTTAACCATATGAGTGCTTTGAGTGCTTGTGCCAATGTTGGTAACTGGGAGTTTGGGAAACAAGTTCATGGAGTTGCTCTCAAGCTTGGTGTCAGGAATTTGGTTTATGTAAATAACTCGCTGATTGACATGTATAGTAAGTGTGGCTTGTTTGACGACGTTGTGAAGTTGTTTTCAAACATTGGAGCTAGAGATGTTGTTACTTGGAACATTATGATCATGGCATGCGTTTATAATAACAATTATGAAGATGCCTGCAATAATTTTTGGATGATGAGGAGGGAAGGTTTAATACCTGATGAAGCGTCATACTCCTCTTACCCAATTTTCAATCATTGGGTTCTTGACCTCTTCTTGACTGTACACCAACACCTGTCACAGAACAAGAATAGCATGCTCTTTCACACACACAGAGGTGTAATAATGAAAACTAAGAAGCGCCTGAAGAAACTTAAGTAG

Coding sequence (CDS)

ATGGATTCTATGCCGAGAACAGCAGTGGGTTTCGTGAATCTTGTTGACCGAAGTGGCCGAAGAATCGTAAGAGTACGAGTTATGAGTTGTAAATTACTTCCCCTTCCAACCTCTCTGAACAGCCTTATCAATTCAGGGCGGACCTTGAAACATGCCACTCAAATTCATTCCCATCTCATCACCACTGCCTTCCTTTCCCTCCCTTTCCTCTTCAATAACCTCCTCAACTTGTACGCCAAATCTGGTTCTCTCGACCAAACCTTGTTGTTCTTCTCCTCAACCCCACATGACTCCAAGAACGTTGTCTCTTGGACTTCTCTTATCACCCAATTTTCCCGTTCTAAAAGACCCTTTCACGCCTTGGCTTTCTTTAACCATATGAGTGCTTTGAGTGCTTGTGCCAATGTTGGTAACTGGGAGTTTGGGAAACAAGTTCATGGAGTTGCTCTCAAGCTTGGTGTCAGGAATTTGGTTTATGTAAATAACTCGCTGATTGACATGTATAGTAAGTGTGGCTTGTTTGACGACGTTGTGAAGTTGTTTTCAAACATTGGAGCTAGAGATGTTGTTACTTGGAACATTATGATCATGGCATGCGTTTATAATAACAATTATGAAGATGCCTGCAATAATTTTTGGATGATGAGGAGGGAAGGTTTAATACCTGATGAAGCGTCATACTCCTCTTACCCAATTTTCAATCATTGGGTTCTTGACCTCTTCTTGACTGTACACCAACACCTGTCACAGAACAAGAATAGCATGCTCTTTCACACACACAGAGGTGTAATAATGAAAACTAAGAAGCGCCTGAAGAAACTTAAGTAG

Protein sequence

MDSMPRTAVGFVNLVDRSGRRIVRVRVMSCKLLPLPTSLNSLINSGRTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTPHDSKNVVSWTSLITQFSRSKRPFHALAFFNHMSALSACANVGNWEFGKQVHGVALKLGVRNLVYVNNSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYNNNYEDACNNFWMMRREGLIPDEASYSSYPIFNHWVLDLFLTVHQHLSQNKNSMLFHTHRGVIMKTKKRLKKLK

Homology

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BLAST of Cp4.1LG01g17540 vs. ExPASy Swiss-Prot
Match: Q3E6Q1 (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.3e-22
Identity = 65/200 (32.50%), Postives = 103/200 (51.50%), Query Frame = 0


Query: 43  INSGRTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTPHDSKNVV 102
           +++ R +    +IH + + + F SL  +   L+++YAK GSL+     F       +NVV
Sbjct: 246 VSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGML--ERNVV 305

Query: 103 SWTSLITQFSRSKRPFHALAFFNH-------------MSALSACANVGNWEFGKQVHGVA 162
           SW S+I  + +++ P  A+  F               M AL ACA++G+ E G+ +H ++
Sbjct: 306 SWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLS 365

Query: 163 LKLGVRNLVYVNNSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYNNNYEDAC 222
           ++LG+   V V NSLI MY KC   D    +F  + +R +V+WN MI+    N    DA 
Sbjct: 366 VELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDAL 425

Query: 223 NNFWMMRREGLIPDEASYSS 230
           N F  MR   + PD  +Y S
Sbjct: 426 NYFSQMRSRTVKPDTFTYVS 443

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BLAST of Cp4.1LG01g17540 vs. ExPASy Swiss-Prot
Match: Q9LIQ7 (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H87 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.6e-22
Identity = 63/188 (33.51%), Postives = 99/188 (52.66%), Query Frame = 0


Query: 55  IHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTPHDSKNVVSWTSLITQFSRS 114
           +H+H++ + F     + N LLN+YAK GSL++    F   P   ++ V+WT+LI+ +S+ 
Sbjct: 82  VHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMP--QRDFVTWTTLISGYSQH 141

Query: 115 KRPFHALAFFNHM-------------SALSACANVGNWEFGKQVHGVALKLGVRNLVYVN 174
            RP  AL FFN M             S + A A       G Q+HG  +K G  + V+V 
Sbjct: 142 DRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVG 201

Query: 175 NSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYNNNYEDACNNFWMMRREGLI 230
           ++L+D+Y++ GL DD   +F  + +R+ V+WN +I      +  E A   F  M R+G  
Sbjct: 202 SALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFR 261

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BLAST of Cp4.1LG01g17540 vs. ExPASy Swiss-Prot
Match: Q9SX45 (Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E42 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.8e-20
Identity = 69/226 (30.53%), Postives = 110/226 (48.67%), Query Frame = 0


Query: 54  QIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTPHDSKNVVSWTSLITQFSR 113
           Q H+H++     S PF+ N+L++ Y+ SG  D     F     + K+VV+WT++I  F R
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGA--EDKDVVTWTAMIDGFVR 183

Query: 114 SKRPFHALAFFNHM-------------SALSACANVGNWEFGKQVHGVALKLG-VRNLVY 173
           +     A+ +F  M             S L A   V +  FG+ VHG+ L+ G V+  V+
Sbjct: 184 NGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVF 243

Query: 174 VNNSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYNNNYEDACNNFWMMRREG 233
           + +SL+DMY KC  +DD  K+F  + +R+VVTW  +I   V +  ++     F  M +  
Sbjct: 244 IGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSD 303

Query: 234 LIPDEASYSSYPIFNHWVLDLFLTVHQHLSQNKNSMLFHTHRGVIM 266
           + P+E + SS       V  L      H    KNS+  +T  G  +
Sbjct: 304 VAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTL 347

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BLAST of Cp4.1LG01g17540 vs. ExPASy Swiss-Prot
Match: A8MQA3 (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 3.1e-20
Identity = 60/187 (32.09%), Postives = 101/187 (54.01%), Query Frame = 0


Query: 55  IHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTPHDSKNVVSWTSLITQFSRS 114
           IHS +I + F SL ++ N+LL+LYA  G +      F   P   K++V+W S+I  F+ +
Sbjct: 143 IHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMP--EKDLVAWNSVINGFAEN 202

Query: 115 KRPFHALAFFNHM-------------SALSACANVGNWEFGKQVHGVALKLGVRNLVYVN 174
            +P  ALA +  M             S LSACA +G    GK+VH   +K+G+   ++ +
Sbjct: 203 GKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSS 262

Query: 175 NSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYNNNYEDACNNF-WMMRREGL 228
           N L+D+Y++CG  ++   LF  +  ++ V+W  +I+    N   ++A   F +M   EGL
Sbjct: 263 NVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGL 322

[Close]

BLAST of Cp4.1LG01g17540 vs. ExPASy Swiss-Prot
Match: O23169 (Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H5 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.2e-20
Identity = 53/194 (27.32%), Postives = 97/194 (50.00%), Query Frame = 0


Query: 47  RTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTPHDSKNVVSWTS 106
           + ++   +IH H++     S   L+++L+++Y K G +D+    F       K+VVSWTS
Sbjct: 232 KCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIV--EKDVVSWTS 291

