Cp4.1LG01g16420 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g16420
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	tRNA pseudouridine synthase
Location	Cp4.1LG01: 10072495 .. 10078600 (-)
RNA-Seq Expression	Cp4.1LG01g16420
Synteny	Cp4.1LG01g16420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACATATAAACTAGATGGTACAAAATAATAGATAACGATAGGCCAAAACAGAACATTCGTAAAAATTAAGGAAAACCATAAACAGAAGAAAAAACAGATAGTTTTGCGTCGACCAACTTACGTTAATTAGAGTGCAACAAAAAATCTCAAAATACGGATAACAAGTACCAGGATGCAAAATCTTAAAATCTCAAAATAAGGATGCAAGAAAAACAGGTTCCAGGTTCATGTTTTCCTAGTTTCAGGTTCCATCATCCTGCAGACATCAAAATGAACCCCAACCAGTGGCCTATGGCACTAGATAATGCCAAAACTCAGGCTCATCCGTGTTTCAACCCAAAAACCAATAAATTGGCTTTGGAGAAAGAGCCTGTTCTAGACTCCAGCCCTGATTATTCATAGTTTTTTATGGGGAAGCCATTTCGACTGTCATTAGGAATATTGGAATTTAACCGGAAAAACATGAATGGAACAACAGTCGGGGATAAAAAAAACAAAATTCCAGAAATACAAGGCCTGTGTTTAGATTTTCAATCCTCCAGATGCATTTGTTGCAATAAAAATATCCTCCAGATAACATACTTTCTTCAGCGTCGTAGTAACAATAAATCAAAAACATAATCTACAATGGTAAAGTTACAGATCGATTCACCAGAGCCCATTTCACGTCAAATCCAAAGAGACAAAACAAATTAAAGTATACTGCAAAGGGAAATAAGAGATCCTGCAAGTAGAGGTTAGAGATGGAATGAACAAACTATAGTCTTAGTAAATCGAGTAATATAACCGTGAATTCAATGGCGACCATACTTATCGAAACTGTTATACCTGACACTGGGAATAGAGAGGTGAAGAACAGGGCTGTGCCTTCGTAACTCGAGTTAAGGTTTCTACTTCCAATTTAGGGGACCTATATAATGGATGCCGCCGCTACAATTTGGCTGCTACGCTGTGCGGCGCATGAATTAAGTGATACAAGGGAAGAAATTAGGGTTCTCTCGCAACATAATTGGGCTAGGGCTACTTTTAAATCGTATTGGGCTTATAAAATATGAGCCCATTTGAAGCCCAAGCCCATGTGTTTATAACTGAGAAGCACGTGAGCATTGAGACGACATGTCGAACTGTCATTCGACATGTGGAAAATTAAAACGGCGAATACGACCTAGCGAAGCAAACCTCCATCGTCTACCTTGGGAACTTGTTCAACTCATGGCGGAGTTCAACCTTTAAACTTCCGCGAGAACACTTGCTACATTGTTTAAGCTTTGGAATCAGTGTTCGATTCTCATAATCTTGGCGGGAGCGGCGGAAATCAATGACGGAGAACCAGAAGCATAGGCTAGAGTTCAGTTCCGATTCATCACCTCAAAGGCCATTGAAAATTGGAAAGACTACGAACGAAGATCTCCCTGGCGATAAGGAGGAAGCAGAATCCATGAACCGTAACCCTGGAATCCAACGCTACCTTGTCGCAGTCGAATATATAGGAACTCGTTTCTCTGGTTCTCAGCAGCAGCCCAACTGTCGTACGGTGGTCGGCGTGCTTGAGGTACACCGCCTTTGCCATCTTTCATTACTCTGTGTATCGTTCTTAACCGATGAAACTCTTTGAAATGGAACATAATTTCTTTGTATCATTAAGAAACGGGTTGAACAATGAGTCTCTTGCATTACTCTATAAATGATTACTTTTACTTCTCAGGAAGCGTTCCGGAAGTTTATCGGTCAATCAGTTTCAGTGTTTTGTTCTAGCAGAACTGTAAGTTTTTCTTATTCTGGATATTTGTTCCTTTTTGTTATATGAAAATCAGTTTTATTGCTGCTATTAGAATGTTCAGTGTACTTGTAGGGTAGCTTCCACGACTTTTATCTTGCTGAATCTTCAGTCCTCTGGTAGTTCTTCTCCCACTAGCTTTGATGTGTGCAGAGAAGGATATGGAACTGAATTGGTAGTTTAACTGTAGGGTTTATGTTCTTTTGAGATGCATGAACTTGCCTCTATTGTTCTAAGTCGGATTTTAAAACAAAACCATTGGAACTGTGAGATCCCATATCAGTTAGAGAGGAGAACGAAGTATTCATTATAAGGGTGTAGAAACCTCTCCTTGATAGATGCGTGTTTAAAATCGTGAGACTGATGGAGATAGATAACGGGCCAAAGCGGACAATATCTGTTAGCGGTGGGCTTGGGCTATTACAAATGATATCAGAGCCAGACATCGAGCGGTGTGCTAGCGAGGGCATTGGTCCCTAAGGGGGGTGGATTGTGAGATCCCACATCGGTTGAAGAGGAGAATGAAGCATTCCTTAGAAGGGTGTAGAAACCTCTCCCTGACAGATGCGTTTTAAAATAGTGAGGCTGACGACGATACATAATGGGCCAAAGCGGACAATATCTGTTAGTGGTGGGCATGGGTTGTTACAAATGGTATCAGAGCCAGACACTGAGTGGTGTGCCAGCGAGGGTGCTGGCCCCCAAGGGGGTGGCTTGTGAGATCCTACATCGGTTGGAGAGGGGAACGAAGCTTTCCTTATAAGGGTGTGAAAACCTCTCCCTAACAGACACGTTTTAAAGCCGTAAGGCTGATGGCGATACATAACGGGCCAAAGCGGACAGTATTTGTTAGAGCCAGACACCGAGCGGCGTGCCAGCAAGGATGCTGGCCCCCAAGGGGGGTGGATTGTGAGATCCCACATTGGTTGGAGAAGGGAACGAAGCTTTCCTTATAAGGGAGTGAAAACCTCTCCCTAACAGACACGTTTTAAAACTGTAAGGCTGACGGCGATACATAACGGGCCAAAGCAGACAGTATTTGTTAGAGCCAGACACCGAGCGGTGTGCCAGCAAGGACGCTAGCCCCCAAGGGGGTGGATTTTGAGATCCCACATCGTTTGGAGAGGGGAACGAAGCATTCCTCATAAGGGTGTGGAAACCTCTCCTAATAGACGCATTTTAAAATTGTGAGACTAATGGCATACGTAATGGGCCATTGCAGATAATACCTGTTGTTAGTGGTGGGCTTGGGCTGTTATAGTTGTTTTTCTGACTTGTTATAGTTGTTTTTCTGACTTGTTTGTTGCAGACTAGAGTGCATCTTGCTCCATATTCACCTGTTTTGAGGTGTGCTCGGTAGAAAGGGATCTGTTATTGAGCCGCTCTATTGACTTGATTGATTGCTTTGATAATCGTATTCCCATGCGTCATATTACATTTCTTGCTACCATAAGTAGATTAAGTTATCCCATTCACGTTGTGACTTTCCTTCTTTTTTCAATGAAGGATGCTGGAGTACATGCCTTATCAAATGTTTGTCATGTTGATGTTGAGCGCATAAGCAAAAGAAAGCCCGGAGAAGTGGTTTGTCCCTTTGTATAGAATATAAGCATCTCTCTCCCCTTTTCATATGTACACATAATATATGCTAACTAGATGAGTAATTTCCCCTGAAAACTTTTGTTCACTCGTGGACTTTGTTGTTGAGATAAAACTTTCTTATCCTTGAAAACATGAGTTTGAAGAAATGGTGCTCGACTTTGCTACAGAGATGCTAACTTCTTTTGCCTAACTATGATGCAGTTACCACCTCATGAACCGGGTGTCGTTCGCAGGGCCGTGAATCATTTCTTACAGGTTCGGTTCTCTGCTAGCCAATCCCTTTTTTGAGCTACTTTTGCTTCTCTCGATTTTCGTTGTTTTGATCTTGTGCTTCATTTTTAACTCAACGATGCTAAGTTATAGTCGTGTTAAAATTTCCATTTTCAAATTATAAACTTTATCTTCCCTTTTAAATTTGCAAGCATGTTAGAATCTTCCCTTTTACCAGTACTATTGACTATTGTTCATAGGCGGTAGATAAGCGAGTGTAATGGCCCAAGCCCACCGCTAGCAGATATTGTCCTCTTTGGAATTTCCGTTTCGTGCTTCCCCCCAAAGTTTTAAAATGCGTCTGCTAGGGAGAGGTTTTCACACCAAGGATGTTTTGTTCCCCTTTGTTCCCCTATCCAACTTATGTGGGATCTCACAATTCACCCCCTTCGGGGCCCAGCATTCTTGCTGGCACACCGCATGGTGTCCAACCCCCCTTCAGGGCTCAGCCTCTTCATTGGCACATTGCTCATTGTCTGGCTCTGATACCATTTGTAACGGCCTAAGCCCACCGCTAACAGATATTGTCCTCTTTGGGCTTTTCCTTCCACACTTCCCCTCGAGGTTTTATAACGTGTCTGCTAAGGAGAGGTTTCCACACCCTTATAAAGAATGTTTCTGTAACAACCCGACTTATCTTATAAATAGCGGTTAGGGCCGTTACAAAAGATAATTTTATTTATTTAAAAATTAATGAAAACTATGCAAAGGGTTTGGCTTGCTAAGGGTTACCGCAAGTCTGGGTCGTTTTAAATTAATGAAACCTTGTGCAAATGCGTTTTAAAGCCTAGAGGAGAAGGCCGAAAGGAACACAGCCCAAAGAGGACAATATCTGCTAGCGGTAAGCCTGGGTCGTTACAGTTTCATTCCTCCTCCAACCGATGTGGGATCTCACAGCGAGCACCTAAGAAAAATCTTCCTTTTTCCAGCTTCAGCCTTTGCTTTTTATTGTATGAGACAAAGAAAATGATGAAAGGTATCTGTGTCTGTTTTGATTCCAGAAAAATGACGGTGATGTTACGGTAGTTGATGTTCGAAGTGTTCCTAATGATTATCATGCTAGATATAAAGCTCAAGAGCGTACGTGAGTATCGTCCATCCATGCTTTAGTAGTTGATACCATCATTGCCTATTAGACAGTAGAATTAATTGTCCATACGTACATAACACAATTTTTTGCATCTCATGAAACATTTTCAGATACTTTTATCGGTTAGTTTCTGGGCCAGAAACTTTGTCAAGCTTTGACAAGGATCGAGTATGGCACGTGCCCGAGATACTGAATATTGGAGCCATGCAGGTATGAACAATTAACAGTGCAATGCTGGAGATCATGTCGATTTGAAATTACATTCAGGAACTGATACAACATTATTGGAATGTATGAATTCAGGAGGCATGTAAAGTGCTTGTTGGGCATCATGACTTTAGCTCCTTCAGGGCAGCTGGTTGTCAGGTCACTTAATACTAAAACTATTTATGTTCCCAGCTTATTATACATTTTGTTTGTAACAATGCCAGGGCGTGGTCGGGGGATGAAACTGTGTACGGTGTAATGTAAATTAGTTTCGATGTGCAGTGCAGGCAAACTCCCCAATGAGAACTCTTGATGAACTAGACGTTTGTGAGGTGGTTTCGACGCCTTATTTTCCATCGTCAATGGAGCGAAAGCAAAGGCAGGGCAAAGAAGAATGCGAGAATGAAGTGCTACATTCTGAAAGTTACGAGGTTGGATTTGGGATCAGGAGAAGGCATCGTTGTTTCGTTGTGACAGCACGAGCACGCTCGTTTCTCTATCATCAGGTAATAAACATAACCAACCCTAAGAGACTTTCTTTTCTAGTAATGGAGAAAAGGGTTTTACGAGATTGATTGATTGATTGATTAGTTATTCTGGACTCGAATATTTCTTAGGTAAGACTGATGGTTGGCGTTCTTAAAGCGGTCGGAACCGGAGATCTAACCGTAGGAGATGGTAGGTGGTTGGACTGCAACATATACAATAGAACATGGCCGTTTGAAGGTAGCTAGCTAACAGTAATATGGTCTTCTGTGTTATTTGCTGCAGTAGAAAGAATCTTGGAAGCGAAGAATGTGAGTTCAGCAAGTCCGATGGCTCCTGCTTGTGGACTCTACCTAGGACATGTCAAATATGATCTACCGCCGCCACCGACAGCGCCCACTGAATGAAACCGGAGGTTCCTTTCTTTTCATTTCCAATGTTATTTATTTGTATTGATTGCCAATGCAACTCTCCTTATTGTTGACATTCGAAAATCTATAGTTGAGCTGAACCCAATCCCAATCCCCATCCCATTCTGAACGGATTTCTTCTCCTTTTTATGAATGGGATTTTTAATGCTCAACTTGTAACGGCCCAGATCCACCGCTAGTAGATATTGTCCTTTTTGGACTTTTCCTTTCAGGCTTCCCCTCAAGGCTTGAAAACGCGCCT

mRNA sequence

AAAACATATAAACTAGATGGTACAAAATAATAGATAACGATAGGCCAAAACAGAACATTCGTAAAAATTAAGGAAAACCATAAACAGAAGAAAAAACAGATAGTTTTGCGTCGACCAACTTACGTTAATTAGAGTGCAACAAAAAATCTCAAAATACGGATAACAAGTACCAGGATGCAAAATCTTAAAATCTCAAAATAAGGATGCAAGAAAAACAGGTTCCAGGTTCATGTTTTCCTAGTTTCAGGTTCCATCATCCTGCAGACATCAAAATGAACCCCAACCAGTGGCCTATGGCACTAGATAATGCCAAAACTCAGGCTCATCCGTGTTTCAACCCAAAAACCAATAAATTGGCTTTGGAGAAAGAGCCTGTTCTAGACTCCAGCCCTGATTATTCATAGTTTTTTATGGGGAAGCCATTTCGACTGTCATTAGGAATATTGGAATTTAACCGGAAAAACATGAATGGAACAACAGTCGGGGATAAAAAAAACAAAATTCCAGAAATACAAGGCCTGTGTTTAGATTTTCAATCCTCCAGATGCATTTGTTGCAATAAAAATATCCTCCAGATAACATACTTTCTTCAGCGTCGTAGTAACAATAAATCAAAAACATAATCTACAATGGTAAAGTTACAGATCGATTCACCAGAGCCCATTTCACGTCAAATCCAAAGAGACAAAACAAATTAAAGTATACTGCAAAGGGAAATAAGAGATCCTGCAAGTAGAGGTTAGAGATGGAATGAACAAACTATAGTCTTAGTAAATCGAGTAATATAACCGTGAATTCAATGGCGACCATACTTATCGAAACTGTTATACCTGACACTGGGAATAGAGAGGTGAAGAACAGGGCTGTGCCTTCGTAACTCGAGTTAAGGTTTCTACTTCCAATTTAGGGGACCTATATAATGGATGCCGCCGCTACAATTTGGCTGCTACGCTGTGCGGCGCATGAATTAAGTGATACAAGGGAAGAAATTAGGGTTCTCTCGCAACATAATTGGGCTAGGGCTACTTTTAAATCGTATTGGGCTTATAAAATATGAGCCCATTTGAAGCCCAAGCCCATGTGTTTATAACTGAGAAGCACGTGAGCATTGAGACGACATGTCGAACTGTCATTCGACATGTGGAAAATTAAAACGGCGAATACGACCTAGCGAAGCAAACCTCCATCGTCTACCTTGGGAACTTGTTCAACTCATGGCGGAGTTCAACCTTTAAACTTCCGCGAGAACACTTGCTACATTGTTTAAGCTTTGGAATCAGTGTTCGATTCTCATAATCTTGGCGGGAGCGGCGGAAATCAATGACGGAGAACCAGAAGCATAGGCTAGAGTTCAGTTCCGATTCATCACCTCAAAGGCCATTGAAAATTGGAAAGACTACGAACGAAGATCTCCCTGGCGATAAGGAGGAAGCAGAATCCATGAACCGTAACCCTGGAATCCAACGCTACCTTGTCGCAGTCGAATATATAGGAACTCGTTTCTCTGGTTCTCAGCAGCAGCCCAACTGTCGTACGGTGGTCGGCGTGCTTGAGGAAGCGTTCCGGAAGTTTATCGGTCAATCAGTTTCAGTGTTTTGTTCTAGCAGAACTTGTACTTGTAGGGTAGCTTCCACGACTTTTATCTTGCTGAATCTTCAGTCCTCTGGTAGTTCTTCTCCCACTAGCTTTGATGTGTGCAGAGAAGGATATGGAACTGAATTGGATGCTGGAGTACATGCCTTATCAAATGTTTGTCATGTTGATGTTGAGCGCATAAGCAAAAGAAAGCCCGGAGAAGTGTTACCACCTCATGAACCGGGTGTCGTTCGCAGGGCCGTGAATCATTTCTTACAGAAAAATGACGGTGATGTTACGGTAGTTGATGTTCGAAGTGTTCCTAATGATTATCATGCTAGATATAAAGCTCAAGAGCGTACATACTTTTATCGGTTAGTTTCTGGGCCAGAAACTTTGTCAAGCTTTGACAAGGATCGAGTATGGCACGTGCCCGAGATACTGAATATTGGAGCCATGCAGGAGGCATGTAAAGTGCTTGTTGGGCATCATGACTTTAGCTCCTTCAGGGCAGCTGGTTGTCAGGCAAACTCCCCAATGAGAACTCTTGATGAACTAGACGTTTGTGAGGTGGTTTCGACGCCTTATTTTCCATCGTCAATGGAGCGAAAGCAAAGGCAGGGCAAAGAAGAATGCGAGAATGAAGTGCTACATTCTGAAAGTTACGAGGTTGGATTTGGGATCAGGAGAAGGCATCGTTGTTTCGTTGTGACAGCACGAGCACGCTCGTTTCTCTATCATCAGGTAAGACTGATGGTTGGCGTTCTTAAAGCGGTCGGAACCGGAGATCTAACCGTAGGAGATGTAGAAAGAATCTTGGAAGCGAAGAATGTGAGTTCAGCAAGTCCGATGGCTCCTGCTTGTGGACTCTACCTAGGACATGTCAAATATGATCTACCGCCGCCACCGACAGCGCCCACTGAATGAAACCGGAGGTTCCTTTCTTTTCATTTCCAATGTTATTTATTTGTATTGATTGCCAATGCAACTCTCCTTATTGTTGACATTCGAAAATCTATAGTTGAGCTGAACCCAATCCCAATCCCCATCCCATTCTGAACGGATTTCTTCTCCTTTTTATGAATGGGATTTTTAATGCTCAACTTGTAACGGCCCAGATCCACCGCTAGTAGATATTGTCCTTTTTGGACTTTTCCTTTCAGGCTTCCCCTCAAGGCTTGAAAACGCGCCT

Coding sequence (CDS)

ATGACGGAGAACCAGAAGCATAGGCTAGAGTTCAGTTCCGATTCATCACCTCAAAGGCCATTGAAAATTGGAAAGACTACGAACGAAGATCTCCCTGGCGATAAGGAGGAAGCAGAATCCATGAACCGTAACCCTGGAATCCAACGCTACCTTGTCGCAGTCGAATATATAGGAACTCGTTTCTCTGGTTCTCAGCAGCAGCCCAACTGTCGTACGGTGGTCGGCGTGCTTGAGGAAGCGTTCCGGAAGTTTATCGGTCAATCAGTTTCAGTGTTTTGTTCTAGCAGAACTTGTACTTGTAGGGTAGCTTCCACGACTTTTATCTTGCTGAATCTTCAGTCCTCTGGTAGTTCTTCTCCCACTAGCTTTGATGTGTGCAGAGAAGGATATGGAACTGAATTGGATGCTGGAGTACATGCCTTATCAAATGTTTGTCATGTTGATGTTGAGCGCATAAGCAAAAGAAAGCCCGGAGAAGTGTTACCACCTCATGAACCGGGTGTCGTTCGCAGGGCCGTGAATCATTTCTTACAGAAAAATGACGGTGATGTTACGGTAGTTGATGTTCGAAGTGTTCCTAATGATTATCATGCTAGATATAAAGCTCAAGAGCGTACATACTTTTATCGGTTAGTTTCTGGGCCAGAAACTTTGTCAAGCTTTGACAAGGATCGAGTATGGCACGTGCCCGAGATACTGAATATTGGAGCCATGCAGGAGGCATGTAAAGTGCTTGTTGGGCATCATGACTTTAGCTCCTTCAGGGCAGCTGGTTGTCAGGCAAACTCCCCAATGAGAACTCTTGATGAACTAGACGTTTGTGAGGTGGTTTCGACGCCTTATTTTCCATCGTCAATGGAGCGAAAGCAAAGGCAGGGCAAAGAAGAATGCGAGAATGAAGTGCTACATTCTGAAAGTTACGAGGTTGGATTTGGGATCAGGAGAAGGCATCGTTGTTTCGTTGTGACAGCACGAGCACGCTCGTTTCTCTATCATCAGGTAAGACTGATGGTTGGCGTTCTTAAAGCGGTCGGAACCGGAGATCTAACCGTAGGAGATGTAGAAAGAATCTTGGAAGCGAAGAATGTGAGTTCAGCAAGTCCGATGGCTCCTGCTTGTGGACTCTACCTAGGACATGTCAAATATGATCTACCGCCGCCACCGACAGCGCCCACTGAATGA

Protein sequence

MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLPGDKEEAESMNRNPGIQRYLVAVEYIGTRFSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTCTCRVASTTFILLNLQSSGSSSPTSFDVCREGYGTELDAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEECENEVLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKYDLPPPPTAPTE

Homology

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BLAST of Cp4.1LG01g16420 vs. ExPASy Swiss-Prot
Match: Q2WAT0 (tRNA pseudouridine synthase A OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) OX=342108 GN=truA PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 5.0e-40
Identity = 118/344 (34.30%), Postives = 155/344 (45.06%), Query Frame = 0


Query: 49  RYLVAVEYIGTRFSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTCTCRVASTTFI 108
           RY + VEY GT F+G Q+Q    +V G+LE+A  K  G   ++  + RT           
Sbjct: 3   RYRLLVEYDGTPFNGWQRQDKGLSVQGILEKAVEKLCGVPCTLHAAGRT----------- 62

Query: 109 LLNLQSSGSSSPTSFDVCREGYGTELDAGVHALSNVCHVDVERISKRKPGEVLPPHEPGV 168
                                     DAGVHA   V HVD+ R            +    
Sbjct: 63  --------------------------DAGVHATGQVAHVDLPR-----------DYPADT 122

Query: 169 VRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWH 228
           VR A+N+ ++     V VV    V  D+HAR+ A  R Y YR+V+    L + D+ R W 
Sbjct: 123 VRDALNYHMKPK--PVAVVAAELVDEDFHARFSAVGRAYLYRIVNRRAPL-ALDQHRAWW 182

Query: 229 VPEILNIGAMQEACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVVSTPYFPSSMER 288
           VP  L+  AM E  + L+GHHDFS+FRA+ CQA SPM+TLD LDV               
Sbjct: 183 VPVALDAEAMAEGARRLLGHHDFSTFRASECQAKSPMKTLDVLDVT-------------- 242

Query: 289 KQRQGKEECENEVLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGD 348
                               VG  IR       + A ARSFL+HQVR MVG LK VG G 
Sbjct: 243 -------------------RVGEEIR-------IVAEARSFLHHQVRNMVGTLKLVGEGK 255

Query: 349 LTVGDVERILEAKNVSSASPMAPACGLYLGHVKYDLPPPPTAPT 393
            +  D+ ++LEA++ +   P APA GL L  V Y      + PT
Sbjct: 303 WSPDDMAKVLEARDRTKGGPTAPAAGLVLTGVSYSASGGKSGPT 255

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BLAST of Cp4.1LG01g16420 vs. ExPASy Swiss-Prot
Match: B6IPI0 (tRNA pseudouridine synthase A OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=truA PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 8.5e-40
Identity = 118/336 (35.12%), Postives = 156/336 (46.43%), Query Frame = 0


Query: 47  IQRYLVAVEYIGTRFSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTCTCRVASTT 106
           +QR+ + +EY G  F G Q+Q N  +V   LEEA  +F  ++V+VFC+ RT         
Sbjct: 1   MQRWKLTLEYDGRPFVGWQRQDNGPSVQQALEEAIYRFTQETVTVFCAGRT--------- 60

Query: 107 FILLNLQSSGSSSPTSFDVCREGYGTELDAGVHALSNVCHVDVERISKRKPGEVLPPHEP 166
                                       DAGVHAL+ V  VD+ R +             
Sbjct: 61  ----------------------------DAGVHALAMVASVDLAREATADK--------- 120

Query: 167 GVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRV 226
             V+ A+N  L+ +   V V+ V  V  D+HAR+    R Y YR+++     ++ +  RV
Sbjct: 121 --VQAALNFHLKPH--PVAVLRVEPVAPDFHARFSCLGRAYLYRILN-RRAPAALEAGRV 180

Query: 227 WHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVVSTPYFPSSM 286
           WHV   L+  AM EA + LVG HDFSSFRA+ CQA SP++TL +L V             
Sbjct: 181 WHVQGGLDAEAMHEAAQRLVGQHDFSSFRASLCQAKSPVKTLSDLSVA------------ 240

Query: 287 ERKQRQGKEECENEVLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGT 346
                                 VG  +R       + ARARSFL+HQVR MVG LK VG 
Sbjct: 241 ---------------------RVGEEVR-------IVARARSFLHHQVRNMVGTLKLVGE 245

Query: 347 GDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKY 383
           G  T  DV R L A+N S+A P APA GLY     Y
Sbjct: 301 GRWTADDVSRALAARNRSAAGPTAPAAGLYFTEAWY 245

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BLAST of Cp4.1LG01g16420 vs. ExPASy Swiss-Prot
Match: A7IKI9 (tRNA pseudouridine synthase A OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) OX=78245 GN=truA PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 8.5e-40
Identity = 115/334 (34.43%), Postives = 156/334 (46.71%), Query Frame = 0


Query: 49  RYLVAVEYIGTRFSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTCTCRVASTTFI 108
           RY + +EY GT ++G Q Q + +TV G L +AF++F G+ V V  + RT           
Sbjct: 3   RYKLTIEYDGTPYAGWQIQADQQTVQGALAQAFKRFCGEDVHVAGAGRT----------- 62

Query: 109 LLNLQSSGSSSPTSFDVCREGYGTELDAGVHALSNVCHVDVERISKRKPGEVLPPHEPGV 168
                                     DAGVHA   V HVD+ R                 
Sbjct: 63  --------------------------DAGVHATGQVAHVDLSR-----------HWRSDT 122

Query: 169 VRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWH 228
           VR A+   L+ +   + V+    VP+ + AR+ A +R Y YR+++    L + D+DR W 
Sbjct: 123 VRDAMTAQLRPH--PIAVLSAEEVPDSFDARFSATKRHYLYRIINRRPDL-ALDRDRAWR 182

Query: 229 VPEILNIGAMQEACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVVSTPYFPSSMER 288
           +P+ L+  AM EA + L+G HDFS+FRAA CQA SP++TLD+LDV               
Sbjct: 183 IPQKLDAQAMHEAAQRLLGKHDFSTFRAAECQAASPLKTLDQLDV--------------- 242

Query: 289 KQRQGKEECENEVLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGD 348
             R G E                 IR       V   ARSFL+HQVR MVG L  VG G 
Sbjct: 243 -SRSGDE-----------------IR-------VITSARSFLHHQVRSMVGSLMRVGEGR 245

Query: 349 LTVGDVERILEAKNVSSASPMAPACGLYLGHVKY 383
            +  D+E  L+A + +   PMAPA GLYL  V Y
Sbjct: 303 WSADDLEAALKAADRTRCGPMAPAAGLYLAAVSY 245

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BLAST of Cp4.1LG01g16420 vs. ExPASy Swiss-Prot
Match: A9ILJ7 (tRNA pseudouridine synthase A OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) OX=382640 GN=truA PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.5e-39
Identity = 106/338 (31.36%), Postives = 162/338 (47.93%), Query Frame = 0


Query: 47  IQRYLVAVEYIGTRFSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTCTCRVASTT 106
           + R+ + +EY G+ ++G Q+Q    T+ G LE+A  +F GQ +++  + RT         
Sbjct: 1   MSRFKLTLEYDGSNYAGWQRQAKLHTIQGALEQAIFRFSGQQLTITTAGRT--------- 60

Query: 107 FILLNLQSSGSSSPTSFDVCREGYGTELDAGVHALSNVCHVDVERISKRKPGEVLPPHEP 166
                                       DAGVHA   V HVD  +          PPH  
Sbjct: 61  ----------------------------DAGVHATGQVAHVDFIK--------NWPPH-- 120

Query: 167 GVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVS--GPETLSSFDKD 226
             VR A+N  L++    +++++V +VP+D+ AR+ A +R Y +++++   P  L++    
Sbjct: 121 -TVRDALNALLRQQSEAISILNVENVPDDFDARFSAIKRHYLFKILNRRSPPALNA---K 180

Query: 227 RVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVVSTPYFPS 286
           RVW +P+ LN  AM EA + LVG HDF++FR+A CQA SP+RTL+ LD+           
Sbjct: 181 RVWWIPKPLNAQAMHEAAQKLVGQHDFTTFRSAHCQAKSPIRTLERLDI----------- 240

Query: 287 SMERKQRQGKEECENEVLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAV 346
                Q++G+E                          + A+ARSFL+HQ+R   G L  V
Sbjct: 241 -----QKEGEE------------------------IFIYAKARSFLHHQIRSFAGSLMEV 247

Query: 347 GTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKY 383
           G G  T  D+E  L AK+      +AP  GLYL  V+Y
Sbjct: 301 GIGRWTAQDLEAALHAKDRKRCGVVAPPSGLYLTKVEY 247

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BLAST of Cp4.1LG01g16420 vs. ExPASy Swiss-Prot
Match: A7HPQ3 (tRNA pseudouridine synthase A OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) OX=402881 GN=truA PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 9.4e-39
Identity = 110/335 (32.84%), Postives = 155/335 (46.27%), Query Frame = 0


Query: 49  RYLVAVEYIGTRFSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTCTCRVASTTFI 108
           RY + +EY G+ F G Q Q N R+V  VLEE  + F GQ + +F + RT           
Sbjct: 3   RYKLTIEYDGSPFVGWQAQTNGRSVQQVLEEGIKGFCGQELKIFGAGRT----------- 62

Query: 109 LLNLQSSGSSSPTSFDVCREGYGTELDAGVHALSNVCHVDVERISKRKPGEVLPPHEPGV 168
                                     DAGVHAL  V HVD E            P  P  
Sbjct: 63  --------------------------DAGVHALGQVAHVDFE-----------TPVAPDT 122

Query: 169 VRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWH 228
           +R AVN  ++ +   V +V+   VP+ + AR+ A +R Y YR+V+    L + D+ + W 
Sbjct: 123 LRDAVNAHMRPH--PVAIVEAEEVPDSFEARFSAVKRHYMYRIVNRRAPL-TLDRGQAWL 182

Query: 229 VPEILNIGAMQEACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVVSTPYFPSSMER 288
           V + L+  AM +A + LVG+HDF++FR+  CQA SP++T+DE+ V               
Sbjct: 183 VHKTLDADAMHDAAQALVGNHDFTTFRSVQCQAKSPVKTVDEISVSRYA----------- 242

Query: 289 KQRQGKEECENEVLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGD 348
                 +E E                       +  RARSFL++QVR  VG LK VG G 
Sbjct: 243 ------DEIE-----------------------IVCRARSFLHNQVRSFVGTLKMVGDGS 246

Query: 349 LTVGDVERILEAKNVSSASPMAPACGLYLGHVKYD 384
            T   VE+ L AK+ ++  P+AP  GLYL  V Y+
Sbjct: 303 WTRRKVEKALAAKDRAACGPVAPPDGLYLLQVDYE 246

[Close]

BLAST of Cp4.1LG01g16420 vs. NCBI nr
Match: XP_023524389.1 (uncharacterized protein LOC111788293 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 702 bits (1813), Expect = 2.12e-254
Identity = 356/393 (90.59%), Postives = 356/393 (90.59%), Query Frame = 0


Query: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLPGDKEEAESMNRNPGIQRYLVAVEYIGTR 60
           MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLPGDKEEAESMNRNPGIQRYLVAVEYIGTR
Sbjct: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLPGDKEEAESMNRNPGIQRYLVAVEYIGTR 60

Query: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTCTCRVASTTFILLNLQSSGSSSP 120
           FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRT                       
Sbjct: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRT----------------------- 120

Query: 121 TSFDVCREGYGTELDAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVRRAVNHFLQKN 180
                         DAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVRRAVNHFLQKN
Sbjct: 121 --------------DAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVRRAVNHFLQKN 180

Query: 181 DGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQE 240
           DGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQE
Sbjct: 181 DGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQE 240

Query: 241 ACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEECENE 300
           ACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEECENE
Sbjct: 241 ACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEECENE 300

Query: 301 VLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEA 360
           VLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEA
Sbjct: 301 VLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEA 356

Query: 361 KNVSSASPMAPACGLYLGHVKYDLPPPPTAPTE 393
           KNVSSASPMAPACGLYLGHVKYDLPPPPTAPTE
Sbjct: 361 KNVSSASPMAPACGLYLGHVKYDLPPPPTAPTE 356

[Close]

BLAST of Cp4.1LG01g16420 vs. NCBI nr
Match: XP_022998153.1 (uncharacterized protein LOC111492882 [Cucurbita maxima])

HSP 1 Score: 688 bits (1776), Expect = 9.22e-249
Identity = 350/393 (89.06%), Postives = 352/393 (89.57%), Query Frame = 0


Query: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLPGDKEEAESMNRNPGIQRYLVAVEYIGTR 60
           MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLPGDKEEAESMNRNPGIQRYLVAVEYIGTR
Sbjct: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLPGDKEEAESMNRNPGIQRYLVAVEYIGTR 60

Query: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTCTCRVASTTFILLNLQSSGSSSP 120
           FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRT                       
Sbjct: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRT----------------------- 120

Query: 121 TSFDVCREGYGTELDAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVRRAVNHFLQKN 180
                         DAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVRRAVNHFLQKN
Sbjct: 121 --------------DAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVRRAVNHFLQKN 180

Query: 181 DGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQE 240
           DGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQE
Sbjct: 181 DGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQE 240

Query: 241 ACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEECENE 300
           ACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEV+STPYFPSSMERKQRQGKEE ENE
Sbjct: 241 ACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVISTPYFPSSMERKQRQGKEEGENE 300

Query: 301 VLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEA 360
           VLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLK VGTGDLTVGDVERILEA
Sbjct: 301 VLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKVVGTGDLTVGDVERILEA 356

Query: 361 KNVSSASPMAPACGLYLGHVKYDLPPPPTAPTE 393
           KNVSSASPMAPACGLYLGHVKYDLPPP  AP+E
Sbjct: 361 KNVSSASPMAPACGLYLGHVKYDLPPPLPAPSE 356

[Close]

BLAST of Cp4.1LG01g16420 vs. NCBI nr
Match: XP_022956590.1 (uncharacterized protein LOC111458281 [Cucurbita moschata])

HSP 1 Score: 687 bits (1772), Expect = 3.75e-248
Identity = 351/393 (89.31%), Postives = 351/393 (89.31%), Query Frame = 0


Query: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLPGDKEEAESMNRNPGIQRYLVAVEYIGTR 60
           MTENQKHRLEFSSDSSPQRPLKIGKTTNEDL GDKEEAESMNRNPGIQRYLVAVEYIGTR
Sbjct: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLLGDKEEAESMNRNPGIQRYLVAVEYIGTR 60

Query: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTCTCRVASTTFILLNLQSSGSSSP 120
           FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRT                       
Sbjct: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRT----------------------- 120

Query: 121 TSFDVCREGYGTELDAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVRRAVNHFLQKN 180
                         DAGVHALSNVCHVDVERISKRKPGEVLPPHEP VVRRAVNHFLQKN
Sbjct: 121 --------------DAGVHALSNVCHVDVERISKRKPGEVLPPHEPSVVRRAVNHFLQKN 180

Query: 181 DGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQE 240
           DGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQE
Sbjct: 181 DGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQE 240

Query: 241 ACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEECENE 300
           ACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEE EN 
Sbjct: 241 ACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEEGENG 300

Query: 301 VLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEA 360
           VLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEA
Sbjct: 301 VLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEA 356

Query: 361 KNVSSASPMAPACGLYLGHVKYDLPPPPTAPTE 393
           KNVSSASPMAPACGLYLGHVKYDLPPPP APTE
Sbjct: 361 KNVSSASPMAPACGLYLGHVKYDLPPPPPAPTE 356

[Close]

BLAST of Cp4.1LG01g16420 vs. NCBI nr
Match: KAG6601629.1 (hypothetical protein SDJN03_06862, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 684 bits (1766), Expect = 2.97e-247
Identity = 351/393 (89.31%), Postives = 351/393 (89.31%), Query Frame = 0


Query: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLPGDKEEAESMNRNPGIQRYLVAVEYIGTR 60
           MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLPGDKEEAESMNRNPGIQRYLVAVEYIGTR
Sbjct: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLPGDKEEAESMNRNPGIQRYLVAVEYIGTR 60

Query: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTCTCRVASTTFILLNLQSSGSSSP 120
           FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRT                       
Sbjct: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRT----------------------- 120

Query: 121 TSFDVCREGYGTELDAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVRRAVNHFLQKN 180
                         DAGVHALSNVCHVDVERISKRKPGEVLPPHEP VVRRAVNHFLQKN
Sbjct: 121 --------------DAGVHALSNVCHVDVERISKRKPGEVLPPHEPSVVRRAVNHFLQKN 180

Query: 181 DGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQE 240
           DGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQE
Sbjct: 181 DGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQE 240

Query: 241 ACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEECENE 300
           ACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKE  EN 
Sbjct: 241 ACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKE-GENG 300

Query: 301 VLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEA 360
           VLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEA
Sbjct: 301 VLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEA 355

Query: 361 KNVSSASPMAPACGLYLGHVKYDLPPPPTAPTE 393
           KNVSSASPMAPACGLYLGHVKYDLPPPP APTE
Sbjct: 361 KNVSSASPMAPACGLYLGHVKYDLPPPPPAPTE 355

[Close]

BLAST of Cp4.1LG01g16420 vs. NCBI nr
Match: KAG7032390.1 (truA, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 674 bits (1739), Expect = 5.61e-243
Identity = 350/399 (87.72%), Postives = 350/399 (87.72%), Query Frame = 0


Query: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLPGDKEEAESMNRNPGIQRYLVAVEYIGTR 60
           MTENQKHRLEFSSDSSPQRPLKIGKTTNEDL GDKEEAESMNRNPGIQRYLVAVEYIGTR
Sbjct: 5   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLLGDKEEAESMNRNPGIQRYLVAVEYIGTR 64

Query: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTCTCRVASTTFILLNLQSSGSSSP 120
           FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRT                       
Sbjct: 65  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRT----------------------- 124

Query: 121 TSFDVCREGYGTELDAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVRRAVNHFLQKN 180
                         DAGVHALSNVCHVDVERISKRKPGEVLPPHEP VVRRAVNHFLQKN
Sbjct: 125 --------------DAGVHALSNVCHVDVERISKRKPGEVLPPHEPSVVRRAVNHFLQKN 184

Query: 181 DGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQE 240
           DGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQE
Sbjct: 185 DGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQE 244

Query: 241 ACKVLVGHHDFSSFRAAGCQ------ANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGK 300
           ACKVLVGHHDFSSFRAAGCQ      ANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGK
Sbjct: 245 ACKVLVGHHDFSSFRAAGCQFRCAVQANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGK 304

Query: 301 EECENEVLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDV 360
           E  EN VLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDV
Sbjct: 305 E-GENGVLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDV 364

Query: 361 ERILEAKNVSSASPMAPACGLYLGHVKYDLPPPPTAPTE 393
           ERILEAKNVSSASPMAPACGLYLGHVKYDLPPPP APTE
Sbjct: 365 ERILEAKNVSSASPMAPACGLYLGHVKYDLPPPPPAPTE 365

[Close]

BLAST of Cp4.1LG01g16420 vs. ExPASy TrEMBL
Match: A0A6J1KFZ8 (tRNA pseudouridine synthase OS=Cucurbita maxima OX=3661 GN=LOC111492882 PE=3 SV=1)

HSP 1 Score: 688 bits (1776), Expect = 4.46e-249
Identity = 350/393 (89.06%), Postives = 352/393 (89.57%), Query Frame = 0


Query: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLPGDKEEAESMNRNPGIQRYLVAVEYIGTR 60
           MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLPGDKEEAESMNRNPGIQRYLVAVEYIGTR
Sbjct: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLPGDKEEAESMNRNPGIQRYLVAVEYIGTR 60

Query: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTCTCRVASTTFILLNLQSSGSSSP 120
           FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRT                       
Sbjct: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRT----------------------- 120

Query: 121 TSFDVCREGYGTELDAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVRRAVNHFLQKN 180
                         DAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVRRAVNHFLQKN
Sbjct: 121 --------------DAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVRRAVNHFLQKN 180

Query: 181 DGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQE 240
           DGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQE
Sbjct: 181 DGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQE 240

Query: 241 ACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEECENE 300
           ACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEV+STPYFPSSMERKQRQGKEE ENE
Sbjct: 241 ACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVISTPYFPSSMERKQRQGKEEGENE 300

Query: 301 VLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEA 360
           VLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLK VGTGDLTVGDVERILEA
Sbjct: 301 VLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKVVGTGDLTVGDVERILEA 356

Query: 361 KNVSSASPMAPACGLYLGHVKYDLPPPPTAPTE 393
           KNVSSASPMAPACGLYLGHVKYDLPPP  AP+E
Sbjct: 361 KNVSSASPMAPACGLYLGHVKYDLPPPLPAPSE 356

[Close]

BLAST of Cp4.1LG01g16420 vs. ExPASy TrEMBL
Match: A0A6J1GY72 (tRNA pseudouridine synthase OS=Cucurbita moschata OX=3662 GN=LOC111458281 PE=3 SV=1)

HSP 1 Score: 687 bits (1772), Expect = 1.82e-248
Identity = 351/393 (89.31%), Postives = 351/393 (89.31%), Query Frame = 0


Query: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLPGDKEEAESMNRNPGIQRYLVAVEYIGTR 60
           MTENQKHRLEFSSDSSPQRPLKIGKTTNEDL GDKEEAESMNRNPGIQRYLVAVEYIGTR
Sbjct: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLLGDKEEAESMNRNPGIQRYLVAVEYIGTR 60

Query: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTCTCRVASTTFILLNLQSSGSSSP 120
           FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRT                       
Sbjct: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRT----------------------- 120

Query: 121 TSFDVCREGYGTELDAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVRRAVNHFLQKN 180
                         DAGVHALSNVCHVDVERISKRKPGEVLPPHEP VVRRAVNHFLQKN
Sbjct: 121 --------------DAGVHALSNVCHVDVERISKRKPGEVLPPHEPSVVRRAVNHFLQKN 180

Query: 181 DGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQE 240
           DGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQE
Sbjct: 181 DGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQE 240

Query: 241 ACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEECENE 300
           ACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEE EN 
Sbjct: 241 ACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEEGENG 300

Query: 301 VLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEA 360
           VLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEA
Sbjct: 301 VLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEA 356

Query: 361 KNVSSASPMAPACGLYLGHVKYDLPPPPTAPTE 393
           KNVSSASPMAPACGLYLGHVKYDLPPPP APTE
Sbjct: 361 KNVSSASPMAPACGLYLGHVKYDLPPPPPAPTE 356

[Close]

BLAST of Cp4.1LG01g16420 vs. ExPASy TrEMBL
Match: A0A5D3CZZ6 (tRNA pseudouridine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002730 PE=3 SV=1)

HSP 1 Score: 619 bits (1595), Expect = 1.44e-221
Identity = 315/388 (81.19%), Postives = 329/388 (84.79%), Query Frame = 0


Query: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLPGDKEEAESMNRNPGIQRYLVAVEYIGTR 60
           MTENQKH LE S DSS QRPLKIGKTT++   GD+EEAE+MN  PGIQRYLVAVEYIGTR
Sbjct: 1   MTENQKHGLELSIDSSSQRPLKIGKTTDQVFHGDEEEAETMNPKPGIQRYLVAVEYIGTR 60

Query: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTCTCRVASTTFILLNLQSSGSSSP 120
           FSGSQQQPNCRTVVG LEEAF+KFIGQ VSVFCSSRT                       
Sbjct: 61  FSGSQQQPNCRTVVGALEEAFQKFIGQPVSVFCSSRT----------------------- 120

Query: 121 TSFDVCREGYGTELDAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVRRAVNHFLQKN 180
                         DAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVV +AVNHFLQK+
Sbjct: 121 --------------DAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVHKAVNHFLQKH 180

Query: 181 DGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQE 240
           +GDVTVVDVRSVPND+HARYKAQERTYFYRLVSGPE LSSF+KDR WHVPE LNIGAMQE
Sbjct: 181 EGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPEALSSFEKDRAWHVPETLNIGAMQE 240

Query: 241 ACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEECENE 300
           ACKVLVGHHDFSSFRAAGCQANSP+RTLDEL+VCEV STPYFP+SMERKQRQGKEE ENE
Sbjct: 241 ACKVLVGHHDFSSFRAAGCQANSPIRTLDELNVCEVASTPYFPTSMERKQRQGKEESENE 300

Query: 301 VLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEA 360
             HSE+ EVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEA
Sbjct: 301 EPHSETCEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEA 351

Query: 361 KNVSSASPMAPACGLYLGHVKYDLPPPP 388
           KNVSSA PMAPACGLYLGHVKYDLPP P
Sbjct: 361 KNVSSARPMAPACGLYLGHVKYDLPPAP 351

[Close]

BLAST of Cp4.1LG01g16420 vs. ExPASy TrEMBL
Match: A0A1S3BDG9 (tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103488841 PE=3 SV=1)

HSP 1 Score: 619 bits (1595), Expect = 1.44e-221
Identity = 315/388 (81.19%), Postives = 329/388 (84.79%), Query Frame = 0


Query: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLPGDKEEAESMNRNPGIQRYLVAVEYIGTR 60
           MTENQKH LE S DSS QRPLKIGKTT++   GD+EEAE+MN  PGIQRYLVAVEYIGTR
Sbjct: 1   MTENQKHGLELSIDSSSQRPLKIGKTTDQVFHGDEEEAETMNPKPGIQRYLVAVEYIGTR 60

Query: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTCTCRVASTTFILLNLQSSGSSSP 120
           FSGSQQQPNCRTVVG LEEAF+KFIGQ VSVFCSSRT                       
Sbjct: 61  FSGSQQQPNCRTVVGALEEAFQKFIGQPVSVFCSSRT----------------------- 120

Query: 121 TSFDVCREGYGTELDAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVRRAVNHFLQKN 180
                         DAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVV +AVNHFLQK+
Sbjct: 121 --------------DAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVHKAVNHFLQKH 180

Query: 181 DGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQE 240
           +GDVTVVDVRSVPND+HARYKAQERTYFYRLVSGPE LSSF+KDR WHVPE LNIGAMQE
Sbjct: 181 EGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPEALSSFEKDRAWHVPETLNIGAMQE 240

Query: 241 ACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEECENE 300
           ACKVLVGHHDFSSFRAAGCQANSP+RTLDEL+VCEV STPYFP+SMERKQRQGKEE ENE
Sbjct: 241 ACKVLVGHHDFSSFRAAGCQANSPIRTLDELNVCEVASTPYFPTSMERKQRQGKEESENE 300

Query: 301 VLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEA 360
             HSE+ EVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEA
Sbjct: 301 EPHSETCEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEA 351

Query: 361 KNVSSASPMAPACGLYLGHVKYDLPPPP 388
           KNVSSA PMAPACGLYLGHVKYDLPP P
Sbjct: 361 KNVSSARPMAPACGLYLGHVKYDLPPAP 351

[Close]

BLAST of Cp4.1LG01g16420 vs. ExPASy TrEMBL
Match: A0A1S3BDY4 (tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103488841 PE=3 SV=1)

HSP 1 Score: 612 bits (1579), Expect = 3.80e-219
Identity = 314/388 (80.93%), Postives = 328/388 (84.54%), Query Frame = 0


Query: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLPGDKEEAESMNRNPGIQRYLVAVEYIGTR 60
           MTENQKH LE S DSS QRPLKIGKTT++   GD+EEAE+MN  PGIQRYLVAVEYIGTR
Sbjct: 1   MTENQKHGLELSIDSSSQRPLKIGKTTDQVFHGDEEEAETMNPKPGIQRYLVAVEYIGTR 60

Query: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTCTCRVASTTFILLNLQSSGSSSP 120
           FSGSQQQPNCRTVVG LEEAF+KFIGQ VSVFCSSRT                       
Sbjct: 61  FSGSQQQPNCRTVVGALEEAFQKFIGQPVSVFCSSRT----------------------- 120

Query: 121 TSFDVCREGYGTELDAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVRRAVNHFLQKN 180
                         DAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVV +AVNHFLQK+
Sbjct: 121 --------------DAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVHKAVNHFLQKH 180

Query: 181 DGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQE 240
           +GDVTVVDVRSVPND+HARYKAQERTYFYRLVSGPE LSSF+KDR WHVPE LNIGAMQE
Sbjct: 181 EGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPEALSSFEKDRAWHVPETLNIGAMQE 240

Query: 241 ACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEECENE 300
           ACKVLVGHHDFSSFRAAGCQANSP+RTLDEL+VCEV STPYFP+SMERKQRQGKEE ENE
Sbjct: 241 ACKVLVGHHDFSSFRAAGCQANSPIRTLDELNVCEVASTPYFPTSMERKQRQGKEESENE 300

Query: 301 VLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEA 360
             HSE+ EVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGD ERILEA
Sbjct: 301 EPHSETCEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGD-ERILEA 350

Query: 361 KNVSSASPMAPACGLYLGHVKYDLPPPP 388
           KNVSSA PMAPACGLYLGHVKYDLPP P
Sbjct: 361 KNVSSARPMAPACGLYLGHVKYDLPPAP 350

[Close]

BLAST of Cp4.1LG01g16420 vs. TAIR 10
Match: AT1G09800.1 (Pseudouridine synthase family protein )

HSP 1 Score: 442.2 bits (1136), Expect = 4.4e-124
Identity = 242/409 (59.17%), Postives = 279/409 (68.22%), Query Frame = 0


Query: 1   MTENQKHRLE-FSSDSSPQRPLKIGKTTN-EDLPGDKEEA----ESMNR-NPGIQRYLVA 60
           M++N KH L+  +S+ S +R  K+ +     D   ++++     ESMN  NP +QRYLVA
Sbjct: 1   MSDNLKHPLDCTASEESLERLSKVARIEGFSDEESEEQQGLADLESMNPVNPRVQRYLVA 60

Query: 61  VEYIGTRFSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTCTCRVASTTFILLNLQ 120
           +EYIGTRFSGSQQQ   RTVVGVL+EAF KFIGQ V +FCSSRT                
Sbjct: 61  IEYIGTRFSGSQQQAKDRTVVGVLQEAFHKFIGQPVKIFCSSRT---------------- 120

Query: 121 SSGSSSPTSFDVCREGYGTELDAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVRRAV 180
                                DAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVV+RAV
Sbjct: 121 ---------------------DAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVQRAV 180

Query: 181 NHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWHVPEIL 240
           NHFLQ+ DGDV V+DVR VP++YHARYKAQERTYFYRL+SG + LS  +KDR WHVPE L
Sbjct: 181 NHFLQRKDGDVMVIDVRCVPSNYHARYKAQERTYFYRLLSGSDPLSILEKDRCWHVPEEL 240

Query: 241 NIGAMQEACKVLVGHHDFSSFRAAGCQANSPMRTLDELDVCEVVSTPYFPSSMERK---- 300
           N+  MQEAC+VLVG HDFSSFRAAGCQA SPMR+LDEL++ EV STPYFPS  ER     
Sbjct: 241 NLRFMQEACRVLVGSHDFSSFRAAGCQAKSPMRSLDELNITEVPSTPYFPSITERTLSNL 300

Query: 301 --------QRQGKEECENEVLHSESYE-----VGFGIRRRHRCFVVTARARSFLYHQVRL 360
                     Q K E      +    E       FG RRRHRC+VVTAR+R FLYHQVRL
Sbjct: 301 NNGDPLACSNQPKSETAGVTTNVGEVEGSTEGDSFGRRRRHRCYVVTARSRGFLYHQVRL 360

Query: 361 MVGVLKAVGTGDLTVGDVERILEAKNVSSASPMAPACGLYLGHVKYDLP 386
           +VG LK VGTG+LTV DVERILEAK VS+A PMAPA GLYL  V+Y+ P
Sbjct: 361 IVGALKCVGTGELTVSDVERILEAKTVSAAKPMAPASGLYLARVRYEFP 372

[Close]

BLAST of Cp4.1LG01g16420 vs. TAIR 10
Match: AT1G34150.1 (Pseudouridine synthase family protein )

HSP 1 Score: 52.4 bits (124), Expect = 9.8e-07
Identity = 46/180 (25.56%), Postives = 70/180 (38.89%), Query Frame = 0


Query: 183 DVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQEAC 242
           D+ V+     P D+HAR+    R Y Y                 W   + LN+ AM  A 
Sbjct: 198 DIRVIGWSPAPIDFHARFSCYAREYKYFF---------------WR--QNLNLSAMDFAG 257

Query: 243 KVLVGHHDFSSFRAAGCQANSPMRTLDELDV-CEVVSTPYFPSSMERKQRQGKEECENEV 302
           K  +G HDF +F    C+       +D  +V C      +F  S  +   +G + C    
Sbjct: 258 KKFIGEHDFRNF----CK-------MDVANVHCYTRRVTFFEVSPCQNSHEGDQLC---- 317

Query: 303 LHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDVERILEAK 362
                                T R  +FL+HQ+R MV VL  +G G  +V  ++ +L+ K
Sbjct: 318 -------------------TFTMRGSAFLWHQIRCMVAVLFMIGQGVESVDVIDTLLDTK 326

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g16420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2WAT0	5.0e-40	34.30	tRNA pseudouridine synthase A OS=Magnetospirillum magneticum (strain AMB-1 / ATC...	[more]
B6IPI0	8.5e-40	35.12	tRNA pseudouridine synthase A OS=Rhodospirillum centenum (strain ATCC 51521 / SW...	[more]
A7IKI9	8.5e-40	34.43	tRNA pseudouridine synthase A OS=Xanthobacter autotrophicus (strain ATCC BAA-115...	[more]
A9ILJ7	5.5e-39	31.36	tRNA pseudouridine synthase A OS=Bartonella tribocorum (strain CIP 105476 / IBS ...	[more]
A7HPQ3	9.4e-39	32.84	tRNA pseudouridine synthase A OS=Parvibaculum lavamentivorans (strain DS-1 / DSM...	[more]

BLAST of Cp4.1LG01g16420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023524389.1	2.12e-254	90.59	uncharacterized protein LOC111788293 [Cucurbita pepo subsp. pepo]	[more]
XP_022998153.1	9.22e-249	89.06	uncharacterized protein LOC111492882 [Cucurbita maxima]	[more]
XP_022956590.1	3.75e-248	89.31	uncharacterized protein LOC111458281 [Cucurbita moschata]	[more]
KAG6601629.1	2.97e-247	89.31	hypothetical protein SDJN03_06862, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7032390.1	5.61e-243	87.72	truA, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Cp4.1LG01g16420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KFZ8	4.46e-249	89.06	tRNA pseudouridine synthase OS=Cucurbita maxima OX=3661 GN=LOC111492882 PE=3 SV=...	[more]
A0A6J1GY72	1.82e-248	89.31	tRNA pseudouridine synthase OS=Cucurbita moschata OX=3662 GN=LOC111458281 PE=3 S...	[more]
A0A5D3CZZ6	1.44e-221	81.19	tRNA pseudouridine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3BDG9	1.44e-221	81.19	tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103488841 PE=3 SV=1	[more]
A0A1S3BDY4	3.80e-219	80.93	tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103488841 PE=3 SV=1	[more]

BLAST of Cp4.1LG01g16420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09800.1	4.4e-124	59.17	Pseudouridine synthase family protein	[more]
AT1G34150.1	9.8e-07	25.56	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020094	Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal	GENE3D	3.30.70.580		coord: 45..128 e-value: 4.1E-11 score: 45.1 coord: 131..202 e-value: 1.1E-7 score: 34.1
IPR020095	Pseudouridine synthase I, TruA, C-terminal	GENE3D	3.30.70.660		coord: 204..384 e-value: 2.5E-39 score: 136.3
IPR020097	Pseudouridine synthase I, TruA, alpha/beta domain	PFAM	PF01416	PseudoU_synth_1	coord: 241..383 e-value: 7.6E-31 score: 106.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	PANTHER	PTHR11142:SF0	TRNA PSEUDOURIDINE SYNTHASE-LIKE 1	coord: 33..99 coord: 135..383
IPR001406	Pseudouridine synthase I, TruA	PANTHER	PTHR11142	PSEUDOURIDYLATE SYNTHASE	coord: 33..99 coord: 135..383
IPR001406	Pseudouridine synthase I, TruA	HAMAP	MF_00171	TruA	coord: 48..382 score: 27.145834
IPR001406	Pseudouridine synthase I, TruA	CDD	cd02570	PseudoU_synth_EcTruA	coord: 54..382 e-value: 9.26513E-99 score: 291.685
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 47..97
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 135..383

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g16420.1	Cp4.1LG01g16420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031119	tRNA pseudouridine synthesis
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0106029	tRNA pseudouridine synthase activity
molecular_function	GO:0009982	pseudouridine synthase activity