Cp4.1LG01g17340 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g17340
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionRNA polymerase II transcriptional coactivator KIWI-like
LocationCp4.1LG01: 12180566 .. 12189290 (+)
RNA-Seq ExpressionCp4.1LG01g17340
SyntenyCp4.1LG01g17340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATTGTTTTTTTAAAAGTTTTAATTGTTTTTTTTTAAGGAAATGGTTAGAAATTTGAAAATGTTTTTTATTACACATGAAATTGTATTGCACTTGCTGTATTGAAGAGCACACATACTCGGGAAGGAGAAGAAGACCACGAGAAAGGAGGAAGAAATGTCTGCGAGAGGAAAGCGAAAAGAGGACGAAGATCATGTATCTGAGGGAGATGCTCCTCCAAAGAAGACATTCAGGAAAGATTCCGATGAAACTGATGAAATCGTTGTCTGCGAGGTCTTTCACTTCACCTTCCTCCTTCTGTTTTTAGTGCCTTTTATGTTGGTTTCAATTTTTTATTGGTTTTTTTTTTTGACCGCAGATTTCGAAGAACCGTAGGGTTATGGTGAGGAACTGGCAAGGAAAGATTGTGGTGGATATTCGGGAGTTTTATGTCAAAGATGGAAAGCAGATGCCTGGAAAGAAAGGTTCATCTCATCATCGTCTTCTTTTTTTCTCTCCCTATCTCTCCGGTTTTTCGTTTTTCTTGTAGTGGATGAATTGATTTTTCGTTTTGGATTTAGAAGTTTGTTTGCTGTTTTTCTAGGGTTTATGTTTCACTTTGAGTTTTCTGTTGTCTTCGTTTTCAGATTTGGCTTGATATTTGTTTTGAATTGTCTAATGATGGTCGAGGGAGAATTTGGTGGTGAAATGAAATTCTAATGTGGGGAACTTTTCTTGCTTCATTGTTGTGTTTCACTGTCTACACGATCACTTGGGCTGAACCAATAGTTTGATTCAGCTCCATTTTAGTTGTTGGAGATTCTTTTTGCATCAGATATTGAGATTGTAAAGCGTTACTCCATATTTTTTCTCTCTAGAATTTGATGTAGCGGTTTAAGTAATGATGTTTGGAAACTGCATTTATGGCTTTATCATAGATGTTTGTTCAAAGTGAAAAGGAAATATTTTTGGATGATCGTATGTATTCTTATGAACTTCAGTTGGTCTACAGGCAATTTTATAAAATTTACCTTTCTCTAAACTTTTGCTATGACATAATTTAGTGAGGTTCCAATTTTTATGATCCACCAAGAATTTTGATTTGGGGATAGTTTTCTTATCTGGTTGATGTAAAATAGTTGTTGGGAATATTTAAGGAAGAACGTATGTATAGGGATGAAAGAATAGATTTTGAAGGGCTGGGTAGAGGGTTTGAAGAAAAAAAAGAAAAGAAAAAAAGATGGTGAAGAAGAGACTTGAGTATGCCCAATTGGGCTGGAAACTTACCTTTGTAGTGACCAGACGTCAATTTCACACTAATTGATACAGTATTACGGAAGCCTTAAAGGAAGGTTATACATTAAGAATCACATGCTCAATCCTTTGCTATGAAGAGTAGTAAAGGAGGAGTTAGATTAAGGTGGGCTTTCTCGCTCAAGTTGAAAGGTATTGGCGAACAACATGGTAAACTTGACATGAAGTGATACCATGTCATGGGGAATGGAGAAGCTTCATGAAATACCTTTGATGTTATGGAAAGAAGAGATTGTTGAAGCTATATGTTAAAATTGCGGGAGAAAAGCTTTGAATACGCCTGCTTTCTTGGAGGCTGCAAGAAAACTATAGTGACTTCCACCATTTGAAACGGAGATCGCATATCCTAACGAAGAAAATTATGTGGTTCAAATAGTTGGTAGAGTGAGGAGTGTCCTTGCAGGATTTTTAGAAGCAGCTTCCAAGTTCAAGGTGTTTAATTCTGTTTGAATAGTTGGTGTTGACACTTAAAGTGAAGTAGGAGTAGAAGGTGGGCCGAACAATATTTTCACAATTCATGTAAGATAAAATGGGGGTTCAAATGATAAAAAAATTCTGTTGTTGTTGAAGTTTACTTATACAAGTTGCTGATTAAGGAGAAGGTGGAATGTCTGGATTTGGAAGAGGAAGATGGTTTATTTAAATATAAATAGTTGGTTAATTTAATTGACAAAGATGGTTTATCGCAAAGTCACTTGTTTATGCAATGTACATGCGCTCAGAATTTCTGGACAACGATTCTCAATATATTTGGATGACATCTCATATTTCCTAGGGAGGTAAAGGAATTTTGAGATATGGCCTTAACGTACCACCCTTTCAAGAACGCAAAAGCCCTATTGTGGACAAACCTCATCATGGCTTTCTTTTGGAACCTATGGAAAGAAAGAAATCAGAGAATATTTGCAGACAAGAAACAGACCTACACAAAACTTTTCGACAATGTTGTTTACCAAGCTATATCTTGGTGTTAATTGTCTAATATTTTTACTTCCTATAGTTATACCTCCCTCATTGCAAATTGGGAAGGTCTTTTGTAAACACCATGGATTATACATCCCTCTTGTAAATTTCAATCATCAATGAAATTGTCTCCTATAAAAAAAATAAAAATAAATAATTAATTGGCATAGATGTTAGAGAAAAAGTCATATGCCTAGGGGCTTGCATGGAAAAATGAAACTTCAGAGTTTTTAAGGGAATTTGGAAAGGTTGGAATCGGTGAGTTCTAGAAATATATTATAGAAGGTGGTTGGTAATAAGTTTGGGACGCTTTTGGTAGAGGTAACAATAGGGTTTTGGTGGCTGAAGAGGTGTTAGTGGGGTATTATGTGGAAGAATTGGTGTACATAGAAGTGGAGGACTTTTGATAAATGTTTAAAGAAGCATGAGGGAAGAAGGGAAAAATTAAAAAAAAGGTGACAATGAGTTGGCATTAAATAAGGATCGATTTTGAAAAGGCTTGTGACCATGTGGATTGGAATTTCCTTGACAAAATATTGACAATAAAGATTCTAGTTATAAATGGAGATCTTGGATTTGGAGTTAGTGTCAAGTCGATAAAATTTTCCGTTCTCATTAATGGAAATCCTAAGGGTAAGATCACAACTTCGTGAAGCCTTAGGCAAAGGGACCCTTTATCTCCTTTCTTATTCTTGCTTGTTGTAGATGTTTTGAGCAGAATGGTCTCCTAAAGTATTGAAGGTAAGAATTGTGGTAAATTGTCATAAGTTTTGATTTGATTTGGTTATTTGGATTAGATTTGATTTGGTTATTTGGATTTGATTTGATTTGGGTATTTGAATTAGATTTAGTCATACAGATTTAGTCACATCGCAATTTGATATCGGGATTTGGGAGTTTTGTGTCACATTGTATTTCTTGAGTGACATATTGGAGAGAGTCTTTGTAGTGTGATAGTGAGGTATTCACTTGGAACGCTTTGTTTTATTAGTGATTGGTTGCTACTCGTGGATGTAGGGGATCTTCTTCTCTTCGAACCATGTAAATATCTTGGTGTCTCTTTGTGTAATTTTGTTCATTGGTGTTGTGAGTACATTTGTTCCGCTTTCGGCGCACAGCAATTGGTATCAGAGCCTAATTGTGGTATTTGGGGTATTGTGAAAGTTTTGGCCTCATCGACCACTAGACGTGCTCACAATCGTGCTTATTTTCTTGAAAATCAATTTTCAAGAATTGTGTTTTTAGTTACATCCAGATTACTTATTGCAAATGGCATAATCATCTGGAATTAAATCACGGCGTGGATCGAGATTTTTGAGCTCTAATTTNTTCATTGGTGTTGTGAGTACATTTGTTCCGCTTTCGGCGCACAGCAATTGGTATCAGAGCCTAATTGTGGTATTTGGGGTATTGTGAAAGTTTTGGCCTCATCGACCACTAGACGTGCTCACAATCGTGCTTATTTTCTTGAAAATCAATTTTCAAGAATTGTGTTTTTAGTTACATCCAGATTACTTATTGCAAATGGCATAATCATCTGGAATTAAATCACGGCGTGGATCGAGATTTTTGAGCTCTAATTTCGAAGTAGAGAAATTTGATGGAACCAATAATTTTGGTGTTTGGCGAGGCGAAGTTAGCGATTTGCTGATCATGCAAGATCTTGATGCTTCTCTCCAAGAGGAGATGCCTGAAGACATGACAGACGCCGAATGGATGAAATTAAATCGACAAGCTTGCGGAATTATTCGATCCTGTCTTGGCAAGGTTTAGAAATATCCATTTATGAAGGTGACCATGGCGAAAGAACTATAGGACAAGCTTGAGGCGAAATATATGCAAAATAGTGGAAAATAAACTCTATTTGAAGAAGAAACTCTTCCGTTTTGACTACAAGAAATGTATCTCAATTAAATTCTTTGACGGAGACAAGGCAGCGTTCTTATTAAATTCTTTGACGGAGTCCGACGAGTTTTTAATAACCACTCTACTACATGGAATCACTGATATTGATTTTGAAGATGTTTCAAATGTCTTGATGAATAATGAGGTGGGAAAGAAGGAAAAGGAGGCATATCAAGATTCTAGCTCAAATGTTCTCACTGCTTGTGGAAGGACTTCTACTTTGAAAAAGAGCGAACGTGGAAAGTCCCGATCAAAGTCGAGAGGTAGATATGATAATTGGAGAAAACTTGATAAAAATGAGTGTGCATATTGTCGATAGAAAGGCCATTGGAAGAAAGATTGCCCGATCTTAAAAGAGAAGAGGTCGAAGTCGACTCTCGCCTATGCACGAGGAAGAGTTGGAGTTAGTGAATTTATGGGCTTGTAACATAGGGTTATTGGCAAAGTGGTTACGGCGTTTCCCCTTTTGAGTCTACTTCTCGTTGGTATAGGATTATCGTGAGCTAGTATTACTCTCATTCCTTCTAATGGTCGTCGAGTGGGGTTAAAGGCACATTCAAAAACCTTTGGAAAGATATTTTGAATGAGCCTTTTTCTTTTTCTGATTTAATTAAGTGTGTGGTGGTGATAGGAATGATACATTTTTTAGGGACAATAGGTGGATGATGGATCGACCCCTCTACAGCATGTTTCCTGGTCTTATCATTTATTCGCTATGAAAGACTGGTGTTTTTCTGATGTTCTAATTCATTTTGTCATTTGTTTAGGTTCCGTCATTTGTTTGACAGGAAAACAATGGAGGTAATGGCTCTCCTTTCTTTAACCGGAGAGTTTGAGCTTAGATCGGAAGAGGATTTCATTGGTGGAGCCCTAATACTTTTGAATGCTTTTCTCATTATTATTGTGCCCTTTCCCATCTAGGGAGTCTATTTCTTTGATTCTTTTGAAGATGAAAATTCTAGAAAAGGTGAACTTATTTATTTATTTATTTTTCGGCTGGTTATCCATGGAAGAATTAATACTTTGGATAGGCTTTTGAGGAAGTTGTCATTTTTGGGAAGGCCTATATGTTGTATCCTTTTTCAGAGGGCGGTGGAAGGTTAGGATACTTTATTTTCAAGTTGTGATTATGCTCAAATGGTGTGGAATTACTTCATTGGTGTGTTTGGCATATAGCTTGCTTGACACAAAGATTTTAGTGAAATGATCACTGTTCCTCCCCCATCCGCCATTTTGGGAGAAAGGATGTTCTTTATGCCAAATCGAGGTGTGTACTTTATCGTGGGGCATTTGGAGAGAGAGAAATAATAGAAAGTTGGTCTCTTATAAAAAACAAACAAACAAAAATTTCCCCGTATGAAAGTTTTTAGAGCTTTTGTTATCATTTTAATTGGATAGAGGGATATTTGTATGCTTCTAAAGGAGATTTTATTCCTTTTAACCTTTCATTATTGTGGGGAAGTTTAAAAAACGTAACCTTACCTCTAGGCTTTAGGCTTGGTATTGAAAATTATCCAAAAATTTGAAAATTGAGACACACCCCCTCGTGCATCTTCTCTACCTCTTACCAAAGCCACTACCTGGAAAAATAGCATCAAGGAATTCTAAGCTTGTTGAAGTTGTCTTTACTTTAGAAAGTTTAGTAACTTTCCCGGTGAAGGTAATCTAGCTTGTTGTATAAACTTGTTTAGGTTCAAATAAACTGAACTCTAATGATATGGGGGACATATAAACTCTGTTTTGAGTAGAATATTCGGTATTTTGCACACACTTGGCATGTGTCAAACTGTTGGGTATCTTCCTTATTTTCCTTTGATTGATAATAGAAACCAACGATGAGTTCACAAAATAACAAGGTCATACTTTACTGGATTGAAGCCCCTTTTGTAGATTGTTTCTTGTTTCCCATTTCTTTGTGGACTATGCCTTTCTACTCTCTCAATAAATTTTTTTGTTTATCATCATAAACAGACAAAATAACAAGGTCATACTTTACTGGATTGAAGCCCCTTTTGTAGATTGTTTCTTGTTTCCCATTTCTTTGTGGACTATGCCCTTCTACTCTCTCAATAAATTTTTTTGTTTATCATCATAAACAGAAAAAATATATATATAGCATCAAGATACAAGGTAGAACTCCCAGCCAATTTGAGAGTTTCGGTAAACTCTCGCAAGAGACGACTATTTCTCCTCACACTAATCTCCTAACCAATTTCCTACACTACTCACCCCTTCTCACCAACTGTCGCTTTTTGTCCTACTTACTAGATGTATGAACTTTCGGAGGGCTGACAATAGTATTTCAAAAAGCTCAAAAGGTGCAAACTTATTTTTTATTTTTAAATTTGGACATGCTGAGATGTAGCAGAAGCATACTTGGCAGAGAACTCGTTTGTTATTGGAAAATAAAGAACAAATATGGTGTCTTCTGCCGTTCTATGATTACTATTACCCAAATCTCTCAGACAAGGATATAGAGTAGTAGAGAAAATTTAGAGGCAGACTTGGCATAAGAGAAAGAGAACCATATGAACGAGGGAGAAGGAGAAAGATAGTTGGGCCAAAAGTGAAAGTGGGAATATATCTAGCGATGAGTGATAGGCTGGTTTCAGTGCAGGAGAAATCAATTGTGGAGGATAGAAGTTTGATTTTTTTGGTTGAAAAGTTACTGCAAAAGAGACTTCTGATTTGGATGGGTTGGAATCCGACTTTCTTGTTTTAAAAGCTGTTGAAACCGAGGCTTCAAATTTTGATTTGCAGTGGTTCAATCTTCATAACCCTTTTTTACACTCCAAAAGGGATTTATTACTATTACCATTTTATTTCTGGGCTGTCATGGAAACGTTTTAAATATATTGGTACTTGTTCAAAAAAAGGTCTGCTTATGTATAGGTAGGACTACACAACTTCTTGTCCCTCCCTTGATGCATTTCAACAATCTCAGTTCTAATGCTTGCACAAGATTGCAACACTATGCATGCTATATTGTGTAGTCATATATATAAATATATGAAGTTGCATATGTAGCCAAGCTTAACATAAAATAAGATAGTAAAACACTGAAAATTTTGGATCTCACGTTATCAGCTGAAGTAATTTGAACAGAAGAGCGTTTCTCCAAATGAAAAACTATGCAATAAAACCTCTGATAGGCCTCTATTTTAAATATCTCTCCGAGTAAGTACAAATGGGGGAATTAATCCCTGATGGCATTTAGAGTTTTGGTAGGGTACTTGTTTATTTGTTCAATCCCTCTGTTTGAACTTGTGTGGCTAAGGACTTTAGTCTTTATTCATTATCTCTCGTTCTTTTAAATTTGAGCTTTTCTTCGGTAGCTGTGTAGTTAGTCTATTGTTCTTGGGCCCTTTTGTTTTAGTTTTTTTTTAACTTACCATAGACGATATAATTATACGAGTGGGTTGCATATAATACTGCAAATGTAGAAGTTGAGTATGCCGTTTGATTTTCTTTTTGTTTCCAGGCATCTCGCTATCCTTGGATCAGGTATGCACTTATTTTTATTTTCTTAAGCTTCAATATCTTTTTGTGTTTCTTTGTTCTTTTAGAGAAGCTGATCATCTTTCTACTTTTTACAATGGTTGTCTTTCTGCAGTGGAATGTTCTCCGTAATCATGTAGATGAAATTGACAAGGCTGTTAATGAAAACTCGTTAGGTGATTAGTGAGGCATCTTTGGTTGATATTAGTAGCAAATGTATTGCTCCGTAGGGTTGTTTTGCTTTATGACAACGAAAGTATGCCTTTTGTACAGCCAATGGGCTTGTTTTTGGTGGAAATGAAGACCAGAGAGCAGGTATATTAGCAGTTGTATTTGTATAAACTGGATCACTGGATTGACATTTTGAATTATAGTATGGCATAACTGACTATTACAATTCTCAATGAGTATCAAATTGATATTTTGAGCATCAAATAGAGAATCTTCTCCTGGTTTAGATATTGCACCATGTTCCAAGCAAAAGAAGTTTCTAAATGGCCAAAACTCGACTTCGTACCGATCCCTCTCCTAGGTTACATATCATCTTGGAGTAAGCCAATCCGACCTGGAGGAGCTCATCTCTCTCTTTATGACAATTGGGTAGCAAGCTTCCCAAACTATATGCCAAGATCGAAGAAGAACATGGAGCCTTGACATGATGTCATGGTTCGAGATGTGGCAGAATTTGTTGCACCATCGTCCTCGAAGAATGGCTCTCGAAAGCAACTCGTTTCCTATGGACAGGTTGCCAAAGGTGATGCATAGAATTGGCTGATGAGATGTGATGAGAGGGTTTGAAATGGAAGAATGAGAGCAGCCAAAGAGTACATAGAGTGGCTGCTTCTCCTCCAAGTGAATGAGCTGTTGTAATTCTCCATTACTCTTGTCATCTGCAATATTTGAGATCATGTTTTGTCATACCAATAATTCTTTTTACAGCATGTTTGATAGTGCTTTTGTTTTTGTTTTCTAATAGTCTTCAACGTTATTTGCCCGACTTTGTTATGTGTAATTACATACAATGAAATTAGACCAACAAGAATATAGTTAAAAATGTAACATCAT

mRNA sequence

AAAATTGTTTTTTTAAAAGTTTTAATTGTTTTTTTTTAAGGAAATGGTTAGAAATTTGAAAATGTTTTTTATTACACATGAAATTGTATTGCACTTGCTGTATTGAAGAGCACACATACTCGGGAAGGAGAAGAAGACCACGAGAAAGGAGGAAGAAATGTCTGCGAGAGGAAAGCGAAAAGAGGACGAAGATCATGTATCTGAGGGAGATGCTCCTCCAAAGAAGACATTCAGGAAAGATTCCGATGAAACTGATGAAATCGTTGTCTGCGAGATTTCGAAGAACCGTAGGGTTATGGTGAGGAACTGGCAAGGAAAGATTGTGGTGGATATTCGGGAGTTTTATGTCAAAGATGGAAAGCAGATGCCTGGAAAGAAAGGCATCTCGCTATCCTTGGATCAGTGGAATGTTCTCCGTAATCATGTAGATGAAATTGACAAGGCTGTTAATGAAAACTCGTTAGGTGATTAGTGAGGCATCTTTGGTTGATATTAGTAGCAAATGTATTGCTCCGTAGGGTTGTTTTGCTTTATGACAACGAAAGTATGCCTTTTGTACAGCCAATGGGCTTGTTTTTGGTGGAAATGAAGACCAGAGAGCAGGTATATTAGCAGTTGTATTTGTATAAACTGGATCACTGGATTGACATTTTGAATTATAGTATGGCATAACTGACTATTACAATTCTCAATGAGTATCAAATTGATATTTTGAGCATCAAATAGAGAATCTTCTCCTGGTTTAGATATTGCACCATGTTCCAAGCAAAAGAAGTTTCTAAATGGCCAAAACTCGACTTCGTACCGATCCCTCTCCTAGGTTACATATCATCTTGGAGTAAGCCAATCCGACCTGGAGGAGCTCATCTCTCTCTTTATGACAATTGGGTAGCAAGCTTCCCAAACTATATGCCAAGATCGAAGAAGAACATGGAGCCTTGACATGATGTCATGGTTCGAGATGTGGCAGAATTTGTTGCACCATCGTCCTCGAAGAATGGCTCTCGAAAGCAACTCGTTTCCTATGGACAGGTTGCCAAAGGTGATGCATAGAATTGGCTGATGAGATGTGATGAGAGGGTTTGAAATGGAAGAATGAGAGCAGCCAAAGAGTACATAGAGTGGCTGCTTCTCCTCCAAGTGAATGAGCTGTTGTAATTCTCCATTACTCTTGTCATCTGCAATATTTGAGATCATGTTTTGTCATACCAATAATTCTTTTTACAGCATGTTTGATAGTGCTTTTGTTTTTGTTTTCTAATAGTCTTCAACGTTATTTGCCCGACTTTGTTATGTGTAATTACATACAATGAAATTAGACCAACAAGAATATAGTTAAAAATGTAACATCAT

Coding sequence (CDS)

ATGTCTGCGAGAGGAAAGCGAAAAGAGGACGAAGATCATGTATCTGAGGGAGATGCTCCTCCAAAGAAGACATTCAGGAAAGATTCCGATGAAACTGATGAAATCGTTGTCTGCGAGATTTCGAAGAACCGTAGGGTTATGGTGAGGAACTGGCAAGGAAAGATTGTGGTGGATATTCGGGAGTTTTATGTCAAAGATGGAAAGCAGATGCCTGGAAAGAAAGGCATCTCGCTATCCTTGGATCAGTGGAATGTTCTCCGTAATCATGTAGATGAAATTGACAAGGCTGTTAATGAAAACTCGTTAGGTGATTAG

Protein sequence

MSARGKRKEDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENSLGD
Homology
[Close]
BLAST of Cp4.1LG01g17340 vs. ExPASy Swiss-Prot
Match: O65154 (RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana OX=3702 GN=KIWI PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 9.5e-31
Identity = 68/107 (63.55%), Postives = 85/107 (79.44%), Query Frame = 0 

Query: 1   MSARGKRKEDE----DHVSEGDAPPKKTFR--KDSDETDEIVVCEISKNRRVMVRNWQGK 60
           MS+RGKRK+++    D  SE  AP KK  +   DSD++D+IVVC ISKNRRV VRNW GK
Sbjct: 1   MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 61  IVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENS 102
           I +DIREFYVKDGK +PGKKGISLS+DQWN LRNH ++I+KA+++ S
Sbjct: 61  IWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKALSDLS 107

[Close]
BLAST of Cp4.1LG01g17340 vs. ExPASy Swiss-Prot
Match: O65155 (RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana OX=3702 GN=KELP PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.8e-12
Identity = 36/92 (39.13%), Postives = 60/92 (65.22%), Query Frame = 0 

Query: 8   KEDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDG 67
           KE+ED    GD    K   K+ D+  ++++C +S  RRV ++ ++GK +V IRE+Y KDG
Sbjct: 74  KEEED----GDKDCGKG-NKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDG 133

Query: 68  KQMPGKKGISLSLDQWNVLRNHVDEIDKAVNE 100
           K++P  KGISL+ +QW+  + ++  I+ AV +
Sbjct: 134 KELPTSKGISLTDEQWSTFKKNMPAIENAVKK 160

[Close]
BLAST of Cp4.1LG01g17340 vs. ExPASy Swiss-Prot
Match: Q5ZK63 (Activated RNA polymerase II transcriptional coactivator p15 OS=Gallus gallus OX=9031 GN=SUB1 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.2e-10
Identity = 34/94 (36.17%), Postives = 62/94 (65.96%), Query Frame = 0 

Query: 7   RKEDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYV-K 66
           +K+     S+G A  K++  +D +      + +I K R V VR+++GK+++DIRE+++ +
Sbjct: 38  KKQKTGESSKGAASSKQSSNRDEN------MFQIGKMRYVSVRDFKGKVLIDIREYWMDQ 97

Query: 67  DGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNE 100
           +G+  PG+KGISL+ +QWN L+  + +ID AV +
Sbjct: 98  EGEMKPGRKGISLNPEQWNQLKEQISDIDDAVRK 125

[Close]
BLAST of Cp4.1LG01g17340 vs. ExPASy Swiss-Prot
Match: P11031 (Activated RNA polymerase II transcriptional coactivator p15 OS=Mus musculus OX=10090 GN=Sub1 PE=1 SV=3)

HSP 1 Score: 65.5 bits (158), Expect = 4.1e-10
Identity = 30/74 (40.54%), Postives = 53/74 (71.62%), Query Frame = 0 

Query: 27  KDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYV-KDGKQMPGKKGISLSLDQWNV 86
           K S  + +  + +I K R V VR+++GKI++DIRE+++  +G+  PG+KGISL+++QW+ 
Sbjct: 53  KQSSSSRDDNMFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQ 112

Query: 87  LRNHVDEIDKAVNE 100
           L+  + +ID AV +
Sbjct: 113 LKEQISDIDDAVRK 126

[Close]
BLAST of Cp4.1LG01g17340 vs. ExPASy Swiss-Prot
Match: Q63396 (Activated RNA polymerase II transcriptional coactivator p15 OS=Rattus norvegicus OX=10116 GN=Sub1 PE=1 SV=3)

HSP 1 Score: 65.5 bits (158), Expect = 4.1e-10
Identity = 30/74 (40.54%), Postives = 53/74 (71.62%), Query Frame = 0 

Query: 27  KDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYV-KDGKQMPGKKGISLSLDQWNV 86
           K S  + +  + +I K R V VR+++GKI++DIRE+++  +G+  PG+KGISL+++QW+ 
Sbjct: 53  KQSSSSRDDNMFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQ 112

Query: 87  LRNHVDEIDKAVNE 100
           L+  + +ID AV +
Sbjct: 113 LKEQISDIDDAVRK 126

[Close]
BLAST of Cp4.1LG01g17340 vs. NCBI nr
Match: XP_023543027.1 (RNA polymerase II transcriptional coactivator KIWI-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209 bits (532), Expect = 4.20e-68
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MSARGKRKEDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
           MSARGKRKEDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1   MSARGKRKEDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61  EFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENSLGD 104
           EFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENSLGD
Sbjct: 61  EFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENSLGD 104

[Close]
BLAST of Cp4.1LG01g17340 vs. NCBI nr
Match: XP_022932999.1 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 206 bits (523), Expect = 9.91e-67
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 0 

Query: 1   MSARGKRKEDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
           MSARGKRK+DEDHV EGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1   MSARGKRKDDEDHVYEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61  EFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENSLGD 104
           EFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENSLGD
Sbjct: 61  EFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENSLGD 104

[Close]
BLAST of Cp4.1LG01g17340 vs. NCBI nr
Match: XP_022977898.1 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 202 bits (514), Expect = 2.34e-65
Identity = 99/104 (95.19%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MSARGKRKEDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
           MSARGKR++DEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNR+V+VRNWQGKIVVDIR
Sbjct: 1   MSARGKRRDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRKVIVRNWQGKIVVDIR 60

Query: 61  EFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENSLGD 104
           EFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAV+ENSLGD
Sbjct: 61  EFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVDENSLGD 104

[Close]
BLAST of Cp4.1LG01g17340 vs. NCBI nr
Match: KAG6603408.1 (RNA polymerase II transcriptional coactivator KIWI, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 204 bits (518), Expect = 3.11e-65
Identity = 101/102 (99.02%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MSARGKRKEDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
           MSARGKRK+DEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1   MSARGKRKDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61  EFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENSL 102
           EFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENSL
Sbjct: 61  EFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENSL 102

[Close]
BLAST of Cp4.1LG01g17340 vs. NCBI nr
Match: XP_038881105.1 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Benincasa hispida])

HSP 1 Score: 197 bits (500), Expect = 3.20e-63
Identity = 96/104 (92.31%), Postives = 101/104 (97.12%), Query Frame = 0 

Query: 1   MSARGKRKEDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
           MSARGKRK++EDH SEGDAPP KTF+KDSD+TDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1   MSARGKRKDEEDHASEGDAPPSKTFKKDSDDTDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61  EFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENSLGD 104
           EFYVKDGKQMPGKKGISLSLDQWNVLRNHV+EIDKAVNENS GD
Sbjct: 61  EFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIDKAVNENSSGD 104

[Close]
BLAST of Cp4.1LG01g17340 vs. ExPASy TrEMBL
Match: A0A6J1EYI2 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111439635 PE=3 SV=1)

HSP 1 Score: 206 bits (523), Expect = 4.80e-67
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 0 

Query: 1   MSARGKRKEDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
           MSARGKRK+DEDHV EGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1   MSARGKRKDDEDHVYEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61  EFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENSLGD 104
           EFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENSLGD
Sbjct: 61  EFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENSLGD 104

[Close]
BLAST of Cp4.1LG01g17340 vs. ExPASy TrEMBL
Match: A0A6J1IRG1 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478052 PE=3 SV=1)

HSP 1 Score: 202 bits (514), Expect = 1.13e-65
Identity = 99/104 (95.19%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MSARGKRKEDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
           MSARGKR++DEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNR+V+VRNWQGKIVVDIR
Sbjct: 1   MSARGKRRDDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRKVIVRNWQGKIVVDIR 60

Query: 61  EFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENSLGD 104
           EFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAV+ENSLGD
Sbjct: 61  EFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVDENSLGD 104

[Close]
BLAST of Cp4.1LG01g17340 vs. ExPASy TrEMBL
Match: A0A6J1D5M3 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017843 PE=3 SV=1)

HSP 1 Score: 195 bits (496), Expect = 6.32e-63
Identity = 95/103 (92.23%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 1   MSARGKRKEDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
           MSARGKRK+D++H SEGDAPPKKT +KDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1   MSARGKRKDDDEHASEGDAPPKKTSKKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61  EFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENSLG 103
           EFYVKDGKQMPGKKGISLS+DQWNVLRNHV+EIDKAVNENSLG
Sbjct: 61  EFYVKDGKQMPGKKGISLSMDQWNVLRNHVEEIDKAVNENSLG 103

[Close]
BLAST of Cp4.1LG01g17340 vs. ExPASy TrEMBL
Match: A0A6J1HRT2 (RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466134 PE=3 SV=1)

HSP 1 Score: 193 bits (491), Expect = 3.33e-62
Identity = 94/101 (93.07%), Postives = 99/101 (98.02%), Query Frame = 0 

Query: 1   MSARGKRKEDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
           MSARGKRK+DEDH SEGDAPPKKTF+KDS+ETDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1   MSARGKRKDDEDHASEGDAPPKKTFKKDSEETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61  EFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENS 101
           EFYVKDGK+MPGKKG SLSLDQWNVLRNHV+EIDKAVNENS
Sbjct: 61  EFYVKDGKEMPGKKGFSLSLDQWNVLRNHVEEIDKAVNENS 101

[Close]
BLAST of Cp4.1LG01g17340 vs. ExPASy TrEMBL
Match: A0A6J1EHI0 (RNA polymerase II transcriptional coactivator KIWI-like OS=Cucurbita moschata OX=3662 GN=LOC111432568 PE=3 SV=1)

HSP 1 Score: 192 bits (489), Expect = 6.72e-62
Identity = 94/101 (93.07%), Postives = 99/101 (98.02%), Query Frame = 0 

Query: 1   MSARGKRKEDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60
           MSARGKRK+DEDH SEGDAPPKKT +KDS+ETDEIVVCEISKNRRVMVRNWQGKIVVDIR
Sbjct: 1   MSARGKRKDDEDHASEGDAPPKKTLKKDSEETDEIVVCEISKNRRVMVRNWQGKIVVDIR 60

Query: 61  EFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENS 101
           EFYVKDGK+MPGKKGISLSLDQWNVLRNHV+EIDKAVNENS
Sbjct: 61  EFYVKDGKEMPGKKGISLSLDQWNVLRNHVEEIDKAVNENS 101

[Close]
BLAST of Cp4.1LG01g17340 vs. TAIR 10
Match: AT5G09250.1 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 134.0 bits (336), Expect = 6.7e-32
Identity = 68/107 (63.55%), Postives = 85/107 (79.44%), Query Frame = 0 

Query: 1   MSARGKRKEDE----DHVSEGDAPPKKTFR--KDSDETDEIVVCEISKNRRVMVRNWQGK 60
           MS+RGKRK+++    D  SE  AP KK  +   DSD++D+IVVC ISKNRRV VRNW GK
Sbjct: 1   MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 61  IVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVDEIDKAVNENS 102
           I +DIREFYVKDGK +PGKKGISLS+DQWN LRNH ++I+KA+++ S
Sbjct: 61  IWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKALSDLS 107

[Close]
BLAST of Cp4.1LG01g17340 vs. TAIR 10
Match: AT5G09240.1 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 101.3 bits (251), Expect = 4.8e-22
Identity = 57/109 (52.29%), Postives = 75/109 (68.81%), Query Frame = 0 

Query: 1   MSARGKRKE------DEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGK 60
           MS  GKRK+      D+   SE  APPKK   K +DE ++I +C + KNRRV VRN  G+
Sbjct: 1   MSENGKRKDEDVRASDDRDESETHAPPKKV-AKPADEIEDIFICNLDKNRRVFVRNCNGR 60

Query: 61  IVVDIREFYVKDGKQMP--GKKGISLSLDQWNVLRNHVDEIDKAVNENS 102
           I + IR+F+VKDG  +P   K+GISLSL+QWN LRNH ++IDKA++E S
Sbjct: 61  IWIAIRQFFVKDGITLPCNSKQGISLSLEQWNDLRNHEEDIDKALSELS 108

[Close]
BLAST of Cp4.1LG01g17340 vs. TAIR 10
Match: AT5G09250.2 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 97.8 bits (242), Expect = 5.4e-21
Identity = 52/81 (64.20%), Postives = 62/81 (76.54%), Query Frame = 0 

Query: 1  MSARGKRKEDE----DHVSEGDAPPKKTFR--KDSDETDEIVVCEISKNRRVMVRNWQGK 60
          MS+RGKRK+++    D  SE  AP KK  +   DSD++D+IVVC ISKNRRV VRNW GK
Sbjct: 1  MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 61 IVVDIREFYVKDGKQMPGKKG 76
          I +DIREFYVKDGK +PGKKG
Sbjct: 61 IWIDIREFYVKDGKTLPGKKG 81

[Close]
BLAST of Cp4.1LG01g17340 vs. TAIR 10
Match: AT5G09240.2 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-17
Identity = 57/137 (41.61%), Postives = 75/137 (54.74%), Query Frame = 0 

Query: 1   MSARGKRKE------DEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGK 60
           MS  GKRK+      D+   SE  APPKK   K +DE ++I +C + KNRRV VRN  G+
Sbjct: 1   MSENGKRKDEDVRASDDRDESETHAPPKKV-AKPADEIEDIFICNLDKNRRVFVRNCNGR 60

Query: 61  IVVDIREFYVKDGKQMP--GKKGISLSLD----------------------------QWN 102
           I + IR+F+VKDG  +P   K+GISLSL+                            QWN
Sbjct: 61  IWIAIRQFFVKDGITLPCNSKQGISLSLEQVFTSLFHCLCLPHVHMSCLLHETFFLMQWN 120

[Close]
BLAST of Cp4.1LG01g17340 vs. TAIR 10
Match: AT4G10920.1 (transcriptional coactivator p15 (PC4) family protein (KELP) )

HSP 1 Score: 71.6 bits (174), Expect = 4.1e-13
Identity = 36/92 (39.13%), Postives = 60/92 (65.22%), Query Frame = 0 

Query: 8   KEDEDHVSEGDAPPKKTFRKDSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDG 67
           KE+ED    GD    K   K+ D+  ++++C +S  RRV ++ ++GK +V IRE+Y KDG
Sbjct: 74  KEEED----GDKDCGKG-NKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDG 133

Query: 68  KQMPGKKGISLSLDQWNVLRNHVDEIDKAVNE 100
           K++P  KGISL+ +QW+  + ++  I+ AV +
Sbjct: 134 KELPTSKGISLTDEQWSTFKKNMPAIENAVKK 160

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g17340 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O651549.5e-3163.55RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana OX=37... [more]
O651555.8e-1239.13RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana OX=37... [more]
Q5ZK633.2e-1036.17Activated RNA polymerase II transcriptional coactivator p15 OS=Gallus gallus OX=... [more]
P110314.1e-1040.54Activated RNA polymerase II transcriptional coactivator p15 OS=Mus musculus OX=1... [more]
Q633964.1e-1040.54Activated RNA polymerase II transcriptional coactivator p15 OS=Rattus norvegicus... [more]
BLAST of Cp4.1LG01g17340 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023543027.14.20e-68100.00RNA polymerase II transcriptional coactivator KIWI-like isoform X2 [Cucurbita pe... [more]
XP_022932999.19.91e-6798.08RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Cucurbita mo... [more]
XP_022977898.12.34e-6595.19RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Cucurbita ma... [more]
KAG6603408.13.11e-6599.02RNA polymerase II transcriptional coactivator KIWI, partial [Cucurbita argyrospe... [more]
XP_038881105.13.20e-6392.31RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Benincasa hi... [more]
BLAST of Cp4.1LG01g17340 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EYI24.80e-6798.08RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Cucurbita ... [more]
A0A6J1IRG11.13e-6595.19RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Cucurbita ... [more]
A0A6J1D5M36.32e-6392.23RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Momordica ... [more]
A0A6J1HRT23.33e-6293.07RNA polymerase II transcriptional coactivator KIWI-like isoform X1 OS=Cucurbita ... [more]
A0A6J1EHI06.72e-6293.07RNA polymerase II transcriptional coactivator KIWI-like OS=Cucurbita moschata OX... [more]
BLAST of Cp4.1LG01g17340 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G09250.16.7e-3263.55ssDNA-binding transcriptional regulator [more]
AT5G09240.14.8e-2252.29ssDNA-binding transcriptional regulator [more]
AT5G09250.25.4e-2164.20ssDNA-binding transcriptional regulator [more]
AT5G09240.21.6e-1741.61ssDNA-binding transcriptional regulator [more]
AT4G10920.14.1e-1339.13transcriptional coactivator p15 (PC4) family protein (KELP) [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003173Transcriptional coactivator p15 (PC4), C-terminalPFAMPF02229PC4coord: 38..88
e-value: 3.1E-24
score: 84.4
IPR009044ssDNA-binding transcriptional regulatorGENE3D2.30.31.10Transcriptional Coactivator Pc4; Chain Acoord: 26..102
e-value: 1.2E-27
score: 97.3
IPR009044ssDNA-binding transcriptional regulatorSUPERFAMILY54447ssDNA-binding transcriptional regulator domaincoord: 37..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availablePANTHERPTHR13215:SF9BNAC09G47220D PROTEINcoord: 1..99
IPR045125RNA polymerase II transcriptional coactivator Sub1/Tcp4-likePANTHERPTHR13215RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATORcoord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g17340.1Cp4.1LG01g17340.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription regulator complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003713 transcription coactivator activity