Query: 107 LITQFSRSKRPFHALAFFNHM-------------SALSACANVGNWEFGKQVHGVALKLG 166
           +I ++ +S R     + F+ +               L+ACA++   E GKQVHG   ++G
Sbjct: 292 MIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVG 351

Query: 167 VRNLVYVNNSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYNNNYEDACNNFW 226
                + ++SL+DMY+KCG  +    +       D+V+W  +I  C  N   ++A   F 
Sbjct: 352 FDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFD 411

Query: 227 MMRREGLIPDEASY 228
           ++ + G  PD  ++
Sbjct: 412 LLLKSGTKPDHVTF 423

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BLAST of Cp4.1LG01g17540 vs. NCBI nr
Match: XP_023538639.1 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023538645.1 pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 363 bits (931), Expect = 7.11e-118
Identity = 202/317 (63.72%), Postives = 202/317 (63.72%), Query Frame = 0


Query: 28  MSCKLLPLPTSLNSLINSGRTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQT 87
           MSCKLLPLPTSLNSLINSGRTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQT
Sbjct: 1   MSCKLLPLPTSLNSLINSGRTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQT 60

Query: 88  LLFFSSTPHDSKNVVSWTSLITQFSRSKRPFHALAFFNHM-------------------- 147
           LLFFSSTPHDSKNVVSWTSLITQFSRSKRPFHALAFFNHM                    
Sbjct: 61  LLFFSSTPHDSKNVVSWTSLITQFSRSKRPFHALAFFNHMRCSGVYPNHYTFSAVLSACT 120

Query: 148 ------------------------------------------------------------ 207
                                                                       
Sbjct: 121 DTMASVHGDQMHSLIWKHGFHADVFVASALLDMYAKCCDMCRAEKVFEEMPLRNLVSWNS 180

Query: 208 -----------------------------------SALSACANVGNWEFGKQVHGVALKL 229
                                              SALSACANVGNWEFGKQVHGVALKL
Sbjct: 181 MIVGFLQNKLYDRAILFFKTLLLESLTAVDEVSFSSALSACANVGNWEFGKQVHGVALKL 240

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BLAST of Cp4.1LG01g17540 vs. NCBI nr
Match: KAG6590519.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 358 bits (918), Expect = 6.32e-116
Identity = 199/317 (62.78%), Postives = 200/317 (63.09%), Query Frame = 0


Query: 28  MSCKLLPLPTSLNSLINSGRTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQT 87
           MSCKLLPLPTSLNSLINSGRTLKHATQIH+HLITTAFLSLPFLFNNLLNLYAKS SLDQT
Sbjct: 1   MSCKLLPLPTSLNSLINSGRTLKHATQIHAHLITTAFLSLPFLFNNLLNLYAKSASLDQT 60

Query: 88  LLFFSSTPHDSKNVVSWTSLITQFSRSKRPFHALAFFNHM-------------------- 147
           LLFFSSTPHDSKNVVSWTSLITQFSRSKRPFHAL FFNHM                    
Sbjct: 61  LLFFSSTPHDSKNVVSWTSLITQFSRSKRPFHALTFFNHMRCSRVYPNHYTFSAVLSACT 120

Query: 148 ------------------------------------------------------------ 207
                                                                       
Sbjct: 121 DTMASVHGDQMHSLIWKHGFHADVFVASALLDMYAKCCDMCRAEKVFEEMPLRNLVSWNS 180

Query: 208 -----------------------------------SALSACANVGNWEFGKQVHGVALKL 229
                                              SALSACANVGNWEFGKQVHGVALKL
Sbjct: 181 MIVGFLQNKLYDRAILFFKTLLLESLTAVDEVSFSSALSACANVGNWEFGKQVHGVALKL 240

[Close]

BLAST of Cp4.1LG01g17540 vs. NCBI nr
Match: XP_022968835.1 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isoform X1 [Cucurbita maxima] >XP_022968836.1 pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 352 bits (904), Expect = 7.90e-114
Identity = 197/317 (62.15%), Postives = 197/317 (62.15%), Query Frame = 0


Query: 28  MSCKLLPLPTSLNSLINSGRTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQT 87
           MSCKLLPLPTSLNSLINSGRTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGS D T
Sbjct: 1   MSCKLLPLPTSLNSLINSGRTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSFDHT 60

Query: 88  LLFFSSTPHDSKNVVSWTSLITQFSRSKRPFHALAFFNHM-------------------- 147
           LL FSSTPHDSKNVVSWTSLITQFSRSKRPFHAL FFN M                    
Sbjct: 61  LLLFSSTPHDSKNVVSWTSLITQFSRSKRPFHALTFFNRMRCSGVFPNHYTFSAVLSAST 120

Query: 148 ------------------------------------------------------------ 207
                                                                       
Sbjct: 121 DTMASVHGDQMHSLIWKHGFHADVFVASALVDMYAKCCDMCRAEKVFEEMPLRNLVSWNS 180

Query: 208 -----------------------------------SALSACANVGNWEFGKQVHGVALKL 229
                                              SALSACANVGNWEFGKQVHGVALKL
Sbjct: 181 MIVGFLQNKLYDRAILFFKTLLLENLTAVDEVSFSSALSACANVGNWEFGKQVHGVALKL 240

[Close]

BLAST of Cp4.1LG01g17540 vs. NCBI nr
Match: XP_022961446.1 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 352 bits (902), Expect = 1.58e-113
Identity = 196/317 (61.83%), Postives = 197/317 (62.15%), Query Frame = 0


Query: 28  MSCKLLPLPTSLNSLINSGRTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQT 87
           MSCKLLPLPTSLNSLINSGRTLKHATQIH+HLITTAFLSLPFLFNNLLNLYAKS SLD T
Sbjct: 1   MSCKLLPLPTSLNSLINSGRTLKHATQIHAHLITTAFLSLPFLFNNLLNLYAKSASLDHT 60

Query: 88  LLFFSSTPHDSKNVVSWTSLITQFSRSKRPFHALAFFNHM-------------------- 147
           LL FSS PHDSKNVVSWTSLITQFSRSKRPFHAL FFNHM                    
Sbjct: 61  LLLFSSAPHDSKNVVSWTSLITQFSRSKRPFHALTFFNHMRCSGVYPNHYTFSAVLSACT 120

Query: 148 ------------------------------------------------------------ 207
                                                                       
Sbjct: 121 DTMASVHGDQMHSLIWKHGFHADVFVASALLDMYAKCCDMCRAEKVFEEMPLRNLVSWNS 180

Query: 208 -----------------------------------SALSACANVGNWEFGKQVHGVALKL 229
                                              SALSACANVGNWEFGKQVHGVALKL
Sbjct: 181 MIVGFLQNKLYDRAILFFKTLLLESLTAVDEVSFSSALSACANVGNWEFGKQVHGVALKL 240

[Close]

BLAST of Cp4.1LG01g17540 vs. NCBI nr
Match: KAG7024054.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 352 bits (902), Expect = 1.58e-113
Identity = 196/317 (61.83%), Postives = 197/317 (62.15%), Query Frame = 0


Query: 28  MSCKLLPLPTSLNSLINSGRTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQT 87
           MSCKLLPLPTSLNSLINSGRTLKHATQIH+HLITTAFLSLPFLFNNLLNLYAKS SLD T
Sbjct: 1   MSCKLLPLPTSLNSLINSGRTLKHATQIHAHLITTAFLSLPFLFNNLLNLYAKSASLDHT 60

Query: 88  LLFFSSTPHDSKNVVSWTSLITQFSRSKRPFHALAFFNHM-------------------- 147
           LL FSS PHDSKNVVSWTSLITQFSRSKRPFHAL FFNHM                    
Sbjct: 61  LLLFSSAPHDSKNVVSWTSLITQFSRSKRPFHALTFFNHMRCSGVYPNHYTFSAVLSACT 120

Query: 148 ------------------------------------------------------------ 207
                                                                       
Sbjct: 121 DTMASVHGDQMHSLIWKHGFHADVFVASALLDMYAKCCDMCRAEKVFEEMPLRNLVSWNS 180

Query: 208 -----------------------------------SALSACANVGNWEFGKQVHGVALKL 229
                                              SALSACANVGNWEFGKQVHGVALKL
Sbjct: 181 MIVGFLQNKLYDRAILFFKTLLLESLTAVDEVSFSSALSACANVGNWEFGKQVHGVALKL 240

[Close]

BLAST of Cp4.1LG01g17540 vs. ExPASy TrEMBL
Match: A0A6J1HVZ6 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467973 PE=3 SV=1)

HSP 1 Score: 352 bits (904), Expect = 3.83e-114
Identity = 197/317 (62.15%), Postives = 197/317 (62.15%), Query Frame = 0


Query: 28  MSCKLLPLPTSLNSLINSGRTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQT 87
           MSCKLLPLPTSLNSLINSGRTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGS D T
Sbjct: 1   MSCKLLPLPTSLNSLINSGRTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSFDHT 60

Query: 88  LLFFSSTPHDSKNVVSWTSLITQFSRSKRPFHALAFFNHM-------------------- 147
           LL FSSTPHDSKNVVSWTSLITQFSRSKRPFHAL FFN M                    
Sbjct: 61  LLLFSSTPHDSKNVVSWTSLITQFSRSKRPFHALTFFNRMRCSGVFPNHYTFSAVLSAST 120

Query: 148 ------------------------------------------------------------ 207
                                                                       
Sbjct: 121 DTMASVHGDQMHSLIWKHGFHADVFVASALVDMYAKCCDMCRAEKVFEEMPLRNLVSWNS 180

Query: 208 -----------------------------------SALSACANVGNWEFGKQVHGVALKL 229
                                              SALSACANVGNWEFGKQVHGVALKL
Sbjct: 181 MIVGFLQNKLYDRAILFFKTLLLENLTAVDEVSFSSALSACANVGNWEFGKQVHGVALKL 240

[Close]

BLAST of Cp4.1LG01g17540 vs. ExPASy TrEMBL
Match: A0A6J1HAE0 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462026 PE=3 SV=1)

HSP 1 Score: 352 bits (902), Expect = 7.63e-114
Identity = 196/317 (61.83%), Postives = 197/317 (62.15%), Query Frame = 0


Query: 28  MSCKLLPLPTSLNSLINSGRTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQT 87
           MSCKLLPLPTSLNSLINSGRTLKHATQIH+HLITTAFLSLPFLFNNLLNLYAKS SLD T
Sbjct: 1   MSCKLLPLPTSLNSLINSGRTLKHATQIHAHLITTAFLSLPFLFNNLLNLYAKSASLDHT 60

Query: 88  LLFFSSTPHDSKNVVSWTSLITQFSRSKRPFHALAFFNHM-------------------- 147
           LL FSS PHDSKNVVSWTSLITQFSRSKRPFHAL FFNHM                    
Sbjct: 61  LLLFSSAPHDSKNVVSWTSLITQFSRSKRPFHALTFFNHMRCSGVYPNHYTFSAVLSACT 120

Query: 148 ------------------------------------------------------------ 207
                                                                       
Sbjct: 121 DTMASVHGDQMHSLIWKHGFHADVFVASALLDMYAKCCDMCRAEKVFEEMPLRNLVSWNS 180

Query: 208 -----------------------------------SALSACANVGNWEFGKQVHGVALKL 229
                                              SALSACANVGNWEFGKQVHGVALKL
Sbjct: 181 MIVGFLQNKLYDRAILFFKTLLLESLTAVDEVSFSSALSACANVGNWEFGKQVHGVALKL 240

[Close]

BLAST of Cp4.1LG01g17540 vs. ExPASy TrEMBL
Match: A0A0A0LVV0 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G560780 PE=3 SV=1)

HSP 1 Score: 292 bits (748), Expect = 4.16e-91
Identity = 161/264 (60.98%), Postives = 169/264 (64.02%), Query Frame = 0


Query: 37  TSLNSLINSGRTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTPH 96
           TSLNSL+N  RT KHATQIHS LITTA LSLPFLFNNLLNLYAK GS+DQTLL FSS P 
Sbjct: 31  TSLNSLLNCSRTSKHATQIHSQLITTALLSLPFLFNNLLNLYAKCGSVDQTLLLFSSAPD 90

