Cp4.1LG01g16510 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g16510
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description50S ribosomal protein L21
LocationCp4.1LG01: 10254994 .. 10259009 (-)
RNA-Seq ExpressionCp4.1LG01g16510
SyntenyCp4.1LG01g16510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TACAACTAGAAAAGAGGATAGGATAAGCCTGAAGTTCAAAACAGCCGAGCCATGGCGAAAACAAGAACGAACCATAGTTACTAGACGAAGAGGACCTTGAAGAGGTCTCTGTAATGGCGTCTCTAACTCTTTCCCTCTGCGCCAATTTCGCCACTCACTGCCGAATCTCCACCAAGCAGAATACACCATTATCAACACCAATTTCATCTTCATTCAAACTCTCTCCTTCTTCCCGCCCTGCATTGTCCTTCGTCCTCAAGTCCTCGGAGTCCGAAGCGGCTGTAATCGACTCTGAGCCTGCCGCTTCCCAAATCGTTGAAGTCCCCTCGGAACAGGCCCCCAAGCGCGAGGAAATCTTCGCGGTTGTTATGGTTAGTGTTTAATTTCGCTTTTCACTAACTTCTTGCGTTTTTTGATTTCGGCTCCTCCTTTTCTGTTCAAGCTACTACAATCGATTTTTGTACTCACGTTTATAATATGGTCTGTGTGTGTGGATTTTTTCAATAGATTGGATCCCGCCAATATATAGTATTTCCAGGGCGTTATATCCATACTCAGAGGCTGAAAGGGGCTAACGTCAATGATAAGGTGGGTATCCTTAATATTCTACTCGTTAAATGGTTATTATTTGTGTATCTGAGTTGAGTGTTATATTATATTACATTTATGGAGATTAGAGTGTTCTTGCATCGTTTGGATTCTGATGAACAGTGACCTTCATTGTTGTTTAATCTATGTATTATATATTGATATTCCTTCATGTGAAGTTCTCTCGGAGTGACTTTGAAGGAAATTTCGTGGAAATGTATTTGGGTAATCGTTACCTAAGCTTTCTTCTGTTAGTGAAAATTGGTTTCAGAATGTGTCAAATATAATATGGTGTTCATATTTAGCGTGCTTAAATTAGTTAGTTTGAACAAAGACTTGTTATGAAACATTTGACTTATTCCTGTGGGGTTTGAGATATGGATGCCTTGACTAACTGCATAGAAGAATTTTAACAACCCAAGCACACTTGTTCTCTTTGGACTTTCCATTTGGAGGTTCCCCTCAAGGTTTTTAAAATGCATCGGGGAGAGAAAGATTTCCACACGCTTATAGACAGATTTCCACACCCTTATAGACAGACAGTGTTTCGTTCTCCTACTCATCCGATATGGAATCTTACAAGAACCATTTTTACTTTTAATTGTTAATTAATTGACTATAGTTTTTGAGCTTGGGATTTGAAGGAATGCTTCATATTATTTTGTGAATGGTGTTAATGCTTGGCACCATGGCATGCTATGTTGGACATCAAGGGGAAAAAGTTTGAGATGGTAAGAGAATTGATTAGACCAAGAGAATGTTGTTGGGTTTGGTAGAAATGTCTGGATAATTTAGAAAAGTTATTCCTGAGTAGTGGTGATAGAGCTTGATCTTGGGTCAGTGTAATGCCCAAGCCTTAGATATTGTTCTCTTTGGGCTTTTCCTTTCGAGCTTTTCAAAACGCATCTGCTAGAGACAGGTTTTCACACCCTTATAAAGAATGATTTGTTCTCCTCTATGGGATCTCACAGGCAGTGTCCTGGGTCATTGACAACTTGGGTAGGAACTTCGTCATAGCCTAATTTTTTTCCCTTTAGAGTGAAATATACTCCTAGCTGTGATTCTGTTACAGACTTCATCAAATAATCGGGGATATTTTTTCAGATTTCTTTGGATGACCTCTTTATGAAAAATTCACCATGAATCTCAAGATTTGGCTGTTATTCTTCTCGCTTGTTACAAAGAGTTTGTCTTTTCCCTAACTCTAGCTATATTTGCTCGTTCATTCATGGACTCTCAAGTTATCTGACCTTTCCTTGTAAGTTTAGTTTTCTCATTAGTTGATCTTTTTCAATCCTCTAGTCCTCATTTCTTCGATGTGGCTAAAATCTCAGAGAAGCTTTGGTTTTTGTCATCATCGATCGTTTTCGGAAGGATAAATAACATGGACCCGGTCCAAAGATGTTAGTGTATGGTTTCGAGACCTACACTCGTTATACAATAAGGTAGCTTAAGACTTGCTTCGTGTACTATAAAGGTGTCACTTTACTGTAAAAGTTTGGAATGGATTTATTGAAATCGTTAGAAGCACTCTAGTAGGTAGAAATAAGCATACTGGGTAGTTACTAAAAGAATTGCAAAGAGACTTCCAATGTAAAATTGAAGAAACCACCCTATCCGAAAAACTAAAAAATCCTCTTTTTGCATAGAATGCACGAATTGAGAAATAAGTAATTTCTTTAATGTGACCTTTTTATGATCAAGGGAAGAACTTGAGTTCCTTCTTATTTAACTTTGTGAGAGATTCTCTATTCTTTTTCATCACGGAATTTACCGCCGATCATCTTCTAGAGAAAAGTATGAAGTCTAGCTTCCAACTTCCATCTTCACTTTCTGAATGAACACCTTCTATGCAGTCTTTCTGGTGATTTCTCCTGAATTTCATTGTTAAGAGCTTTTCAATACAATGGATCGAAGGAAGAAACTGACTTTAGAAATGTGATGACATTGTAACAGCCCAAGCCCAAGCCCAAGCCCACCGCTAGTAGATATTGTCCATTTTGGTCTCTTACGTATCACCGTTAGCCTCACGGTTTTTAAAACGCGTCTTCTAGGGAGAGGTTTCCACATCTTTATAAGGAATGCTTCGTTCTCCTCTCCAATCCACCTCCTTTAGGGGCCCAGCGTTCTCGCTAGCACACCAACCGGTGTCTGGCTCTGATACCATTTGTAACAGCTAAAGCCCACCGCTAGCAAATATTGTCCACTTTGATCCTTTACGTATTACCGTCAGCCTCATGGTTTTTAAAACAAATCTTCTAGGGATAGATTTCTACACCCTTATAAAGAATGCTTCGTTCCCCTCTCCAACCGGCGTGGGATCTCACAGTGATTCCTCTCCAACCAATGTGGGATCTCACCGTGATAATCATTGATCAAAATTCATGTGGTGCACATATATTTACGTGTGTGAATATTGATTTAGTTTATAGTTTTTAGATTCCTCATCGAGTAGCTCGGTGAATCTCATCATATTCTACAAACTAACAAACATTGGGTTTATTACGTAATAACAAACCGGTCATGTCTCATCTATACATGTGCACTTAATTATGTGATACTGTAACAATCTTAAAGTTCTCTAAATTTCTTATTGTTCAGATAACTCTGAACAAAGTTTTGCTTGTGGGAACAAAGACTCAGGCATACATTGGAAAACCAATAGTGACAAATGCTGCTGTTCATGCCGTCGTCGAGGAGCAGGTAATGCATTAACTTGGTGATCATCCCCTCTTCATCAGAATGAAATAGAACAATGCTTCTTTTTCTTAGATTGTCTTGTTTTTATTTCTTATATTCAGGGATTAGATAAGAAGGTTATTGTGTTCAAGTACAAGAAAAAGAAAAACTATCGACGAAACATCGGACACCGTCAGGTATTTCTCGGTCTTTGCCACTCTCTTTCTCTCTTCAGTCTTGCAGCATGTTCTTGGGGTTTGCCTTTACATTTCATTCAACTGCTTCCATAGCTTTTGTAAACTTCTGGAACTGATTCACAGACCATAGGAATGTTTGATGTGCATGAGTTTAGAAATTTCTTTTGAGTACACATTTCTCTTTATAATCTCCGATTCTGTTTTACCCGAACGATACAGCCAAATACGCGGATTAGGATAACGGAAATCAGTGGATATCAAGACTATCCAGCAGCCACACTTGAGTCGTAGAAACAAATTCTGATGAACTATGAACTCATTCAGCAGGTTTGAAGATCTTAATCCTTATTTCTTGCTCAAAATCCCCACTTTTCTGTATGTAAGTTCTTGTGAATCCAAATGTTTCAACTCAATTGTTTCCATTTGTTAACGAATCTCATATAATCGTTAGTGACCATTCTGTCCATTTTTCAAGGAATTTTTGCAATTTTGAAGGAATTTTATTGCTCATATGGAGTCTTAGAAACTTTCTAACTTAAAGCTTAATATGAG

mRNA sequence

TACAACTAGAAAAGAGGATAGGATAAGCCTGAAGTTCAAAACAGCCGAGCCATGGCGAAAACAAGAACGAACCATAGTTACTAGACGAAGAGGACCTTGAAGAGGTCTCTGTAATGGCGTCTCTAACTCTTTCCCTCTGCGCCAATTTCGCCACTCACTGCCGAATCTCCACCAAGCAGAATACACCATTATCAACACCAATTTCATCTTCATTCAAACTCTCTCCTTCTTCCCGCCCTGCATTGTCCTTCGTCCTCAAGTCCTCGGAGTCCGAAGCGGCTGTAATCGACTCTGAGCCTGCCGCTTCCCAAATCGTTGAAGTCCCCTCGGAACAGGCCCCCAAGCGCGAGGAAATCTTCGCGGTTGTTATGATTGGATCCCGCCAATATATAGTATTTCCAGGGCGTTATATCCATACTCAGAGGCTGAAAGGGGCTAACGTCAATGATAAGATAACTCTGAACAAAGTTTTGCTTGTGGGAACAAAGACTCAGGCATACATTGGAAAACCAATAGTGACAAATGCTGCTGTTCATGCCGTCGTCGAGGAGCAGGGATTAGATAAGAAGGTTATTGTGTTCAAGTACAAGAAAAAGAAAAACTATCGACGAAACATCGGACACCGTCAGCCAAATACGCGGATTAGGATAACGGAAATCAGTGGATATCAAGACTATCCAGCAGCCACACTTGAGTCGTAGAAACAAATTCTGATGAACTATGAACTCATTCAGCAGGTTTGAAGATCTTAATCCTTATTTCTTGCTCAAAATCCCCACTTTTCTGTATGTAAGTTCTTGTGAATCCAAATGTTTCAACTCAATTGTTTCCATTTGTTAACGAATCTCATATAATCGTTAGTGACCATTCTGTCCATTTTTCAAGGAATTTTTGCAATTTTGAAGGAATTTTATTGCTCATATGGAGTCTTAGAAACTTTCTAACTTAAAGCTTAATATGAG

Coding sequence (CDS)

ATGGCGTCTCTAACTCTTTCCCTCTGCGCCAATTTCGCCACTCACTGCCGAATCTCCACCAAGCAGAATACACCATTATCAACACCAATTTCATCTTCATTCAAACTCTCTCCTTCTTCCCGCCCTGCATTGTCCTTCGTCCTCAAGTCCTCGGAGTCCGAAGCGGCTGTAATCGACTCTGAGCCTGCCGCTTCCCAAATCGTTGAAGTCCCCTCGGAACAGGCCCCCAAGCGCGAGGAAATCTTCGCGGTTGTTATGATTGGATCCCGCCAATATATAGTATTTCCAGGGCGTTATATCCATACTCAGAGGCTGAAAGGGGCTAACGTCAATGATAAGATAACTCTGAACAAAGTTTTGCTTGTGGGAACAAAGACTCAGGCATACATTGGAAAACCAATAGTGACAAATGCTGCTGTTCATGCCGTCGTCGAGGAGCAGGGATTAGATAAGAAGGTTATTGTGTTCAAGTACAAGAAAAAGAAAAACTATCGACGAAACATCGGACACCGTCAGCCAAATACGCGGATTAGGATAACGGAAATCAGTGGATATCAAGACTATCCAGCAGCCACACTTGAGTCGTAG

Protein sequence

MASLTLSLCANFATHCRISTKQNTPLSTPISSSFKLSPSSRPALSFVLKSSESEAAVIDSEPAASQIVEVPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTQAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYKKKKNYRRNIGHRQPNTRIRITEISGYQDYPAATLES
Homology
[Close]
BLAST of Cp4.1LG01g16510 vs. ExPASy Swiss-Prot
Match: P51412 (50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL21 PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 3.3e-53
Identity = 120/210 (57.14%), Postives = 152/210 (72.38%), Query Frame = 0 

Query: 2   ASLTLSLCANFATHCRISTKQNT----PLSTPISSSFK-----LSPS----SRPALSFVL 61
           +S TLSLC+ F+ HC +++++++     LS P  +  K     LSPS    SR A +   
Sbjct: 4   SSATLSLCSTFSAHCNVNSRRSSTILCSLSKPSLNLAKPLTGFLSPSTASTSRTAFTVAP 63

Query: 62  KSSESEAAVIDSEPAASQI-------VEVPSEQAPKREEIFAVVMIGSRQYIVFPGRYIH 121
           K +ES   V+++EP  + I       V   +E+  KREEIFAV+M+G RQYIVFPGRY++
Sbjct: 64  KFAES---VVEAEPETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLY 123

Query: 122 TQRLKGANVNDKITLNKVLLVGTKTQAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYKKK 181
           TQRLK ANV+D+I LNKVLLVGTKT  YIGKP+VTNA VHAVVE QGL+ KV+VFKYK K
Sbjct: 124 TQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPK 183

Query: 182 KNYRRNIGHRQPNTRIRITEISGYQDYPAA 192
           K YRRNIGHRQPNTRIRIT I+GY++YPA+
Sbjct: 184 KKYRRNIGHRQPNTRIRITGITGYEEYPAS 210

[Close]
BLAST of Cp4.1LG01g16510 vs. ExPASy Swiss-Prot
Match: P24613 (50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL21 PE=1 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.2e-49
Identity = 110/168 (65.48%), Postives = 126/168 (75.00%), Query Frame = 0 

Query: 34  FKLSPSSRPALSFVLKSSESEAAVIDSEPAASQIVEVPSEQAPK------REEIFAVVMI 93
           F+  P+ +P LS VL            EP   +  ++ ++  PK      REEIFAVV+I
Sbjct: 75  FQRPPNQKPQLSDVLPDDFQA-----PEPGTPEYNDIINQFLPKKGPPPPREEIFAVVVI 134

Query: 94  GSRQYIVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTQAYIGKPIVTNAAVHAVVEEQ 153
           GSRQYIV PGR+I+TQRLKGA VNDKI LNKVLLVGTK   YIG PIVTNAAVHAVVEEQ
Sbjct: 135 GSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAVHAVVEEQ 194

Query: 154 GLDKKVIVFKYKKKKNYRRNIGHRQPNTRIRITEISGYQDYPAATLES 196
            LD KVIVFKYKKKKNYRRNIGHRQP TRI+IT I+GY+DYPA+TLE+
Sbjct: 195 LLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYEDYPASTLEA 237

[Close]
BLAST of Cp4.1LG01g16510 vs. ExPASy Swiss-Prot
Match: Q8L9A0 (50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL21M PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.5e-26
Identity = 62/117 (52.99%), Postives = 86/117 (73.50%), Query Frame = 0 

Query: 71  PSEQAPK-REEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTQAY 130
           PSE+  K  E +FA+V IGS Q+ V  G  I T++LK  ++NDK+ L KVLL+G+ +Q  
Sbjct: 129 PSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKVLLLGSASQTI 188

Query: 131 IGKPIVTNAAVHAVVEEQGLDKKVIVFKYKKKKNYRRNIGHRQPNTRIRITEISGYQ 187
           IG+PI+ +A VHAVVEE  LD+KV++FK K++KNYRR  GHRQ  T++RIT+I G +
Sbjct: 189 IGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRITDIQGIE 245

[Close]
BLAST of Cp4.1LG01g16510 vs. ExPASy Swiss-Prot
Match: B8E0B4 (50S ribosomal protein L21 OS=Dictyoglomus turgidum (strain DSM 6724 / Z-1310) OX=515635 GN=rplU PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-17
Identity = 51/102 (50.00%), Postives = 68/102 (66.67%), Query Frame = 0 

Query: 81  IFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTQAYIGKPIVTNAAV 140
           +F VV  G +QY V  G  ++ ++LK ANV D++ L+KVLLVG + +  IG+P V  A V
Sbjct: 1   MFVVVETGGKQYKVSVGSMVNVEKLK-ANVGDEVVLDKVLLVGKEDEVIIGQPYVEGAKV 60

Query: 141 HAVVEEQGLDKKVIVFKYKKKKNYRRNIGHRQPNTRIRITEI 183
            A V  Q    KVIVFK+K+KK+YRR  GHRQP T++ I EI
Sbjct: 61  IAKVVRQDKYPKVIVFKFKRKKHYRRKYGHRQPYTQLSIKEI 101

[Close]
BLAST of Cp4.1LG01g16510 vs. ExPASy Swiss-Prot
Match: A0LPF7 (50S ribosomal protein L21 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) OX=335543 GN=rplU PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.3e-17
Identity = 43/102 (42.16%), Postives = 69/102 (67.65%), Query Frame = 0 

Query: 81  IFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTQAYIGKPIVTNAAV 140
           ++AV+  G RQY V PG+ +  ++L G  V DK+TL++VLL    T   +G+P++ N AV
Sbjct: 1   MYAVLKSGGRQYEVRPGQVVKVEKLLG-EVGDKVTLDQVLLFSDGTDIQVGQPVLANIAV 60

Query: 141 HAVVEEQGLDKKVIVFKYKKKKNYRRNIGHRQPNTRIRITEI 183
              + EQG  +K+++FK+K++K+YR+  GHRQ  T +R+ EI
Sbjct: 61  QGQIVEQGRHRKIVIFKHKRRKDYRKKQGHRQHYTAVRVEEI 101

[Close]
BLAST of Cp4.1LG01g16510 vs. NCBI nr
Match: XP_023537173.1 (50S ribosomal protein L21, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 367 bits (941), Expect = 1.63e-127
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0 

Query: 1   MASLTLSLCANFATHCRISTKQNTPLSTPISSSFKLSPSSRPALSFVLKSSESEAAVIDS 60
           MASLTLSLCANFATHCRISTKQNTPLSTPISSSFKLSPSSRPALSFVLKSSESEAAVIDS
Sbjct: 1   MASLTLSLCANFATHCRISTKQNTPLSTPISSSFKLSPSSRPALSFVLKSSESEAAVIDS 60

Query: 61  EPAASQIVEVPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVL 120
           EPAASQIVEVPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVL
Sbjct: 61  EPAASQIVEVPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVL 120

Query: 121 LVGTKTQAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYKKKKNYRRNIGHRQPNTRIRIT 180
           LVGTKTQAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYKKKKNYRRNIGHRQPNTRIRIT
Sbjct: 121 LVGTKTQAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYKKKKNYRRNIGHRQPNTRIRIT 180

Query: 181 EISGYQDYPAATLES 195
           EISGYQDYPAATLES
Sbjct: 181 EISGYQDYPAATLES 195

[Close]
BLAST of Cp4.1LG01g16510 vs. NCBI nr
Match: KAG6592212.1 (50S ribosomal protein L21, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 365 bits (936), Expect = 9.41e-127
Identity = 193/195 (98.97%), Postives = 195/195 (100.00%), Query Frame = 0 

Query: 1   MASLTLSLCANFATHCRISTKQNTPLSTPISSSFKLSPSSRPALSFVLKSSESEAAVIDS 60
           MASLTLSLCANFATHCR+STK+NTPLSTPISSSFKLSPSSRPALSFVLKSSESEAAVIDS
Sbjct: 1   MASLTLSLCANFATHCRVSTKKNTPLSTPISSSFKLSPSSRPALSFVLKSSESEAAVIDS 60

Query: 61  EPAASQIVEVPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVL 120
           EPAASQIVEVPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVL
Sbjct: 61  EPAASQIVEVPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVL 120

Query: 121 LVGTKTQAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYKKKKNYRRNIGHRQPNTRIRIT 180
           LVGTKTQAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYKKKKNYRRNIGHRQPNTRIRIT
Sbjct: 121 LVGTKTQAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYKKKKNYRRNIGHRQPNTRIRIT 180

Query: 181 EISGYQDYPAATLES 195
           EISGYQDYPAATLES
Sbjct: 181 EISGYQDYPAATLES 195

[Close]
BLAST of Cp4.1LG01g16510 vs. NCBI nr
Match: XP_022935861.1 (50S ribosomal protein L21, chloroplastic-like [Cucurbita moschata] >KAG7025074.1 50S ribosomal protein L21, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 364 bits (935), Expect = 1.34e-126
Identity = 193/195 (98.97%), Postives = 195/195 (100.00%), Query Frame = 0 

Query: 1   MASLTLSLCANFATHCRISTKQNTPLSTPISSSFKLSPSSRPALSFVLKSSESEAAVIDS 60
           MASLTLSLCANFATHCR+STKQNTPLSTPISSSFKLSPSSRPALSFVLKSSESEAAVIDS
Sbjct: 1   MASLTLSLCANFATHCRVSTKQNTPLSTPISSSFKLSPSSRPALSFVLKSSESEAAVIDS 60

Query: 61  EPAASQIVEVPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVL 120
           EPAASQIVEVPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVL
Sbjct: 61  EPAASQIVEVPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVL 120

Query: 121 LVGTKTQAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYKKKKNYRRNIGHRQPNTRIRIT 180
           LVGTKTQAYIGKPIVTNAAVHAVVEEQGL+KKVIVFKYKKKKNYRRNIGHRQPNTRIRIT
Sbjct: 121 LVGTKTQAYIGKPIVTNAAVHAVVEEQGLNKKVIVFKYKKKKNYRRNIGHRQPNTRIRIT 180

Query: 181 EISGYQDYPAATLES 195
           EISGYQDYPAATLES
Sbjct: 181 EISGYQDYPAATLES 195

[Close]
BLAST of Cp4.1LG01g16510 vs. NCBI nr
Match: XP_022976941.1 (50S ribosomal protein L21, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 357 bits (916), Expect = 1.05e-123
Identity = 190/195 (97.44%), Postives = 191/195 (97.95%), Query Frame = 0 

Query: 1   MASLTLSLCANFATHCRISTKQNTPLSTPISSSFKLSPSSRPALSFVLKSSESEAAVIDS 60
           MASL LSLC NFATHCR+STKQNTPLSTPISSSFKLSPSSRPALSFVLKSSESEAAVI S
Sbjct: 1   MASLMLSLCTNFATHCRVSTKQNTPLSTPISSSFKLSPSSRPALSFVLKSSESEAAVIIS 60

Query: 61  EPAASQIVEVPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVL 120
           EPA SQIVEVPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVL
Sbjct: 61  EPAPSQIVEVPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVL 120

Query: 121 LVGTKTQAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYKKKKNYRRNIGHRQPNTRIRIT 180
           LVGTKTQAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYKKKKNYRRNIGHRQPNTRIRIT
Sbjct: 121 LVGTKTQAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYKKKKNYRRNIGHRQPNTRIRIT 180

Query: 181 EISGYQDYPAATLES 195
           EISGYQDYPAATLES
Sbjct: 181 EISGYQDYPAATLES 195

[Close]
BLAST of Cp4.1LG01g16510 vs. NCBI nr
Match: XP_038899803.1 (50S ribosomal protein L21, chloroplastic [Benincasa hispida])

HSP 1 Score: 328 bits (840), Expect = 7.32e-112
Identity = 180/212 (84.91%), Postives = 185/212 (87.26%), Query Frame = 0 

Query: 1   MASLTLSLCANFATHCRISTKQNTPLSTPI--------------SSSFKLS---PSSRPA 60
           MASLTLSLCANF+THCRISTK N P STPI              SSSF  S   PSSRPA
Sbjct: 1   MASLTLSLCANFSTHCRISTKHNLPSSTPIFPSNSHHHSFNFELSSSFSSSFSIPSSRPA 60

Query: 61  LSFVLKSSESEAAVIDSEPAASQIVEVPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQ 120
            SF+LKSSESEAAVIDSEPAASQ +E+PSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQ
Sbjct: 61  FSFLLKSSESEAAVIDSEPAASQTLEIPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQ 120

Query: 121 RLKGANVNDKITLNKVLLVGTKTQAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYKKKKN 180
           RLKGANVNDKITLNKVLLVGTKTQ YIGKP+VTNAAVHAVVEEQGLD KVIVFKYKKKKN
Sbjct: 121 RLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIVFKYKKKKN 180

Query: 181 YRRNIGHRQPNTRIRITEISGYQDYPAATLES 195
           YRRNIGHRQPNTRIRITEISGYQDYPA TLES
Sbjct: 181 YRRNIGHRQPNTRIRITEISGYQDYPATTLES 212

[Close]
BLAST of Cp4.1LG01g16510 vs. ExPASy TrEMBL
Match: A0A6J1F5X0 (50S ribosomal protein L21, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442642 PE=3 SV=1)

HSP 1 Score: 364 bits (935), Expect = 6.47e-127
Identity = 193/195 (98.97%), Postives = 195/195 (100.00%), Query Frame = 0 

Query: 1   MASLTLSLCANFATHCRISTKQNTPLSTPISSSFKLSPSSRPALSFVLKSSESEAAVIDS 60
           MASLTLSLCANFATHCR+STKQNTPLSTPISSSFKLSPSSRPALSFVLKSSESEAAVIDS
Sbjct: 1   MASLTLSLCANFATHCRVSTKQNTPLSTPISSSFKLSPSSRPALSFVLKSSESEAAVIDS 60

Query: 61  EPAASQIVEVPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVL 120
           EPAASQIVEVPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVL
Sbjct: 61  EPAASQIVEVPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVL 120

Query: 121 LVGTKTQAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYKKKKNYRRNIGHRQPNTRIRIT 180
           LVGTKTQAYIGKPIVTNAAVHAVVEEQGL+KKVIVFKYKKKKNYRRNIGHRQPNTRIRIT
Sbjct: 121 LVGTKTQAYIGKPIVTNAAVHAVVEEQGLNKKVIVFKYKKKKNYRRNIGHRQPNTRIRIT 180

Query: 181 EISGYQDYPAATLES 195
           EISGYQDYPAATLES
Sbjct: 181 EISGYQDYPAATLES 195

[Close]
BLAST of Cp4.1LG01g16510 vs. ExPASy TrEMBL
Match: A0A6J1IIA4 (50S ribosomal protein L21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477160 PE=3 SV=1)

HSP 1 Score: 357 bits (916), Expect = 5.10e-124
Identity = 190/195 (97.44%), Postives = 191/195 (97.95%), Query Frame = 0 

Query: 1   MASLTLSLCANFATHCRISTKQNTPLSTPISSSFKLSPSSRPALSFVLKSSESEAAVIDS 60
           MASL LSLC NFATHCR+STKQNTPLSTPISSSFKLSPSSRPALSFVLKSSESEAAVI S
Sbjct: 1   MASLMLSLCTNFATHCRVSTKQNTPLSTPISSSFKLSPSSRPALSFVLKSSESEAAVIIS 60

Query: 61  EPAASQIVEVPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVL 120
           EPA SQIVEVPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVL
Sbjct: 61  EPAPSQIVEVPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVL 120

Query: 121 LVGTKTQAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYKKKKNYRRNIGHRQPNTRIRIT 180
           LVGTKTQAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYKKKKNYRRNIGHRQPNTRIRIT
Sbjct: 121 LVGTKTQAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYKKKKNYRRNIGHRQPNTRIRIT 180

Query: 181 EISGYQDYPAATLES 195
           EISGYQDYPAATLES
Sbjct: 181 EISGYQDYPAATLES 195

[Close]
BLAST of Cp4.1LG01g16510 vs. ExPASy TrEMBL
Match: A0A6J1CPA7 (50S ribosomal protein L21, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111013483 PE=3 SV=1)

HSP 1 Score: 320 bits (819), Expect = 5.05e-109
Identity = 176/209 (84.21%), Postives = 182/209 (87.08%), Query Frame = 0 

Query: 1   MASLTLSLCANFATHCRISTKQNTPLSTPI------SSSFKLS--------PSSRPALSF 60
           MASLTLSLCA FATHCRIS+KQN P STPI        SF L+        PSSR  L F
Sbjct: 1   MASLTLSLCATFATHCRISSKQNLPSSTPIFPSNSHHDSFNLALSCSSSSHPSSRAPLPF 60

Query: 61  VLKSSESEAAVIDSEPAASQIVEVPSEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLK 120
           VL+SSESEAAVI+SEPAASQIVEVP EQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLK
Sbjct: 61  VLRSSESEAAVIESEPAASQIVEVPPEQAPKREEIFAVVMIGSRQYIVFPGRYIHTQRLK 120

Query: 121 GANVNDKITLNKVLLVGTKTQAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYKKKKNYRR 180
           GANVNDKITLNKVLLVGTKT  YIGKP+VTNAAVHA+VEEQGLD KVIVFKYKKKKNYRR
Sbjct: 121 GANVNDKITLNKVLLVGTKTHTYIGKPVVTNAAVHAIVEEQGLDDKVIVFKYKKKKNYRR 180

Query: 181 NIGHRQPNTRIRITEISGYQDYPAATLES 195
           NIGHRQPNTRIRITEISGYQDYPAATLES
Sbjct: 181 NIGHRQPNTRIRITEISGYQDYPAATLES 209

[Close]
BLAST of Cp4.1LG01g16510 vs. ExPASy TrEMBL
Match: A0A6J1EHE5 (50S ribosomal protein L21, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111433392 PE=3 SV=1)

HSP 1 Score: 317 bits (811), Expect = 1.06e-107
Identity = 177/216 (81.94%), Postives = 186/216 (86.11%), Query Frame = 0 

Query: 1   MASLTLSLCANFATHCRISTKQNTPLSTP-----------------ISSSFKLSPSS--- 60
           MASLTLSLC++FA+HCR+STKQN P STP                  SSS KLS SS   
Sbjct: 1   MASLTLSLCSHFASHCRLSTKQNFPSSTPNFPSNSPYDSFNFALSTSSSSHKLSSSSVTS 60

Query: 61  -RPALSFVLKSSESEAAVIDSEPAASQIVEVPSEQAPKREEIFAVVMIGSRQYIVFPGRY 120
              AL F+LKSSESEAAVI+SEPAASQ VEVPSE+APKREEIFAVVMIGSRQYIVFPGRY
Sbjct: 61  SHSALPFLLKSSESEAAVIESEPAASQTVEVPSEEAPKREEIFAVVMIGSRQYIVFPGRY 120

Query: 121 IHTQRLKGANVNDKITLNKVLLVGTKTQAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYK 180
           IHTQRLKGANVNDKITLNKVLLVGTKT+AYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYK
Sbjct: 121 IHTQRLKGANVNDKITLNKVLLVGTKTEAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYK 180

Query: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPAATLES 195
           KKKNYRRNIGHRQPNTRIRITEISGYQDYPA+TLES
Sbjct: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPASTLES 216

[Close]
BLAST of Cp4.1LG01g16510 vs. ExPASy TrEMBL
Match: A0A6J1IX10 (50S ribosomal protein L21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480675 PE=3 SV=1)

HSP 1 Score: 313 bits (802), Expect = 2.50e-106
Identity = 176/216 (81.48%), Postives = 185/216 (85.65%), Query Frame = 0 

Query: 1   MASLTLSLCANFATHCRISTKQNTPLSTP-----------------ISSSFKLSPSS--- 60
           MASLTLSLC++FA+HCR+STKQN P STP                  SSS KLS SS   
Sbjct: 1   MASLTLSLCSHFASHCRVSTKQNFPSSTPNFPSNSHYDSFNFALSTSSSSHKLSSSSVTS 60

Query: 61  -RPALSFVLKSSESEAAVIDSEPAASQIVEVPSEQAPKREEIFAVVMIGSRQYIVFPGRY 120
              AL F+LKSSESEAAVI+SE AASQ VEVPSE+APKREEIFAVVMIGSRQYIVFPGRY
Sbjct: 61  SHSALPFLLKSSESEAAVIESELAASQTVEVPSEEAPKREEIFAVVMIGSRQYIVFPGRY 120

Query: 121 IHTQRLKGANVNDKITLNKVLLVGTKTQAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYK 180
           IHTQRLKGANVNDKITLNKVLLVGTKT+AYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYK
Sbjct: 121 IHTQRLKGANVNDKITLNKVLLVGTKTEAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYK 180

Query: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPAATLES 195
           KKKNYRRNIGHRQPNTRIRITEISGYQDYPA+TLES
Sbjct: 181 KKKNYRRNIGHRQPNTRIRITEISGYQDYPASTLES 216

[Close]
BLAST of Cp4.1LG01g16510 vs. TAIR 10
Match: AT1G35680.1 (Ribosomal protein L21 )

HSP 1 Score: 209.5 bits (532), Expect = 2.4e-54
Identity = 120/210 (57.14%), Postives = 152/210 (72.38%), Query Frame = 0 

Query: 2   ASLTLSLCANFATHCRISTKQNT----PLSTPISSSFK-----LSPS----SRPALSFVL 61
           +S TLSLC+ F+ HC +++++++     LS P  +  K     LSPS    SR A +   
Sbjct: 4   SSATLSLCSTFSAHCNVNSRRSSTILCSLSKPSLNLAKPLTGFLSPSTASTSRTAFTVAP 63

Query: 62  KSSESEAAVIDSEPAASQI-------VEVPSEQAPKREEIFAVVMIGSRQYIVFPGRYIH 121
           K +ES   V+++EP  + I       V   +E+  KREEIFAV+M+G RQYIVFPGRY++
Sbjct: 64  KFAES---VVEAEPETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLY 123

Query: 122 TQRLKGANVNDKITLNKVLLVGTKTQAYIGKPIVTNAAVHAVVEEQGLDKKVIVFKYKKK 181
           TQRLK ANV+D+I LNKVLLVGTKT  YIGKP+VTNA VHAVVE QGL+ KV+VFKYK K
Sbjct: 124 TQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPK 183

Query: 182 KNYRRNIGHRQPNTRIRITEISGYQDYPAA 192
           K YRRNIGHRQPNTRIRIT I+GY++YPA+
Sbjct: 184 KKYRRNIGHRQPNTRIRITGITGYEEYPAS 210

[Close]
BLAST of Cp4.1LG01g16510 vs. TAIR 10
Match: AT4G30930.1 (Ribosomal protein L21 )

HSP 1 Score: 119.8 bits (299), Expect = 2.5e-27
Identity = 62/117 (52.99%), Postives = 86/117 (73.50%), Query Frame = 0 

Query: 71  PSEQAPK-REEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTQAY 130
           PSE+  K  E +FA+V IGS Q+ V  G  I T++LK  ++NDK+ L KVLL+G+ +Q  
Sbjct: 129 PSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKVLLLGSASQTI 188

Query: 131 IGKPIVTNAAVHAVVEEQGLDKKVIVFKYKKKKNYRRNIGHRQPNTRIRITEISGYQ 187
           IG+PI+ +A VHAVVEE  LD+KV++FK K++KNYRR  GHRQ  T++RIT+I G +
Sbjct: 189 IGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRITDIQGIE 245

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g16510 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P514123.3e-5357.1450S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2... [more]
P246132.2e-4965.4850S ribosomal protein L21, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL21 P... [more]
Q8L9A03.5e-2652.9950S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL2... [more]
B8E0B41.0e-1750.0050S ribosomal protein L21 OS=Dictyoglomus turgidum (strain DSM 6724 / Z-1310) OX... [more]
A0LPF72.3e-1742.1650S ribosomal protein L21 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MP... [more]
BLAST of Cp4.1LG01g16510 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023537173.11.63e-127100.0050S ribosomal protein L21, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
KAG6592212.19.41e-12798.9750S ribosomal protein L21, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
XP_022935861.11.34e-12698.9750S ribosomal protein L21, chloroplastic-like [Cucurbita moschata] >KAG7025074.1... [more]
XP_022976941.11.05e-12397.4450S ribosomal protein L21, chloroplastic-like [Cucurbita maxima][more]
XP_038899803.17.32e-11284.9150S ribosomal protein L21, chloroplastic [Benincasa hispida][more]
BLAST of Cp4.1LG01g16510 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1F5X06.47e-12798.9750S ribosomal protein L21, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1IIA45.10e-12497.4450S ribosomal protein L21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1CPA75.05e-10984.2150S ribosomal protein L21, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1EHE51.06e-10781.9450S ribosomal protein L21, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1IX102.50e-10681.4850S ribosomal protein L21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
BLAST of Cp4.1LG01g16510 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G35680.12.4e-5457.14Ribosomal protein L21 [more]
AT4G30930.12.5e-2752.99Ribosomal protein L21 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028909Ribosomal protein L21-likePFAMPF00829Ribosomal_L21pcoord: 82..182
e-value: 7.5E-31
score: 106.4
IPR028909Ribosomal protein L21-likePANTHERPTHR2134950S RIBOSOMAL PROTEIN L21coord: 1..194
IPR001787Ribosomal protein L21TIGRFAMTIGR00061TIGR00061coord: 82..183
e-value: 2.0E-27
score: 93.5
IPR001787Ribosomal protein L21HAMAPMF_01363Ribosomal_L21coord: 81..184
score: 22.463289
NoneNo IPR availablePANTHERPTHR21349:SF250S RIBOSOMAL PROTEIN L21, CHLOROPLASTICcoord: 1..194
IPR018258Ribosomal protein L21, conserved sitePROSITEPS01169RIBOSOMAL_L21coord: 153..175
IPR036164L21-like superfamilySUPERFAMILY141091L21p-likecoord: 81..182

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g16510.1Cp4.1LG01g16510.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome