Cp4.1LG01g17120 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g17120
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	4-diphosphocytidyl-2C-methyl-D-erythritol synthase
Location	Cp4.1LG01: 11416264 .. 11416500 (-)
RNA-Seq Expression	Cp4.1LG01g17120
Synteny	Cp4.1LG01g17120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGCGGAGGATGCATCGGCATGGTGGTGGTGAGAAGAAGAGGGAGAATAGATCCTGTTGTAGACTTGCTCGCCGACAAGGTAGATGCCGAAAGCGACGAGGGCGATGCCGAGGCCAGGAGTGGCGTGTCGGAACTGATTGGTGAGACTCGGATGCTTCCTCCACTCGTCTCTCCTCCTGAAGAACTCTCCCGTCGATCCCAAAGGCTTATTCGCCATTGCAGACTGCTCTGA

mRNA sequence

ATGGGTGGCGGAGGATGCATCGGCATGGTGGTGGTGAGAAGAAGAGGGAGAATAGATCCTGTTGTAGACTTGCTCGCCGACAAGGTAGATGCCGAAAGCGACGAGGGCGATGCCGAGGCCAGGAGTGGCGTGTCGGAACTGATTGGTGAGACTCGGATGCTTCCTCCACTCGTCTCTCCTCCTGAAGAACTCTCCCGTCGATCCCAAAGGCTTATTCGCCATTGCAGACTGCTCTGA

Coding sequence (CDS)

ATGGGTGGCGGAGGATGCATCGGCATGGTGGTGGTGAGAAGAAGAGGGAGAATAGATCCTGTTGTAGACTTGCTCGCCGACAAGGTAGATGCCGAAAGCGACGAGGGCGATGCCGAGGCCAGGAGTGGCGTGTCGGAACTGATTGGTGAGACTCGGATGCTTCCTCCACTCGTCTCTCCTCCTGAAGAACTCTCCCGTCGATCCCAAAGGCTTATTCGCCATTGCAGACTGCTCTGA

Protein sequence

MGGGGCIGMVVVRRRGRIDPVVDLLADKVDAESDEGDAEARSGVSELIGETRMLPPLVSPPEELSRRSQRLIRHCRLL

Homology

[Close]

BLAST of Cp4.1LG01g17120 vs. NCBI nr
Match: KAA0054191.1 (hypothetical protein E6C27_scaffold131G001270 [Cucumis melo var. makuwa] >TYK15069.1 hypothetical protein E5676_scaffold45G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (320), Expect = 1.28e-36
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 1  MGGGGCIGMVVVRRRGRIDPVVDLLADKVDAESDEGDAEARSGVSELIGETRMLPPLVSP 60
          MGGGGCIGMVVVRRRGRIDPVV+LLADKVDAES+EGDAEAR G++ELIG+  MLPP +SP
Sbjct: 1  MGGGGCIGMVVVRRRGRIDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISP 60

Query: 61 PEELSRRSQRLIRH 74
          PEELSRRSQRLIRH
Sbjct: 61 PEELSRRSQRLIRH 74

[Close]

BLAST of Cp4.1LG01g17120 vs. NCBI nr
Match: KAG6597022.1 (hypothetical protein SDJN03_10202, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116 bits (290), Expect = 2.07e-31
Identity = 60/76 (78.95%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 1  MGGGGCIGMVVVRRRGRIDPVVDLLADKVDAESDEGDAEARSGVSELIGETRMLPPLVSP 60
          MGGGG I MV+VR R R+DPV+ LLA+KVDAES+E DAEARSG+SELIGE RMLPPLV P
Sbjct: 1  MGGGGSISMVMVRGRRRMDPVIYLLAEKVDAESNESDAEARSGMSELIGEHRMLPPLVCP 60

Query: 61 PEELSRRSQRLIRHCR 76
          PEELS RSQRLIRHC+
Sbjct: 61 PEELSSRSQRLIRHCK 76

[Close]

BLAST of Cp4.1LG01g17120 vs. NCBI nr
Match: KYP52102.1 (hypothetical protein KK1_026012, partial [Cajanus cajan])

HSP 1 Score: 75.9 bits (185), Expect = 1.16e-15
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 12 VRRRGRIDPVVDLLADKVDAESDEGDAEARSGVSELIGETRMLPPLVSPPEELSR 66
          VRRR RI+ VVDLLAD+VDA+ DEGDAE R GV++LI + RMLPP +  PEELSR
Sbjct: 1  VRRRRRIEVVVDLLADEVDAKGDEGDAETRGGVTQLIRQHRMLPPFIPSPEELSR 55

[Close]

BLAST of Cp4.1LG01g17120 vs. NCBI nr
Match: RAL52756.1 (hypothetical protein DM860_007524 [Cuscuta australis])

HSP 1 Score: 69.3 bits (168), Expect = 1.62e-13
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 15 RGRIDPVVDLLADKVDAESDEGDAEARSGVSELIGETRMLPPLVSPPEELSRRSQRLIRH 74
          R  ID VV   A +VDAE ++GDAE R+GV+ELI + R+LPPLV PPEELSRRS+RL  +
Sbjct: 2  RRSIDLVVGGFAGEVDAEGNKGDAEPRNGVAELIRQHRVLPPLVPPPEELSRRSKRLCHY 61

[Close]

BLAST of Cp4.1LG01g17120 vs. NCBI nr
Match: KAG4941981.1 (hypothetical protein JHK85_046627 [Glycine max] >KAG5101125.1 hypothetical protein JHK84_046094 [Glycine max])