Query: 97  DSKNVVSWTSLITQFSRSKRPFHALAFFNHM----------------------------- 156
           DSKNVVSWTSLITQ +R KRPF AL FFNHM                             
Sbjct: 91  DSKNVVSWTSLITQLTRFKRPFKALTFFNHMRRSGVYPNHYTFSAVLSACTDTTASVHGE 150

Query: 157 ------------------------------------------SALSACANVGNWEFGKQV 216
                                                     S  SACAN GN EFGKQV
Sbjct: 151 QMHSLVWKHGFLAENKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLEFGKQV 210

Query: 217 HGVALKLGVRNLVYVNNSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYNNNY 229
           HGVALKLGV NLVY+NNSL DMY KCGLF+DV KLFSN GARDVVTWNIMIMA VYN+NY
Sbjct: 211 HGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNHNY 270

[Close]

BLAST of Cp4.1LG01g17540 vs. ExPASy TrEMBL
Match: A0A1S3BPE7 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103492091 PE=3 SV=1)

HSP 1 Score: 278 bits (710), Expect = 4.75e-85
Identity = 160/309 (51.78%), Postives = 173/309 (55.99%), Query Frame = 0


Query: 36  PTSLNSLINSGRTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTP 95
           PTS N+L+NSGRT KHATQIHS LITTA LSLPFLFNNLLNLYAK G +DQTLL FSS P
Sbjct: 30  PTSFNNLLNSGRTSKHATQIHSQLITTALLSLPFLFNNLLNLYAKCGCVDQTLLLFSSAP 89

Query: 96  HDSKNVVSWTSLITQFSRSKRPFHALAFFNHM---------------------------- 155
             SK+VVSWTSLITQ +RSKRPF AL FFN M                            
Sbjct: 90  DVSKDVVSWTSLITQLTRSKRPFKALTFFNQMRLSGVYPNHYTLSAVLSACTDTMVSVHG 149

Query: 156 ------------------------------------------------------------ 215
                                                                       
Sbjct: 150 EQMHSLVWKHGFHAEVFVVSALVDMYAKCCDMRMAEKVFEEMPVRNLVSWNSMIVGFLQN 209

Query: 216 ---------------------------SALSACANVGNWEFGKQVHGVALKLGVRNLVYV 229
                                      S  SACAN GN  FGKQVHGVALKLGVRNLVY+
Sbjct: 210 KLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLAFGKQVHGVALKLGVRNLVYI 269

[Close]

BLAST of Cp4.1LG01g17540 vs. ExPASy TrEMBL
Match: A0A5A7UBQ7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold761G00990 PE=3 SV=1)

HSP 1 Score: 278 bits (710), Expect = 4.20e-84
Identity = 160/309 (51.78%), Postives = 173/309 (55.99%), Query Frame = 0


Query: 36  PTSLNSLINSGRTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTP 95
           PTS N+L+NSGRT KHATQIHS LITTA LSLPFLFNNLLNLYAK G +DQTLL FSS P
Sbjct: 142 PTSFNNLLNSGRTSKHATQIHSQLITTALLSLPFLFNNLLNLYAKCGCVDQTLLLFSSAP 201

Query: 96  HDSKNVVSWTSLITQFSRSKRPFHALAFFNHM---------------------------- 155
             SK+VVSWTSLITQ +RSKRPF AL FFN M                            
Sbjct: 202 DVSKDVVSWTSLITQLTRSKRPFKALTFFNQMRLSGVYPNHYTLSAVLSACTDTMVSVHG 261

Query: 156 ------------------------------------------------------------ 215
                                                                       
Sbjct: 262 EQMHSLVWKHGFHAEVFVVSALVDMYAKCCDMRMAEKVFEEMPVRNLVSWNSMIVGFLQN 321

Query: 216 ---------------------------SALSACANVGNWEFGKQVHGVALKLGVRNLVYV 229
                                      S  SACAN GN  FGKQVHGVALKLGVRNLVY+
Sbjct: 322 KLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLAFGKQVHGVALKLGVRNLVYI 381

[Close]

BLAST of Cp4.1LG01g17540 vs. TAIR 10
Match: AT1G11290.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 3.1e-23
Identity = 65/200 (32.50%), Postives = 103/200 (51.50%), Query Frame = 0


Query: 43  INSGRTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTPHDSKNVV 102
           +++ R +    +IH + + + F SL  +   L+++YAK GSL+     F       +NVV
Sbjct: 246 VSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGML--ERNVV 305

Query: 103 SWTSLITQFSRSKRPFHALAFFNH-------------MSALSACANVGNWEFGKQVHGVA 162
           SW S+I  + +++ P  A+  F               M AL ACA++G+ E G+ +H ++
Sbjct: 306 SWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLS 365

Query: 163 LKLGVRNLVYVNNSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYNNNYEDAC 222
           ++LG+   V V NSLI MY KC   D    +F  + +R +V+WN MI+    N    DA 
Sbjct: 366 VELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDAL 425

Query: 223 NNFWMMRREGLIPDEASYSS 230
           N F  MR   + PD  +Y S
Sbjct: 426 NYFSQMRSRTVKPDTFTYVS 443

[Close]

BLAST of Cp4.1LG01g17540 vs. TAIR 10
Match: AT3G61170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 3.1e-23
Identity = 69/208 (33.17%), Postives = 107/208 (51.44%), Query Frame = 0


Query: 35  LPTSLNSLINSGRTLKHATQIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSST 94
           +P+ LN    S   +K A+  H  ++ T + +   + N L+++YAK G +D  L  F   
Sbjct: 331 IPSILNCFALSRTEMKIASSAHCLIVKTGYATYKLVNNALVDMYAKRGIMDSALKVFEGM 390

Query: 95  PHDSKNVVSWTSLITQFSRSKRPFHALAFFNHM-------------SALSACANVGNWEF 154
               K+V+SWT+L+T  + +     AL  F +M             S LSA A +   EF
Sbjct: 391 --IEKDVISWTALVTGNTHNGSYDEALKLFCNMRVGGITPDKIVTASVLSASAELTLLEF 450

Query: 155 GKQVHGVALKLGVRNLVYVNNSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVY 214
           G+QVHG  +K G  + + VNNSL+ MY+KCG  +D   +F+++  RD++TW  +I+    
Sbjct: 451 GQQVHGNYIKSGFPSSLSVNNSLVTMYTKCGSLEDANVIFNSMEIRDLITWTCLIVGYAK 510

Query: 215 NNNYEDACNNFWMMRR-EGLIPDEASYS 229
           N   EDA   F  MR   G+ P    Y+
Sbjct: 511 NGLLEDAQRYFDSMRTVYGITPGPEHYA 536

[Close]

BLAST of Cp4.1LG01g17540 vs. TAIR 10
Match: AT3G24000.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 106.3 bits (264), Expect = 4.0e-23
Identity = 63/188 (33.51%), Postives = 99/188 (52.66%), Query Frame = 0


Query: 55  IHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTPHDSKNVVSWTSLITQFSRS 114
           +H+H++ + F     + N LLN+YAK GSL++    F   P   ++ V+WT+LI+ +S+ 
Sbjct: 82  VHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMP--QRDFVTWTTLISGYSQH 141

Query: 115 KRPFHALAFFNHM-------------SALSACANVGNWEFGKQVHGVALKLGVRNLVYVN 174
            RP  AL FFN M             S + A A       G Q+HG  +K G  + V+V 
Sbjct: 142 DRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVG 201

Query: 175 NSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYNNNYEDACNNFWMMRREGLI 230
           ++L+D+Y++ GL DD   +F  + +R+ V+WN +I      +  E A   F  M R+G  
Sbjct: 202 SALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFR 261

[Close]

BLAST of Cp4.1LG01g17540 vs. TAIR 10
Match: AT1G50270.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 101.3 bits (251), Expect = 1.3e-21
Identity = 69/226 (30.53%), Postives = 110/226 (48.67%), Query Frame = 0


Query: 54  QIHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTPHDSKNVVSWTSLITQFSR 113
           Q H+H++     S PF+ N+L++ Y+ SG  D     F     + K+VV+WT++I  F R
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGA--EDKDVVTWTAMIDGFVR 183

Query: 114 SKRPFHALAFFNHM-------------SALSACANVGNWEFGKQVHGVALKLG-VRNLVY 173
           +     A+ +F  M             S L A   V +  FG+ VHG+ L+ G V+  V+
Sbjct: 184 NGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVF 243

Query: 174 VNNSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYNNNYEDACNNFWMMRREG 233
           + +SL+DMY KC  +DD  K+F  + +R+VVTW  +I   V +  ++     F  M +  
Sbjct: 244 IGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSD 303

Query: 234 LIPDEASYSSYPIFNHWVLDLFLTVHQHLSQNKNSMLFHTHRGVIM 266
           + P+E + SS       V  L      H    KNS+  +T  G  +
Sbjct: 304 VAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTL 347

[Close]

BLAST of Cp4.1LG01g17540 vs. TAIR 10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 100.5 bits (249), Expect = 2.2e-21
Identity = 60/187 (32.09%), Postives = 101/187 (54.01%), Query Frame = 0


Query: 55  IHSHLITTAFLSLPFLFNNLLNLYAKSGSLDQTLLFFSSTPHDSKNVVSWTSLITQFSRS 114
           IHS +I + F SL ++ N+LL+LYA  G +      F   P   K++V+W S+I  F+ +
Sbjct: 143 IHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMP--EKDLVAWNSVINGFAEN 202

Query: 115 KRPFHALAFFNHM-------------SALSACANVGNWEFGKQVHGVALKLGVRNLVYVN 174
            +P  ALA +  M             S LSACA +G    GK+VH   +K+G+   ++ +
Sbjct: 203 GKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSS 262

Query: 175 NSLIDMYSKCGLFDDVVKLFSNIGARDVVTWNIMIMACVYNNNYEDACNNF-WMMRREGL 228
           N L+D+Y++CG  ++   LF  +  ++ V+W  +I+    N   ++A   F +M   EGL
Sbjct: 263 NVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGL 322

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g17540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3E6Q1	4.3e-22	32.50	Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop...	[more]
Q9LIQ7	5.6e-22	33.51	Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidop...	[more]
Q9SX45	1.8e-20	30.53	Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana OX...	[more]
A8MQA3	3.1e-20	32.09	Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX...	[more]
O23169	5.2e-20	27.32	Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana OX...	[more]

BLAST of Cp4.1LG01g17540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538639.1	7.11e-118	63.72	pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isofor...	[more]
KAG6590519.1	6.32e-116	62.78	putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros...	[more]
XP_022968835.1	7.90e-114	62.15	pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isofor...	[more]
XP_022961446.1	1.58e-113	61.83	pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isofor...	[more]
KAG7024054.1	1.58e-113	61.83	putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros...	[more]

BLAST of Cp4.1LG01g17540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HVZ6	3.83e-114	62.15	pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isofor...	[more]
A0A6J1HAE0	7.63e-114	61.83	pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like isofor...	[more]
A0A0A0LVV0	4.16e-91	60.98	DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G5607...	[more]
A0A1S3BPE7	4.75e-85	51.78	pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like OS=Cuc...	[more]
A0A5A7UBQ7	4.20e-84	51.78	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Cp4.1LG01g17540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11290.1	3.1e-23	32.50	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G61170.1	3.1e-23	33.17	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G24000.1	4.0e-23	33.51	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G50270.1	1.3e-21	30.53	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G21065.1	2.2e-21	32.09	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 162..182 e-value: 0.0022 score: 18.1 coord: 102..127 e-value: 0.0053 score: 16.9
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 187..228 e-value: 6.2E-9 score: 35.9
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 190..224 e-value: 4.5E-4 score: 18.2
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 188..222 score: 10.698286
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 34..131 e-value: 1.2E-8 score: 36.5
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 132..231 e-value: 1.4E-19 score: 72.6
None	No IPR available	PANTHER	PTHR24015:SF1954	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 36..127
None	No IPR available	PANTHER	PTHR24015:SF1954	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 128..229
None	No IPR available	PANTHER	PTHR24015	OS07G0578800 PROTEIN-RELATED	coord: 128..229
None	No IPR available	PANTHER	PTHR24015	OS07G0578800 PROTEIN-RELATED	coord: 36..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g17540.1	Cp4.1LG01g17540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding