Cp4.1LG01g16560 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g16560
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	B-like cyclin
Location	Cp4.1LG01: 10352324 .. 10355736 (+)
RNA-Seq Expression	Cp4.1LG01g16560
Synteny	Cp4.1LG01g16560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAGGCCTAGGCGTGTTTGTTGTATCGTAGACATTGGCATGCAATGCAACTATGCGATGAAGGGAAGCAGAACAACGATGGAGAGTGAGAACTTACCGATTCTGAGAATTCGCGTCGTCAAATTCCTTATTCAATCTGCTCATGTGAATCTTCTTTCACTCCCAACAATTTTCAGTTCTAGAAGGCCACAAGCAGCAAATTTCACAGAATCTTTTGGAAATTTCTCTTCTCCAAATTTCAGTTCTAGTTTTACCTATACTTCTTTCGTCCTCTACTCACTTACTTTTGCTTCTGGTTTGAATCAATTTTCTTGGTAGGATCTCGAAGTGGCTCCGATCGTCAAATACTCTGCGTTGTCACTTTTCGCTGATAGATTCTACCCATCGCTTTCTGGGTAATTTTTAGCTCTTTTTGATTCTTGATGCATTCAATTTTGGAAATATTTAGTTCAATAAGCAGTATCTTGTCGAATGAGTGCACAATATGATTATAGGAATGTGAAGGGTATCATCCAATGGAGCAATATTATCCAATTTTAGTTTGATTTTACTGATATTGCTGGTTTGATGTCATGGACGTCAGTGTTGTTTGAATTAGGATCGGAATTGTTATCATTTCCTTATGAACAATTGGAGAAATTCTATATTTATTACGATTTTCTATTTCAGTGCCCGTCTTTGCTTTTGAGAAGATTGCTACTCATCGAGTGATAGTTTTACCAGGGCTGTCTTATGAAATTTTCTATCTCGTTTAGATGTGAGTTAGATGTTGTTTAAGCACGTTTGGAGGAAATACTAATTTAGTGCTTTTTAGCGTTCTAGACTTTTCAAGATCACTTTTGGTTGTCGAACGAAATGCTAGGAAAATTTAAGAAGTACTTTTGATTGGTTGAAGTTACTTTTCATCCTTCCATAAGTCATCCTAAACTCATACTCACCTTTTAGTTGCTATTTGCATCAAAAGAATCACCAGCAGCAATGCCTCAAGAAATTGGCTTCTGCAACCAATCACAGAGAGCAATTTGCAGTTATTTGCACTTGTTTCCTTATGGATATCTAGCAAAGTGGGTTTTTCTTTCTCCTCTTTCTGAAGATGAGTGCCTTACTTTTTCATGTGATTCAACTATACAAATTCTTTTGCAGCTGCACACTTCTCATCCTCTTTCTATAAAACTTCTGAAATCTTTTGGGGATAAGATGATTAAGGAACAACATTTCATGACCCGGGATTTATTGGATGCAGTAAGTTGCTGTTTCCATAGTGGTTTTAGAATTGCTTTCTTGCAGTCATATCGGCAATTACTGATGATAATGTTCTGTAGGAGGTCATATTCATGCAGGTATTTCTCATAAACCAAAGATGTTTCTTTCCTCATTTTGGTTGTGTCCTGATGATATATGTTTATCTTCTATAGATATTGAAGTTTGAGATTGGTACTGCAAATATCACTTTTGTATTTCTTGAGGAACTTCTTATTCAATTCAAGTAAGATCTTTTGCTGTCTCACTCAAATCAGGCTGTCATTTTAGTCTTGGGTAATTACTATCAGATTGTTCTTGGCTTCTTCTTAGTTTGTCTCTTCCTGGTACTAAATTCAGGGAAGTAGCGAAAGTTGGGGAGCTTGTGAACTGGGAAGCATGCATGGATGTAATGGATCTTCTTTATGAAAAAGAAGAGACATCTGTGTCTTACAGTTCTCCTTGTTCTTTAGCTGCTGCCATCTTGGTATGTCTTTTTAGGAGTGAGATTAGAACATTTCTAATTATTCACTAACTTTCTCTCTCCTTCTCATGTTTGTAGGTGGCTTCATATCTCATCACTGTTCCAGTGCAAGAATGGGAATTTCCAGTTCTTCCCTGGGGTAAGTTGCATTTACAGTTCATCTCTCCTTTTTATTAAGCATGGATAGAACTTTGAAAGTAAGAAAAAAAGTTGAGCTATCTTTATGAAACACTTCTCTGATCAAAGTTGAGGATTTTGCTGATATAAGCTTAAATTCTCAAGTATAACACAAGTGGGAACTCTGAGTGCGGAATGTTTTTCTGTCTCTCTCAAGTCAGAATGGAGAAGGTTTCATTGAACTGGGAGTGGAAGGAGTAAGAACGACATAGATTCACTAGAGAATGAGAATGGGGAAACATTGCAAGGGGGGTTAGGAGATTAAGGAGGAGATTATCTCCTTTTTCTCTTCTTTTTATGCCCCAGTTGTTTCTCATAGTTTTTTTTTTTTTTCTTAAAGAAGATTAGATTGGTATCCTATATCTGATACTGATAGGGTTGAGAGACTCCCCATTTAGTTTATAGGAGATTTTGTTTGATGAGAGACAATTCATTAATATTTGAAATTTACGCTTACAATTTACATGTTTAGATATACTTTAAAACACTCGGTCCACTCCAAAAGAGAATTTTAGAATAATAACTCGAATACTATGAACTTCAATATGTTTAAACATTTAAGTCGTCAAATTCACACACAATGTTTTTGCGTTTGCCTTTTTCTCAATGGTTCGGATGTAGGTTCCACTGATATAGCTAATAAAAGGAATAGAAAGGGCGCAAGGCTCAAAATCAACTAAAATGCCCCTTTGAGGGAAGGAAATAAAACTCTCATCTCATAGGATATCTAAGATGAACTTTGATTGATTGCCTCTCTTGGGCATGAGGTTCAAATTCAAGATGTCTGAATTGTCTGAGCTAGATCTAACTTTCTTCGTTCCATATTGTAATACAGTACTGAATGTTATACTAGTTTGGAGCAAAAATAGTGAATCTATCATCATCGTTTTCTTGTATTGGAGAATATTAGCAGTGAATCAGTGATGACCAAATGTAATGGAACACAGGAACTAGTGGTAGTTTAACTTACTCTGTTGTTGTTTGTTGTTGAGTGAAGCTCATAGGTTGTGTTAAAACTAATTCGTAAATTGATTTACTCGTATAATCGCAGTCCAGTTCGTAATGCCATTCATAGAAGAAGATATTGTAGAACAAATCAGAGGCATTCTGCTTCACGTTTTAGAGACTGATACTGATTGCTAGAGAAGTAGCAGAGGCTTGAAAACAGAGCAGCTCTTAATCATGAGAAGTAAGTGCTGTTGCTATTTTGTGCTATCTTTTTGGGTTAAAAGTTGATGTTCCTGCCAGGAAGAAACTGAAATGCATTGTAGCTGTGGAAGCCGTACAAATAGAGAAATAGAATCAGCCTACCAAAGTGGGTAAATGTTTTTTTAGCAACAACATATGATCTAAGTCTTAAAAGTAGAGCTGTTGAAATTTTTTAAATTGGGCGTTTTTTAGCATAATAATTCTTTTACGTTAATATGCTTATTTACCAATTTTTTATTCATTTTCTTGGTTTGATTGTTGTAAGTTTGGCTGATAAAATCTTAAACTTAAAAGTATTTAATA

mRNA sequence

CAAAAGGCCTAGGCGTGTTTGTTGTATCGTAGACATTGGCATGCAATGCAACTATGCGATGAAGGGAAGCAGAACAACGATGGAGAGTGAGAACTTACCGATTCTGAGAATTCGCGTCGTCAAATTCCTTATTCAATCTGCTCATGATCTCGAAGTGGCTCCGATCGTCAAATACTCTGCGTTGTCACTTTTCGCTGATAGATTCTACCCATCGCTTTCTGGTTGCTATTTGCATCAAAAGAATCACCAGCAGCAATGCCTCAAGAAATTGGCTTCTGCAACCAATCACAGAGAGCAATTTGCAGTTATTTGCACTTGTTTCCTTATGGATATCTAGCAAACTGCACACTTCTCATCCTCTTTCTATAAAACTTCTGAAATCTTTTGGGGATAAGATGATTAAGGAACAACATTTCATGACCCGGGATTTATTGGATGCAGAGGTCATATTCATGCAGATATTGAAGTTTGAGATTGGTACTGCAAATATCACTTTTGTATTTCTTGAGGAACTTCTTATTCAATTCAAGGAAGTAGCGAAAGTTGGGGAGCTTGTGAACTGGGAAGCATGCATGGATGTAATGGATCTTCTTTATGAAAAAGAAGAGACATCTGTGTCTTACAGTTCTCCTTGTTCTTTAGCTGCTGCCATCTTGGTGGCTTCATATCTCATCACTGTTCCAGTGCAAGAATGGGAATTTCCAGTTCTTCCCTGGGTCCAGTTCGTAATGCCATTCATAGAAGAAGATATTGTAGAACAAATCAGAGGCATTCTGCTTCACGTTTTAGAGACTGATACTGATTGCTAGAGAAGTAGCAGAGGCTTGAAAACAGAGCAGCTCTTAATCATGAGAAGTAAGTGCTGTTGCTATTTTGTGCTATCTTTTTGGGTTAAAAGTTGATGTTCCTGCCAGGAAGAAACTGAAATGCATTGTAGCTGTGGAAGCCGTACAAATAGAGAAATAGAATCAGCCTACCAAAGTGGGTAAATGTTTTTTTAGCAACAACATATGATCTAAGTCTTAAAAGTAGAGCTGTTGAAATTTTTTAAATTGGGCGTTTTTTAGCATAATAATTCTTTTACGTTAATATGCTTATTTACCAATTTTTTATTCATTTTCTTGGTTTGATTGTTGTAAGTTTGGCTGATAAAATCTTAAACTTAAAAGTATTTAATA

Coding sequence (CDS)

ATGATCTCGAAGTGGCTCCGATCGTCAAATACTCTGCGTTGTCACTTTTCGCTGATAGATTCTACCCATCGCTTTCTGGTTGCTATTTGCATCAAAAGAATCACCAGCAGCAATGCCTCAAGAAATTGGCTTCTGCAACCAATCACAGAGAGCAATTTGCAGTTATTTGCACTTGTTTCCTTATGGATATCTAGCAAACTGCACACTTCTCATCCTCTTTCTATAAAACTTCTGAAATCTTTTGGGGATAAGATGATTAAGGAACAACATTTCATGACCCGGGATTTATTGGATGCAGAGGTCATATTCATGCAGATATTGAAGTTTGAGATTGGTACTGCAAATATCACTTTTGTATTTCTTGAGGAACTTCTTATTCAATTCAAGGAAGTAGCGAAAGTTGGGGAGCTTGTGAACTGGGAAGCATGCATGGATGTAATGGATCTTCTTTATGAAAAAGAAGAGACATCTGTGTCTTACAGTTCTCCTTGTTCTTTAGCTGCTGCCATCTTGGTGGCTTCATATCTCATCACTGTTCCAGTGCAAGAATGGGAATTTCCAGTTCTTCCCTGGGTCCAGTTCGTAATGCCATTCATAGAAGAAGATATTGTAGAACAAATCAGAGGCATTCTGCTTCACGTTTTAGAGACTGATACTGATTGCTAG

Protein sequence

MISKWLRSSNTLRCHFSLIDSTHRFLVAICIKRITSSNASRNWLLQPITESNLQLFALVSLWISSKLHTSHPLSIKLLKSFGDKMIKEQHFMTRDLLDAEVIFMQILKFEIGTANITFVFLEELLIQFKEVAKVGELVNWEACMDVMDLLYEKEETSVSYSSPCSLAAAILVASYLITVPVQEWEFPVLPWVQFVMPFIEEDIVEQIRGILLHVLETDTDC

Homology

[Close]

BLAST of Cp4.1LG01g16560 vs. ExPASy Swiss-Prot
Match: Q9C5X2 (Cyclin-J18 OS=Arabidopsis thaliana OX=3702 GN=CYCJ18 PE=2 SV=2)

HSP 1 Score: 224.9 bits (572), Expect = 8.7e-58
Identity = 113/187 (60.43%), Postives = 147/187 (78.61%), Query Frame = 0


Query: 33  RITSSNASRNWLLQPITESNLQLFALVSLWISSKLHTSHPLSIKLLKSFGDKMIKEQHFM 92
           R      + +WLLQP+ ESNLQLF L+S+WIS K+H +  LS+  LKSFGDK+I EQ FM
Sbjct: 47  RFLQKKKAEHWLLQPLNESNLQLFVLISIWISCKMHCTRGLSVHSLKSFGDKVITEQLFM 106

Query: 93  TRDLLDAEVIFMQILKFEIGTANITFVFLEELLIQFKEVAKVGELVNWEACMDVMDLLYE 152
            RD LDAE++F+++LKFEIGT NI +  LE+LLIQFKEVAKVGE +N+EACMD+MDLLYE
Sbjct: 107 VRDFLDAELVFLKVLKFEIGTLNIAYTRLEDLLIQFKEVAKVGEQLNFEACMDMMDLLYE 166

Query: 153 KEETSVSYSSPCSLAAAILVASYLITVPVQEWEFPVLPWVQFVMPFIEEDIVEQIRGILL 212
           KE+TS+ Y S  SLAA+ILV+SY+ITVP Q++EFP+LPWV+ V    E ++VE +  IL 
Sbjct: 167 KEDTSLLYQSSKSLAASILVSSYIITVPKQQYEFPILPWVKMVTNKEEREVVELVEYILA 226

Query: 213 HVLETDT 220
           HVL +++
Sbjct: 227 HVLYSNS 233

[Close]

BLAST of Cp4.1LG01g16560 vs. ExPASy Swiss-Prot
Match: Q0DTM7 (Cyclin-J18-like OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0237900 PE=3 SV=2)

HSP 1 Score: 208.8 bits (530), Expect = 6.4e-53
Identity = 92/180 (51.11%), Postives = 143/180 (79.44%), Query Frame = 0


Query: 39  ASRNWLLQPITESNLQLFALVSLWISSKLHTSHPLSIKLLKSFGDKMIKEQHFMTRDLLD 98
           A  +WLL+P+ +SNL+LFALV++WI+SK+H   PLS+K LK+ GD++I +QHF  RD  +
Sbjct: 70  AVTSWLLEPLRDSNLELFALVAVWIASKIHELKPLSVKSLKALGDRIIADQHFTCRDFAN 129

Query: 99  AEVIFMQILKFEIGTANITFVFLEELLIQFKEVAKVGELVNWEACMDVMDLLYEKEETSV 158
           AE++FM+++++ IG+ NI F +LEELL+QF+E++K+G+L+N + CM+++D+LYE E++S 
Sbjct: 130 AELVFMEVVEYNIGSLNIAFTYLEELLVQFREISKIGDLLNMDVCMEILDILYETEDSSW 189

Query: 159 SYSSPCSLAAAILVASYLITVPVQEWEFPVLPWVQFVMPFIEEDIVEQIRGILLHVLETD 218
            ++SPC LAA+ LV +Y I+VP Q WEFP+LPWV F   + EE+I++ +  IL+HVL+ D
Sbjct: 190 LFNSPCQLAASALVTAYAISVPKQRWEFPILPWVTFTTSYDEEEIMKVVLTILMHVLKPD 249

[Close]

BLAST of Cp4.1LG01g16560 vs. NCBI nr
Match: XP_023525674.1 (cyclin-J18 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 430 bits (1105), Expect = 1.18e-151
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MISKWLRSSNTLRCHFSLIDSTHRFLVAICIKRITSSNASRNWLLQPITESNLQLFALVS 60
           MISKWLRSSNTLRCHFSLIDSTHRFLVAICIKRITSSNASRNWLLQPITESNLQLFALVS
Sbjct: 1   MISKWLRSSNTLRCHFSLIDSTHRFLVAICIKRITSSNASRNWLLQPITESNLQLFALVS 60

Query: 61  LWISSKLHTSHPLSIKLLKSFGDKMIKEQHFMTRDLLDAEVIFMQILKFEIGTANITFVF 120
           LWISSKLHTSHPLSIKLLKSFGDKMIKEQHFMTRDLLDAEVIFMQILKFEIGTANITFVF
Sbjct: 61  LWISSKLHTSHPLSIKLLKSFGDKMIKEQHFMTRDLLDAEVIFMQILKFEIGTANITFVF 120

Query: 121 LEELLIQFKEVAKVGELVNWEACMDVMDLLYEKEETSVSYSSPCSLAAAILVASYLITVP 180
           LEELLIQFKEVAKVGELVNWEACMDVMDLLYEKEETSVSYSSPCSLAAAILVASYLITVP
Sbjct: 121 LEELLIQFKEVAKVGELVNWEACMDVMDLLYEKEETSVSYSSPCSLAAAILVASYLITVP 180

Query: 181 VQEWEFPVLPWVQFVMPFIEEDIVEQIRGILLHVLETDTDC 221
           VQEWEFPVLPWVQFVMPFIEEDIVEQIRGILLHVLETDTDC
Sbjct: 181 VQEWEFPVLPWVQFVMPFIEEDIVEQIRGILLHVLETDTDC 221

[Close]

BLAST of Cp4.1LG01g16560 vs. NCBI nr
Match: XP_022998535.1 (cyclin-J18 isoform X2 [Cucurbita maxima])

HSP 1 Score: 411 bits (1057), Expect = 2.44e-144
Identity = 212/221 (95.93%), Postives = 216/221 (97.74%), Query Frame = 0


Query: 1   MISKWLRSSNTLRCHFSLIDSTHRFLVAICIKRITSSNASRNWLLQPITESNLQLFALVS 60
           MISKWLRSSNTLRC FSLIDSTHRFLVAICIKRITS NASRNWLLQPITESNLQLFALVS
Sbjct: 1   MISKWLRSSNTLRCRFSLIDSTHRFLVAICIKRITSRNASRNWLLQPITESNLQLFALVS 60

Query: 61  LWISSKLHTSHPLSIKLLKSFGDKMIKEQHFMTRDLLDAEVIFMQILKFEIGTANITFVF 120
           LWISSKLHTSHPLS+KLLKSFGDKMIKEQHFMTRDLLDAEVIFMQILKFEIGTANITFVF
Sbjct: 61  LWISSKLHTSHPLSVKLLKSFGDKMIKEQHFMTRDLLDAEVIFMQILKFEIGTANITFVF 120

Query: 121 LEELLIQFKEVAKVGELVNWEACMDVMDLLYEKEETSVSYSSPCSLAAAILVASYLITVP 180
           LEELLIQFKEVAKVGELVNWEACMDVMDLLYEKEETSVSYSSP SLAAAILVASYLITVP
Sbjct: 121 LEELLIQFKEVAKVGELVNWEACMDVMDLLYEKEETSVSYSSPRSLAAAILVASYLITVP 180

Query: 181 VQEWEFPVLPWVQFVMPFIEEDIVEQIRGILLHVLETDTDC 221
           VQEWEFPV+PWVQFVMPFIEEDIVEQ+R ILL VLET+TDC
Sbjct: 181 VQEWEFPVIPWVQFVMPFIEEDIVEQVRDILLQVLETETDC 221

[Close]

BLAST of Cp4.1LG01g16560 vs. NCBI nr
Match: XP_023525659.1 (cyclin-J18 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 363 bits (931), Expect = 1.04e-124
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 34  ITSSNASRNWLLQPITESNLQLFALVSLWISSKLHTSHPLSIKLLKSFGDKMIKEQHFMT 93
           ITSSNASRNWLLQPITESNLQLFALVSLWISSKLHTSHPLSIKLLKSFGDKMIKEQHFMT
Sbjct: 62  ITSSNASRNWLLQPITESNLQLFALVSLWISSKLHTSHPLSIKLLKSFGDKMIKEQHFMT 121

Query: 94  RDLLDAEVIFMQILKFEIGTANITFVFLEELLIQFKEVAKVGELVNWEACMDVMDLLYEK 153
           RDLLDAEVIFMQILKFEIGTANITFVFLEELLIQFKEVAKVGELVNWEACMDVMDLLYEK
Sbjct: 122 RDLLDAEVIFMQILKFEIGTANITFVFLEELLIQFKEVAKVGELVNWEACMDVMDLLYEK 181

Query: 154 EETSVSYSSPCSLAAAILVASYLITVPVQEWEFPVLPWVQFVMPFIEEDIVEQIRGILLH 213
           EETSVSYSSPCSLAAAILVASYLITVPVQEWEFPVLPWVQFVMPFIEEDIVEQIRGILLH
Sbjct: 182 EETSVSYSSPCSLAAAILVASYLITVPVQEWEFPVLPWVQFVMPFIEEDIVEQIRGILLH 241

Query: 214 VLETDTDC 221
           VLETDTDC
Sbjct: 242 VLETDTDC 249

[Close]

BLAST of Cp4.1LG01g16560 vs. NCBI nr
Match: XP_022957558.1 (cyclin-J18 isoform X1 [Cucurbita moschata] >XP_022957559.1 cyclin-J18 isoform X1 [Cucurbita moschata] >XP_022957560.1 cyclin-J18 isoform X1 [Cucurbita moschata])

HSP 1 Score: 355 bits (912), Expect = 1.04e-121
Identity = 184/186 (98.92%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 34  ITSSNASRNWLLQPITESNLQLFALVSLWISSKLHTSHPLSIKLLKSFGDKMIKEQHFMT 93
           ITSSNASRNWLLQPITESNLQLFALVSLWISSKLHTSHPLSIKLLKSFGDKMIKEQHFMT
Sbjct: 62  ITSSNASRNWLLQPITESNLQLFALVSLWISSKLHTSHPLSIKLLKSFGDKMIKEQHFMT 121

Query: 94  RDLLDAEVIFMQILKFEIGTANITFVFLEELLIQFKEVAKVGELVNWEACMDVMDLLYEK 153
           RDLLDAEVIFMQILKFEIGTANITFVFLEELLIQFKEVAKVGELVNWEACMDVMDLLYEK
Sbjct: 122 RDLLDAEVIFMQILKFEIGTANITFVFLEELLIQFKEVAKVGELVNWEACMDVMDLLYEK 181

Query: 154 EETSVSYSSPCSLAAAILVASYLITVPVQEWEFPVLPWVQFVMPFIEEDIVEQIRGILLH 213
           EETSVSYSSPCSLAAAILVASYLITVPVQEWEFPVLPWVQFVMPFIEEDIVE++RGILLH
Sbjct: 182 EETSVSYSSPCSLAAAILVASYLITVPVQEWEFPVLPWVQFVMPFIEEDIVEEVRGILLH 241

Query: 214 VLETDT 219
           VLETDT
Sbjct: 242 VLETDT 247

[Close]

BLAST of Cp4.1LG01g16560 vs. NCBI nr
Match: XP_022998518.1 (cyclin-J18 isoform X1 [Cucurbita maxima] >XP_022998527.1 cyclin-J18 isoform X1 [Cucurbita maxima])

HSP 1 Score: 347 bits (891), Expect = 1.29e-118
Identity = 180/188 (95.74%), Postives = 184/188 (97.87%), Query Frame = 0


Query: 34  ITSSNASRNWLLQPITESNLQLFALVSLWISSKLHTSHPLSIKLLKSFGDKMIKEQHFMT 93
           ITS NASRNWLLQPITESNLQLFALVSLWISSKLHTSHPLS+KLLKSFGDKMIKEQHFMT
Sbjct: 62  ITSRNASRNWLLQPITESNLQLFALVSLWISSKLHTSHPLSVKLLKSFGDKMIKEQHFMT 121

Query: 94  RDLLDAEVIFMQILKFEIGTANITFVFLEELLIQFKEVAKVGELVNWEACMDVMDLLYEK 153
           RDLLDAEVIFMQILKFEIGTANITFVFLEELLIQFKEVAKVGELVNWEACMDVMDLLYEK
Sbjct: 122 RDLLDAEVIFMQILKFEIGTANITFVFLEELLIQFKEVAKVGELVNWEACMDVMDLLYEK 181

Query: 154 EETSVSYSSPCSLAAAILVASYLITVPVQEWEFPVLPWVQFVMPFIEEDIVEQIRGILLH 213
           EETSVSYSSP SLAAAILVASYLITVPVQEWEFPV+PWVQFVMPFIEEDIVEQ+R ILL 
Sbjct: 182 EETSVSYSSPRSLAAAILVASYLITVPVQEWEFPVIPWVQFVMPFIEEDIVEQVRDILLQ 241

Query: 214 VLETDTDC 221
           VLET+TDC
Sbjct: 242 VLETETDC 249

[Close]

BLAST of Cp4.1LG01g16560 vs. ExPASy TrEMBL
Match: A0A6J1KCS9 (B-like cyclin OS=Cucurbita maxima OX=3661 GN=LOC111493129 PE=4 SV=1)

HSP 1 Score: 411 bits (1057), Expect = 1.18e-144
Identity = 212/221 (95.93%), Postives = 216/221 (97.74%), Query Frame = 0


Query: 1   MISKWLRSSNTLRCHFSLIDSTHRFLVAICIKRITSSNASRNWLLQPITESNLQLFALVS 60
           MISKWLRSSNTLRC FSLIDSTHRFLVAICIKRITS NASRNWLLQPITESNLQLFALVS
Sbjct: 1   MISKWLRSSNTLRCRFSLIDSTHRFLVAICIKRITSRNASRNWLLQPITESNLQLFALVS 60

Query: 61  LWISSKLHTSHPLSIKLLKSFGDKMIKEQHFMTRDLLDAEVIFMQILKFEIGTANITFVF 120
           LWISSKLHTSHPLS+KLLKSFGDKMIKEQHFMTRDLLDAEVIFMQILKFEIGTANITFVF
Sbjct: 61  LWISSKLHTSHPLSVKLLKSFGDKMIKEQHFMTRDLLDAEVIFMQILKFEIGTANITFVF 120

Query: 121 LEELLIQFKEVAKVGELVNWEACMDVMDLLYEKEETSVSYSSPCSLAAAILVASYLITVP 180
           LEELLIQFKEVAKVGELVNWEACMDVMDLLYEKEETSVSYSSP SLAAAILVASYLITVP
Sbjct: 121 LEELLIQFKEVAKVGELVNWEACMDVMDLLYEKEETSVSYSSPRSLAAAILVASYLITVP 180

Query: 181 VQEWEFPVLPWVQFVMPFIEEDIVEQIRGILLHVLETDTDC 221
           VQEWEFPV+PWVQFVMPFIEEDIVEQ+R ILL VLET+TDC
Sbjct: 181 VQEWEFPVIPWVQFVMPFIEEDIVEQVRDILLQVLETETDC 221

[Close]

BLAST of Cp4.1LG01g16560 vs. ExPASy TrEMBL
Match: A0A6J1H0W7 (B-like cyclin OS=Cucurbita moschata OX=3662 GN=LOC111458921 PE=4 SV=1)

HSP 1 Score: 355 bits (912), Expect = 5.05e-122
Identity = 184/186 (98.92%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 34  ITSSNASRNWLLQPITESNLQLFALVSLWISSKLHTSHPLSIKLLKSFGDKMIKEQHFMT 93
           ITSSNASRNWLLQPITESNLQLFALVSLWISSKLHTSHPLSIKLLKSFGDKMIKEQHFMT
Sbjct: 62  ITSSNASRNWLLQPITESNLQLFALVSLWISSKLHTSHPLSIKLLKSFGDKMIKEQHFMT 121

Query: 94  RDLLDAEVIFMQILKFEIGTANITFVFLEELLIQFKEVAKVGELVNWEACMDVMDLLYEK 153
           RDLLDAEVIFMQILKFEIGTANITFVFLEELLIQFKEVAKVGELVNWEACMDVMDLLYEK
Sbjct: 122 RDLLDAEVIFMQILKFEIGTANITFVFLEELLIQFKEVAKVGELVNWEACMDVMDLLYEK 181

Query: 154 EETSVSYSSPCSLAAAILVASYLITVPVQEWEFPVLPWVQFVMPFIEEDIVEQIRGILLH 213
           EETSVSYSSPCSLAAAILVASYLITVPVQEWEFPVLPWVQFVMPFIEEDIVE++RGILLH
Sbjct: 182 EETSVSYSSPCSLAAAILVASYLITVPVQEWEFPVLPWVQFVMPFIEEDIVEEVRGILLH 241

Query: 214 VLETDT 219
           VLETDT
Sbjct: 242 VLETDT 247

[Close]

BLAST of Cp4.1LG01g16560 vs. ExPASy TrEMBL
Match: A0A6J1K886 (B-like cyclin OS=Cucurbita maxima OX=3661 GN=LOC111493129 PE=4 SV=1)

HSP 1 Score: 347 bits (891), Expect = 6.23e-119
Identity = 180/188 (95.74%), Postives = 184/188 (97.87%), Query Frame = 0


Query: 34  ITSSNASRNWLLQPITESNLQLFALVSLWISSKLHTSHPLSIKLLKSFGDKMIKEQHFMT 93
           ITS NASRNWLLQPITESNLQLFALVSLWISSKLHTSHPLS+KLLKSFGDKMIKEQHFMT
Sbjct: 62  ITSRNASRNWLLQPITESNLQLFALVSLWISSKLHTSHPLSVKLLKSFGDKMIKEQHFMT 121

Query: 94  RDLLDAEVIFMQILKFEIGTANITFVFLEELLIQFKEVAKVGELVNWEACMDVMDLLYEK 153
           RDLLDAEVIFMQILKFEIGTANITFVFLEELLIQFKEVAKVGELVNWEACMDVMDLLYEK
Sbjct: 122 RDLLDAEVIFMQILKFEIGTANITFVFLEELLIQFKEVAKVGELVNWEACMDVMDLLYEK 181

Query: 154 EETSVSYSSPCSLAAAILVASYLITVPVQEWEFPVLPWVQFVMPFIEEDIVEQIRGILLH 213
           EETSVSYSSP SLAAAILVASYLITVPVQEWEFPV+PWVQFVMPFIEEDIVEQ+R ILL 
Sbjct: 182 EETSVSYSSPRSLAAAILVASYLITVPVQEWEFPVIPWVQFVMPFIEEDIVEQVRDILLQ 241

Query: 214 VLETDTDC 221
           VLET+TDC
Sbjct: 242 VLETETDC 249

[Close]

BLAST of Cp4.1LG01g16560 vs. ExPASy TrEMBL
Match: A0A6J1GZK0 (B-like cyclin OS=Cucurbita moschata OX=3662 GN=LOC111458921 PE=4 SV=1)

HSP 1 Score: 339 bits (869), Expect = 1.44e-115
Identity = 178/186 (95.70%), Postives = 180/186 (96.77%), Query Frame = 0


Query: 34  ITSSNASRNWLLQPITESNLQLFALVSLWISSKLHTSHPLSIKLLKSFGDKMIKEQHFMT 93
           ITSSNASRNWLLQPITESNLQLFALVSLWISSKLHTSHPLSIKLLKSFGDKMIKEQHFMT
Sbjct: 62  ITSSNASRNWLLQPITESNLQLFALVSLWISSKLHTSHPLSIKLLKSFGDKMIKEQHFMT 121

Query: 94  RDLLDAEVIFMQILKFEIGTANITFVFLEELLIQFKEVAKVGELVNWEACMDVMDLLYEK 153
           RDLLDA      ILKFEIGTANITFVFLEELLIQFKEVAKVGELVNWEACMDVMDLLYEK
Sbjct: 122 RDLLDA------ILKFEIGTANITFVFLEELLIQFKEVAKVGELVNWEACMDVMDLLYEK 181

Query: 154 EETSVSYSSPCSLAAAILVASYLITVPVQEWEFPVLPWVQFVMPFIEEDIVEQIRGILLH 213
           EETSVSYSSPCSLAAAILVASYLITVPVQEWEFPVLPWVQFVMPFIEEDIVE++RGILLH
Sbjct: 182 EETSVSYSSPCSLAAAILVASYLITVPVQEWEFPVLPWVQFVMPFIEEDIVEEVRGILLH 241

Query: 214 VLETDT 219
           VLETDT
Sbjct: 242 VLETDT 241

[Close]

BLAST of Cp4.1LG01g16560 vs. ExPASy TrEMBL
Match: A0A6J1DTP7 (B-like cyclin OS=Momordica charantia OX=3673 GN=LOC111023027 PE=4 SV=1)

HSP 1 Score: 318 bits (815), Expect = 1.28e-107
Identity = 161/187 (86.10%), Postives = 176/187 (94.12%), Query Frame = 0


Query: 31  IKRITSSNASRNWLLQPITESNLQLFALVSLWISSKLHTSHPLSIKLLKSFGDKMIKEQH 90
           I   TSSN S NWLLQPITESNLQLFALVSLWISSK H+SHPLSIKLLKSFGDKMIKEQH
Sbjct: 46  ISGFTSSNNSGNWLLQPITESNLQLFALVSLWISSKSHSSHPLSIKLLKSFGDKMIKEQH 105

Query: 91  FMTRDLLDAEVIFMQILKFEIGTANITFVFLEELLIQFKEVAKVGELVNWEACMDVMDLL 150
           FMTRD LDAEVIFMQ+L FEIGTA+ITF++LEELLIQFK+VAKVGELVNWEACMDVMDLL
Sbjct: 106 FMTRDFLDAEVIFMQVLNFEIGTAHITFIYLEELLIQFKKVAKVGELVNWEACMDVMDLL 165

Query: 151 YEKEETSVSYSSPCSLAAAILVASYLITVPVQEWEFPVLPWVQFVMPFIEEDIVEQIRGI 210
           YEKEETSV YSSPCSLAA+ILVASYLITVPVQEWEFP+LPWV+FVMPF EEDI+++++ I
Sbjct: 166 YEKEETSVFYSSPCSLAASILVASYLITVPVQEWEFPILPWVKFVMPFKEEDIIQEVKDI 225

Query: 211 LLHVLET 217
           L+HVLET
Sbjct: 226 LVHVLET 232

[Close]

BLAST of Cp4.1LG01g16560 vs. TAIR 10
Match: AT2G01905.1 (cyclin J18 )

HSP 1 Score: 224.9 bits (572), Expect = 6.2e-59
Identity = 113/187 (60.43%), Postives = 147/187 (78.61%), Query Frame = 0


Query: 33  RITSSNASRNWLLQPITESNLQLFALVSLWISSKLHTSHPLSIKLLKSFGDKMIKEQHFM 92
           R      + +WLLQP+ ESNLQLF L+S+WIS K+H +  LS+  LKSFGDK+I EQ FM
Sbjct: 47  RFLQKKKAEHWLLQPLNESNLQLFVLISIWISCKMHCTRGLSVHSLKSFGDKVITEQLFM 106

Query: 93  TRDLLDAEVIFMQILKFEIGTANITFVFLEELLIQFKEVAKVGELVNWEACMDVMDLLYE 152
            RD LDAE++F+++LKFEIGT NI +  LE+LLIQFKEVAKVGE +N+EACMD+MDLLYE
Sbjct: 107 VRDFLDAELVFLKVLKFEIGTLNIAYTRLEDLLIQFKEVAKVGEQLNFEACMDMMDLLYE 166

Query: 153 KEETSVSYSSPCSLAAAILVASYLITVPVQEWEFPVLPWVQFVMPFIEEDIVEQIRGILL 212
           KE+TS+ Y S  SLAA+ILV+SY+ITVP Q++EFP+LPWV+ V    E ++VE +  IL 
Sbjct: 167 KEDTSLLYQSSKSLAASILVSSYIITVPKQQYEFPILPWVKMVTNKEEREVVELVEYILA 226

Query: 213 HVLETDT 220
           HVL +++
Sbjct: 227 HVLYSNS 233

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g16560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C5X2	8.7e-58	60.43	Cyclin-J18 OS=Arabidopsis thaliana OX=3702 GN=CYCJ18 PE=2 SV=2	[more]
Q0DTM7	6.4e-53	51.11	Cyclin-J18-like OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0237900 PE=3 SV...	[more]

BLAST of Cp4.1LG01g16560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525674.1	1.18e-151	100.00	cyclin-J18 isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_022998535.1	2.44e-144	95.93	cyclin-J18 isoform X2 [Cucurbita maxima]	[more]
XP_023525659.1	1.04e-124	100.00	cyclin-J18 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022957558.1	1.04e-121	98.92	cyclin-J18 isoform X1 [Cucurbita moschata] >XP_022957559.1 cyclin-J18 isoform X1...	[more]
XP_022998518.1	1.29e-118	95.74	cyclin-J18 isoform X1 [Cucurbita maxima] >XP_022998527.1 cyclin-J18 isoform X1 [...	[more]

BLAST of Cp4.1LG01g16560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KCS9	1.18e-144	95.93	B-like cyclin OS=Cucurbita maxima OX=3661 GN=LOC111493129 PE=4 SV=1	[more]
A0A6J1H0W7	5.05e-122	98.92	B-like cyclin OS=Cucurbita moschata OX=3662 GN=LOC111458921 PE=4 SV=1	[more]
A0A6J1K886	6.23e-119	95.74	B-like cyclin OS=Cucurbita maxima OX=3661 GN=LOC111493129 PE=4 SV=1	[more]
A0A6J1GZK0	1.44e-115	95.70	B-like cyclin OS=Cucurbita moschata OX=3662 GN=LOC111458921 PE=4 SV=1	[more]
A0A6J1DTP7	1.28e-107	86.10	B-like cyclin OS=Momordica charantia OX=3673 GN=LOC111023027 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g16560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01905.1	6.2e-59	60.43	cyclin J18	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.472.10		coord: 113..175 e-value: 6.9E-9 score: 37.4
None	No IPR available	GENE3D	1.10.472.10		coord: 46..112 e-value: 6.9E-9 score: 37.4
None	No IPR available	PANTHER	PTHR10177:SF425	CYCLIN-J18	coord: 22..218
IPR006671	Cyclin, N-terminal	PFAM	PF00134	Cyclin_N	coord: 45..111 e-value: 1.1E-5 score: 25.1
IPR039361	Cyclin	PANTHER	PTHR10177	CYCLINS	coord: 22..218
IPR036915	Cyclin-like superfamily	SUPERFAMILY	47954	Cyclin-like	coord: 44..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g16560.1	Cp4.1LG01g16560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007049	cell cycle
biological_process	GO:0051301	cell division
cellular_component	GO:0016021	integral component of membrane