HSP 1 Score: 74.3 bits (181), Expect = 2.13e-13
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 14 RRGRIDPVVDLLADKVDAESDEGDAEARSGVSELIGETRMLPPLVSPPEELSR 66
          R G I+P+VDL AD+VD E D+GDA+AR GV+ELIGE RMLPP +  PEELS+
Sbjct: 2  RIGSIEPIVDLFADEVDTEGDDGDAKARGGVAELIGEHRMLPPCIPSPEELSK 54

[Close]

BLAST of Cp4.1LG01g17120 vs. ExPASy TrEMBL
Match: A0A5A7UKX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G001210 PE=4 SV=1)

HSP 1 Score: 127 bits (320), Expect = 6.20e-37
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 1  MGGGGCIGMVVVRRRGRIDPVVDLLADKVDAESDEGDAEARSGVSELIGETRMLPPLVSP 60
          MGGGGCIGMVVVRRRGRIDPVV+LLADKVDAES+EGDAEAR G++ELIG+  MLPP +SP
Sbjct: 1  MGGGGCIGMVVVRRRGRIDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISP 60

Query: 61 PEELSRRSQRLIRH 74
          PEELSRRSQRLIRH
Sbjct: 61 PEELSRRSQRLIRH 74

[Close]

BLAST of Cp4.1LG01g17120 vs. ExPASy TrEMBL
Match: A0A0A0KP64 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G528950 PE=4 SV=1)

HSP 1 Score: 124 bits (312), Expect = 1.03e-35
Identity = 64/74 (86.49%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1  MGGGGCIGMVVVRRRGRIDPVVDLLADKVDAESDEGDAEARSGVSELIGETRMLPPLVSP 60
          MGGGGCIGMVVVRRR RIDPVV+LLADKVDAES+EGDAEARSGV+ELIG+  MLPP +SP
Sbjct: 1  MGGGGCIGMVVVRRRRRIDPVVNLLADKVDAESNEGDAEARSGVTELIGKHGMLPPFISP 60

Query: 61 PEELSRRSQRLIRH 74
          PEELSRRSQRLI H
Sbjct: 61 PEELSRRSQRLIGH 74

[Close]

BLAST of Cp4.1LG01g17120 vs. ExPASy TrEMBL
Match: A0A151SBB2 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_026012 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.62e-16
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 12 VRRRGRIDPVVDLLADKVDAESDEGDAEARSGVSELIGETRMLPPLVSPPEELSR 66
          VRRR RI+ VVDLLAD+VDA+ DEGDAE R GV++LI + RMLPP +  PEELSR
Sbjct: 1  VRRRRRIEVVVDLLADEVDAKGDEGDAETRGGVTQLIRQHRMLPPFIPSPEELSR 55

[Close]

BLAST of Cp4.1LG01g17120 vs. ExPASy TrEMBL
Match: A0A328E5M9 (Uncharacterized protein OS=Cuscuta australis OX=267555 GN=DM860_007524 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 7.84e-14
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 15 RGRIDPVVDLLADKVDAESDEGDAEARSGVSELIGETRMLPPLVSPPEELSRRSQRLIRH 74
          R  ID VV   A +VDAE ++GDAE R+GV+ELI + R+LPPLV PPEELSRRS+RL  +
Sbjct: 2  RRSIDLVVGGFAGEVDAEGNKGDAEPRNGVAELIRQHRVLPPLVPPPEELSRRSKRLCHY 61

[Close]

BLAST of Cp4.1LG01g17120 vs. ExPASy TrEMBL
Match: A0A371FUN4 (4-diphosphocytidyl-2C-methyl-D-erythritol synthase (Fragment) OS=Mucuna pruriens OX=157652 GN=ISPD PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.30e-13
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 12 VRRRGRIDPVVDLLADKVDAESDEGDAEARSGVSELIGETRMLPPLVSPPEELSRRSQR 70
          VRRR RI+ VVDL  D+V+A+ DEGDA+AR GV+ELI + RMLPP + PPEEL R   R
Sbjct: 17 VRRRRRIEAVVDLFTDEVEAKGDEGDAKARGGVTELIRQHRMLPPRIPPPEELCRMFSR 75

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g17120 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g17120 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054191.1	1.28e-36	86.49	hypothetical protein E6C27_scaffold131G001270 [Cucumis melo var. makuwa] >TYK150...	[more]
KAG6597022.1	2.07e-31	78.95	hypothetical protein SDJN03_10202, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KYP52102.1	1.16e-15	69.09	hypothetical protein KK1_026012, partial [Cajanus cajan]	[more]
RAL52756.1	1.62e-13	61.67	hypothetical protein DM860_007524 [Cuscuta australis]	[more]
KAG4941981.1	2.13e-13	66.04	hypothetical protein JHK85_046627 [Glycine max] >KAG5101125.1 hypothetical prote...	[more]

BLAST of Cp4.1LG01g17120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UKX3	6.20e-37	86.49	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KP64	1.03e-35	86.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G528950 PE=4 SV=1	[more]
A0A151SBB2	5.62e-16	69.09	Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_026012 PE=4 S...	[more]
A0A328E5M9	7.84e-14	61.67	Uncharacterized protein OS=Cuscuta australis OX=267555 GN=DM860_007524 PE=4 SV=1	[more]
A0A371FUN4	2.30e-13	62.71	4-diphosphocytidyl-2C-methyl-D-erythritol synthase (Fragment) OS=Mucuna pruriens...	[more]

BLAST of Cp4.1LG01g17120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g17120.1	Cp4.1LG01g17120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0050518	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity