Cp4.1LG01g16930 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g16930
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptioncalmodulin-2/4-like
LocationCp4.1LG01: 10930468 .. 10930836 (+)
RNA-Seq ExpressionCp4.1LG01g16930
SyntenyCp4.1LG01g16930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCGTGAAAGTCATTAGTATAAAATACTAATATGGTATTAAAGGTTTGTTCTATCTTTAAACTTTCTATGCAAACAAATATAGCGTTGGTATAACAACGTTTATCCTCAAACTTGAGTATAACAATGTTTATCCCTAAACTTCAAGCTTCCATGCTAAGTAGGAAACAAGTGAGGTGATCACGAAGTATACAACAAATGGTGATGATGTTCAACTAAAATCTTTGATTGGCATTGCTCGAGCTTCAACTCAAGTCAACAATCAAGGCATGGCACCAAAATTTTTTAGAGATAACAAGAATGTCGGGCCCAAGCTTTATTCAAATACTCACCTAAAAACATCTAATATGCAATTTAGTCGAGAGTAG

mRNA sequence

ATGCCCGAAACAAGTGAGGTGATCACGAAGTATACAACAAATGGTGATGATGTTCAACTAAAATCTTTGATTGGCATTGCTCGAGCTTCAACTCAAGTCAACAATCAAGGCATGGCACCAAAATTTTTTAGAGATAACAAGAATGTCGGGCCCAAGCTTTATTCAAATACTCACCTAAAAACATCTAATATGCAATTTAGTCGAGAGTAG

Coding sequence (CDS)

ATGCCCGAAACAAGTGAGGTGATCACGAAGTATACAACAAATGGTGATGATGTTCAACTAAAATCTTTGATTGGCATTGCTCGAGCTTCAACTCAAGTCAACAATCAAGGCATGGCACCAAAATTTTTTAGAGATAACAAGAATGTCGGGCCCAAGCTTTATTCAAATACTCACCTAAAAACATCTAATATGCAATTTAGTCGAGAGTAG

Protein sequence

MPETSEVITKYTTNGDDVQLKSLIGIARASTQVNNQGMAPKFFRDNKNVGPKLYSNTHLKTSNMQFSRE
Homology
BLAST of Cp4.1LG01g16930 vs. NCBI nr
Match: XP_022930019.1 (calcium-binding protein CML38-like [Cucurbita moschata])

HSP 1 Score: 103 bits (257), Expect = 3.24e-26
Identity = 52/67 (77.61%), Postives = 56/67 (83.58%), Query Frame = 0

Query: 3  ETSEVITKYTTNGDDVQLKSLIGIARASTQVNNQGMAPKFFRDNKNVGPKLYSNTHLKTS 62
          E SE+I K T NGD+VQLK+  GIARASTQVNNQGM P+ FRDNKNVGPKL SNT LK S
Sbjct: 14 EASEMIKKRTRNGDNVQLKAFSGIARASTQVNNQGMVPEIFRDNKNVGPKLSSNTQLKAS 73

Query: 63 NMQFSRE 69
          NMQFSRE
Sbjct: 74 NMQFSRE 80

BLAST of Cp4.1LG01g16930 vs. NCBI nr
Match: XP_023530739.1 (calmodulin-2/4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102 bits (254), Expect = 9.22e-26
Identity = 51/67 (76.12%), Postives = 55/67 (82.09%), Query Frame = 0

Query: 3  ETSEVITKYTTNGDDVQLKSLIGIARASTQVNNQGMAPKFFRDNKNVGPKLYSNTHLKTS 62
          E SE+I K T NGD+VQLK+  GIARASTQVNNQGM P+  RDNKNVGPK  SNTHLK S
Sbjct: 14 EASEMIKKNTRNGDNVQLKAFNGIARASTQVNNQGMVPEILRDNKNVGPKFSSNTHLKAS 73

Query: 63 NMQFSRE 69
          NMQFSRE
Sbjct: 74 NMQFSRE 80

BLAST of Cp4.1LG01g16930 vs. NCBI nr
Match: XP_023513331.1 (calmodulin-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 100 bits (248), Expect = 7.09e-25
Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 0

Query: 3  ETSEVITKYTTNGDDVQLKSLIGIARASTQVNNQGMAPKFFRDNKNVGPKLYSNTHLKTS 62
          E SE+I KYT NGD+VQLK+  GIA+ASTQVNNQGM  +  RDNKNVGPKL SNT LK+S
Sbjct: 12 EASEMIKKYTRNGDNVQLKAFRGIAQASTQVNNQGMVSEILRDNKNVGPKLSSNTQLKSS 71

Query: 63 NMQFSRE 69
          NMQFSRE
Sbjct: 72 NMQFSRE 78

BLAST of Cp4.1LG01g16930 vs. NCBI nr
Match: XP_022930012.1 (calmodulin-2/4-like [Cucurbita moschata])

HSP 1 Score: 100 bits (248), Expect = 7.48e-25
Identity = 50/67 (74.63%), Postives = 54/67 (80.60%), Query Frame = 0

Query: 3  ETSEVITKYTTNGDDVQLKSLIGIARASTQVNNQGMAPKFFRDNKNVGPKLYSNTHLKTS 62
          E SE+I K T NGD+VQLK+  GIARASTQVNNQ M P+  RDNKNVGPK  SNTHLK S
Sbjct: 14 EASEMIKKSTRNGDNVQLKAFNGIARASTQVNNQSMVPEILRDNKNVGPKFSSNTHLKAS 73

Query: 63 NMQFSRE 69
          NMQFSRE
Sbjct: 74 NMQFSRE 80

BLAST of Cp4.1LG01g16930 vs. NCBI nr
Match: XP_023530761.1 (calmodulin-like protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 98.2 bits (243), Expect = 2.78e-24
Identity = 50/67 (74.63%), Postives = 54/67 (80.60%), Query Frame = 0

Query: 3  ETSEVITKYTTNGDDVQLKSLIGIARASTQVNNQGMAPKFFRDNKNVGPKLYSNTHLKTS 62
          E SE+I K T NGD+VQLK+  GIARASTQVNNQGM  + FRDNKNVGPKL SNT LK S
Sbjct: 14 EASEMIKKCTRNGDNVQLKAFSGIARASTQVNNQGMVSEIFRDNKNVGPKLSSNTQLKAS 73

Query: 63 NMQFSRE 69
           MQFSRE
Sbjct: 74 TMQFSRE 80

BLAST of Cp4.1LG01g16930 vs. ExPASy TrEMBL
Match: A0A6J1EQF3 (calcium-binding protein CML38-like OS=Cucurbita moschata OX=3662 GN=LOC111436460 PE=4 SV=1)

HSP 1 Score: 103 bits (257), Expect = 1.57e-26
Identity = 52/67 (77.61%), Postives = 56/67 (83.58%), Query Frame = 0

Query: 3  ETSEVITKYTTNGDDVQLKSLIGIARASTQVNNQGMAPKFFRDNKNVGPKLYSNTHLKTS 62
          E SE+I K T NGD+VQLK+  GIARASTQVNNQGM P+ FRDNKNVGPKL SNT LK S
Sbjct: 14 EASEMIKKRTRNGDNVQLKAFSGIARASTQVNNQGMVPEIFRDNKNVGPKLSSNTQLKAS 73

Query: 63 NMQFSRE 69
          NMQFSRE
Sbjct: 74 NMQFSRE 80

BLAST of Cp4.1LG01g16930 vs. ExPASy TrEMBL
Match: A0A6J1EP72 (calmodulin-2/4-like OS=Cucurbita moschata OX=3662 GN=LOC111436455 PE=4 SV=1)

HSP 1 Score: 100 bits (248), Expect = 3.62e-25
Identity = 50/67 (74.63%), Postives = 54/67 (80.60%), Query Frame = 0

Query: 3  ETSEVITKYTTNGDDVQLKSLIGIARASTQVNNQGMAPKFFRDNKNVGPKLYSNTHLKTS 62
          E SE+I K T NGD+VQLK+  GIARASTQVNNQ M P+  RDNKNVGPK  SNTHLK S
Sbjct: 14 EASEMIKKSTRNGDNVQLKAFNGIARASTQVNNQSMVPEILRDNKNVGPKFSSNTHLKAS 73

Query: 63 NMQFSRE 69
          NMQFSRE
Sbjct: 74 NMQFSRE 80

BLAST of Cp4.1LG01g16930 vs. ExPASy TrEMBL
Match: A0A6J1JZF1 (calmodulin-2/4-like OS=Cucurbita maxima OX=3661 GN=LOC111490224 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.85e-21
Identity = 46/67 (68.66%), Postives = 50/67 (74.63%), Query Frame = 0

Query: 3  ETSEVITKYTTNGDDVQLKSLIGIARASTQVNNQGMAPKFFRDNKNVGPKLYSNTHLKTS 62
          E SE+I KY  NGDDVQLKS  GI R STQVNNQG   +  +DNKNVG KL SNTH KTS
Sbjct: 14 EASEMIKKYPRNGDDVQLKSFGGITRDSTQVNNQGKISEILKDNKNVGLKLSSNTHPKTS 73

Query: 63 NMQFSRE 69
           +QFSRE
Sbjct: 74 KLQFSRE 80

BLAST of Cp4.1LG01g16930 vs. ExPASy TrEMBL
Match: A0A6J1EP67 (uncharacterized protein LOC111436449 OS=Cucurbita moschata OX=3662 GN=LOC111436449 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.25e-20
Identity = 45/67 (67.16%), Postives = 50/67 (74.63%), Query Frame = 0

Query: 3  ETSEVITKYTTNGDDVQLKSLIGIARASTQVNNQGMAPKFFRDNKNVGPKLYSNTHLKTS 62
          E SE+I KY  NGDDVQLKS   IAR STQ+NNQG  P+  +DNKNVG KL SN H KTS
Sbjct: 14 EASELIKKYPRNGDDVQLKSFSDIARDSTQLNNQGKIPEILKDNKNVGLKLSSNAHPKTS 73

Query: 63 NMQFSRE 69
           +QFSRE
Sbjct: 74 KLQFSRE 80

BLAST of Cp4.1LG01g16930 vs. ExPASy TrEMBL
Match: A0A6J1EQE8 (calmodulin-like OS=Cucurbita moschata OX=3662 GN=LOC111436456 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.86e-19
Identity = 43/67 (64.18%), Postives = 49/67 (73.13%), Query Frame = 0

Query: 3  ETSEVITKYTTNGDDVQLKSLIGIARASTQVNNQGMAPKFFRDNKNVGPKLYSNTHLKTS 62
          E SE+I KY  NGD VQLKS  GI R STQ+NNQG  P+  +DNKNVG KL SNTH KT 
Sbjct: 14 EASELIKKYPRNGDGVQLKSFGGITRDSTQLNNQGKIPEILKDNKNVGLKLSSNTHPKTP 73

Query: 63 NMQFSRE 69
           +QF+RE
Sbjct: 74 KLQFTRE 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022930019.13.24e-2677.61calcium-binding protein CML38-like [Cucurbita moschata][more]
XP_023530739.19.22e-2676.12calmodulin-2/4-like [Cucurbita pepo subsp. pepo][more]
XP_023513331.17.09e-2574.63calmodulin-like [Cucurbita pepo subsp. pepo][more]
XP_022930012.17.48e-2574.63calmodulin-2/4-like [Cucurbita moschata][more]
XP_023530761.12.78e-2474.63calmodulin-like protein 1 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
A0A6J1EQF31.57e-2677.61calcium-binding protein CML38-like OS=Cucurbita moschata OX=3662 GN=LOC111436460... [more]
A0A6J1EP723.62e-2574.63calmodulin-2/4-like OS=Cucurbita moschata OX=3662 GN=LOC111436455 PE=4 SV=1[more]
A0A6J1JZF18.85e-2168.66calmodulin-2/4-like OS=Cucurbita maxima OX=3661 GN=LOC111490224 PE=4 SV=1[more]
A0A6J1EP671.25e-2067.16uncharacterized protein LOC111436449 OS=Cucurbita moschata OX=3662 GN=LOC1114364... [more]
A0A6J1EQE82.86e-1964.18calmodulin-like OS=Cucurbita moschata OX=3662 GN=LOC111436456 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g16930.1Cp4.1LG01g16930.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding