Cp4.1LG01g16270 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g16270
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Cp4.1LG01: 9892903 .. 9893985 (+)
RNA-Seq Expression	Cp4.1LG01g16270
Synteny	Cp4.1LG01g16270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAACGGAGCGTTAAGTGATTTGACCGGAAATGGCCTCCGCTTGTGCTTCTTCCGCCATCGCCGCGGTGGCGATTTCTTCTTCCAGGCAAGTTTTTTCTCTTCCTCCGCCGTTTTTTGCAGTTCTTTATGGAGCTTTGTTTTTTGCAGTTCCCAGAAGAATGGATGCCCCAAGGTTTCTAATTTCCTAACCGGCAAGAGGCTCAGGCTGAGAAAGTACACTGCTGCGGCTGTTGCTCCTCGATCAGCTCCGGTGTGCGCCGCCGCCGACCCCGACAGACCCCTCTGGTTCCCCGGCAGCACCCCTCCCCCATGGCTCGACGGCAGCCTCCCCGGGGACTTTGGGTTTGACCCACTTGGTCTCTGTAAGTATCCTTGAATGATGAAAATCCCACGTCAATTAATTTAGAGAACGATAGCAGGTTTATAATGAAAGAATACTCTAAACCTTTTAGGAAGCCCAAAATAGAATTATGGAAAGTCCTGTTCACTAGAAATTTTTAAGGTTGTCTAGATTTAAAATCGTAACTATGTTTGTTTGCGTGTATGAATATTGATAGCTTCTGATCCGGAGAGCCTGAGATGGAACCAGCAAGCAGAGCTGGTGCACTGCCGGTGGGCAATGTTGGGCGCCGCCGGGATTTTCATCCCGGAATTCTTGACAAAGATCGGAATTCTCAACACCCCGTCGTGGTACACTGCCGGAGAATTGGAATACTTCACCGATACCACCACTCTGTTCATTGTGGAACTCATTTTCATCGGTTGGGCCGAGGGTAGACGATGGGCCGACATTCTGAAACCCGGTTGCGTCAATACTGACCCAATCTTCCCCAACAACAAGCTAACCGGAACCGACGTCGGGTACCCAGGTGGCCTATGGTTCGACCCACTCGGTTGGGGTAGCGGGTCACCCGAAAAAATCAAGGAATTGAGAACGAAAGAGATCAAGAACGGGCGACTGGCTATGTTGGCGGTGATGGGCGCGTGGTTCCAACACATTTACACCGGCACCGGTCCCATTGACAACCTCTTCGCTCACCTTGCCGATCCCGGCCACGCCACTGTCTTCGCCGTGAGTTTT

mRNA sequence

CTAAACGGAGCGTTAAGTGATTTGACCGGAAATGGCCTCCGCTTTTCCCAGAAGAATGGATGCCCCAAGGTTTCTAATTTCCTAACCGGCAAGAGGCTCAGGCTGAGAAAGTACACTGCTGCGGCTGTTGCTCCTCGATCAGCTCCGGTGTGCGCCGCCGCCGACCCCGACAGACCCCTCTGCCTGAGATGGAACCAGCAAGCAGAGCTGGTGCACTGCCGGTGGGCAATGTTGGGCGCCGCCGGGATTTTCATCCCGGAATTCTTGACAAAGATCGGAATTCTCAACACCCCGTCGTGGTACACTGCCGGAGAATTGGAATACTTCACCGATACCACCACTCTGTTCATTGTGGAACTCATTTTCATCGGTTGGGCCGAGGGTAGACGATGGGCCGACATTCTGAAACCCGGTTGCGTCAATACTGACCCAATCTTCCCCAACAACAAGCTAACCGGAACCGACGTCGGGTACCCAGGTGGCCTATGGTTCGACCCACTCGGTTGGGGTAGCGGGTCACCCGAAAAAATCAAGGAATTGAGAACGAAAGAGATCAAGAACGGGCGACTGGCTATGTTGGCGGTGATGGGCGCGTGGTTCCAACACATTTACACCGGCACCGGTCCCATTGACAACCTCTTCGCTCACCTTGCCGATCCCGGCCACGCCACTGTCTTCGCCGTGAGTTTT

Coding sequence (CDS)

CTAAACGGAGCGTTAAGTGATTTGACCGGAAATGGCCTCCGCTTTTCCCAGAAGAATGGATGCCCCAAGGTTTCTAATTTCCTAACCGGCAAGAGGCTCAGGCTGAGAAAGTACACTGCTGCGGCTGTTGCTCCTCGATCAGCTCCGGTGTGCGCCGCCGCCGACCCCGACAGACCCCTCTGCCTGAGATGGAACCAGCAAGCAGAGCTGGTGCACTGCCGGTGGGCAATGTTGGGCGCCGCCGGGATTTTCATCCCGGAATTCTTGACAAAGATCGGAATTCTCAACACCCCGTCGTGGTACACTGCCGGAGAATTGGAATACTTCACCGATACCACCACTCTGTTCATTGTGGAACTCATTTTCATCGGTTGGGCCGAGGGTAGACGATGGGCCGACATTCTGAAACCCGGTTGCGTCAATACTGACCCAATCTTCCCCAACAACAAGCTAACCGGAACCGACGTCGGGTACCCAGGTGGCCTATGGTTCGACCCACTCGGTTGGGGTAGCGGGTCACCCGAAAAAATCAAGGAATTGAGAACGAAAGAGATCAAGAACGGGCGACTGGCTATGTTGGCGGTGATGGGCGCGTGGTTCCAACACATTTACACCGGCACCGGTCCCATTGACAACCTCTTCGCTCACCTTGCCGATCCCGGCCACGCCACTGTCTTCGCCGTGAGTTTT

Protein sequence

LNGALSDLTGNGLRFSQKNGCPKVSNFLTGKRLRLRKYTAAAVAPRSAPVCAAADPDRPLCLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAVSF

Homology

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BLAST of Cp4.1LG01g16270 vs. ExPASy Swiss-Prot
Match: P10708 (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB7 PE=3 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 7.1e-103
Identity = 178/234 (76.07%), Postives = 187/234 (79.91%), Query Frame = 0


Query: 25  SNFLTGKRLRLRKYTAAAVAPRSAPVCAAADPDRPL------------------------ 84
           ++FL G+RLR+ KY+    A  +  VC AADPDRPL                        
Sbjct: 32  ASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPL 91

Query: 85  -------CLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTT 144
                   LRWNQQAELVHCRWAMLGAAGIFIPE LTKIGILNTPSWYTAGE EYFTDTT
Sbjct: 92  GLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTT 151

Query: 145 TLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGS 204
           TLFIVEL+ IGWAEGRRWADI+KPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGS
Sbjct: 152 TLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGS 211

Query: 205 PEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFA 228
           P KIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT+FA
Sbjct: 212 PAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 265

[Close]

BLAST of Cp4.1LG01g16270 vs. ExPASy Swiss-Prot
Match: P13869 (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 1.2e-99
Identity = 181/247 (73.28%), Postives = 192/247 (77.73%), Query Frame = 0


Query: 16  SQKNGC---PKVSNFLTGKRLRLRKYTAAAVAPRSAPVCA-AADPDRPL----------- 75
           SQKNG       ++FL GKRLR+ K+  A V  RS  V A AADPDRPL           
Sbjct: 20  SQKNGSIVGATKASFLGGKRLRVSKF-IAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWL 79

Query: 76  --------------------CLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSW 135
                                L+WN QAELVH RWAMLGAAGIFIPEFLTKIG+LNTPSW
Sbjct: 80  DGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSW 139

Query: 136 YTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPG 195
           YTAGE EYFTDTTTLF++EL+ IGWAEGRRWADI+KPGCVNTDPIFPNNKLTGTDVGYPG
Sbjct: 140 YTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPG 199

Query: 196 GLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 228
           GLWFDPLGWGSGSP KIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP
Sbjct: 200 GLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 259

[Close]

BLAST of Cp4.1LG01g16270 vs. ExPASy Swiss-Prot
Match: Q9SYW8 (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 5.8e-97
Identity = 174/235 (74.04%), Postives = 186/235 (79.15%), Query Frame = 0


Query: 26  NFLTGKRLRL-RKYTAAAVAPRSAPVCA-AADPDRPL----------------------- 85
           +FL GK+LRL +K T  AV+   A V A AADPDRP+                       
Sbjct: 18  SFLGGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDP 77

Query: 86  --------CLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDT 145
                    L+WN QAE+VHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGE EYFTD 
Sbjct: 78  LGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDK 137

Query: 146 TTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSG 205
           TTLF+VELI IGWAEGRRWADI+KPG VNTDP+FPNNKLTGTDVGYPGGLWFDPLGWGSG
Sbjct: 138 TTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSG 197

Query: 206 SPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFA 228
           SP K+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT+FA
Sbjct: 198 SPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 252

[Close]

BLAST of Cp4.1LG01g16270 vs. ExPASy Swiss-Prot
Match: Q8LCQ4 (Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA6 PE=1 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.6e-59
Identity = 103/179 (57.54%), Postives = 127/179 (70.95%), Query Frame = 0


Query: 49  PVCAAADPDRPLCLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEY 108
           P+   +DPD    L+W  QAEL+H RWAML   GI IPE L ++G +   SWY AG  EY
Sbjct: 90  PLGLGSDPD---TLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREY 149

Query: 109 FTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 168
           F D+TTLF+ +++ +GWAEGRRWAD++KPG V+ +P +P+      DVGYPGGLWFD + 
Sbjct: 150 FADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMM 209

Query: 169 WGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFA 228
           WG GSPE +  LRTKEIKNGRLAMLA +G  FQ  YT   PI+NL AHLADPGH  VF+
Sbjct: 210 WGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFS 265

[Close]

BLAST of Cp4.1LG01g16270 vs. ExPASy Swiss-Prot
Match: Q9SQL2 (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.0e-45
Identity = 91/177 (51.41%), Postives = 112/177 (63.28%), Query Frame = 0


Query: 49  PVCAAADPDRPLCLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEY 108
           P+  A DP+    LRW  QAELV+ RWAMLG AG+ +PE  T IGI+N P WY AG+ EY
Sbjct: 78  PLGLAEDPEN---LRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY 137

Query: 109 FTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 168
           F  ++TLF++E I   + E RRW DI  PG VN DPIF    L   +VGYPGG+ F+PL 
Sbjct: 138 FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGI-FNPLN 197

Query: 169 WGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATV 226
           +         E + KEI NGRLAMLA +G   QH  TG GP DNL  H++DP H T+
Sbjct: 198 FA-----PTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTI 245

[Close]

BLAST of Cp4.1LG01g16270 vs. NCBI nr
Match: XP_022957420.1 (chlorophyll a-b binding protein 7, chloroplastic [Cucurbita moschata] >XP_022998486.1 chlorophyll a-b binding protein 7, chloroplastic [Cucurbita maxima] >XP_023515906.1 chlorophyll a-b binding protein 7, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 437 bits (1123), Expect = 1.61e-153
Identity = 211/243 (86.83%), Postives = 211/243 (86.83%), Query Frame = 0


Query: 16  SQKNGCPKVSNFLTGKRLRLRKYTAAAVAPRSAPVCAAADPDRPL--------------- 75
           SQKNGCPKVSNFLTGKRLRLRKYTAAAVAPRSAPVCAAADPDRPL               
Sbjct: 20  SQKNGCPKVSNFLTGKRLRLRKYTAAAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSL 79

Query: 76  ----------------CLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 135
                            LRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG
Sbjct: 80  PGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 139

Query: 136 ELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 195
           ELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF
Sbjct: 140 ELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 199

Query: 196 DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT 227
           DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT
Sbjct: 200 DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT 259

[Close]

BLAST of Cp4.1LG01g16270 vs. NCBI nr
Match: XP_023541134.1 (chlorophyll a-b binding protein 7, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 429 bits (1103), Expect = 1.79e-150
Identity = 205/243 (84.36%), Postives = 209/243 (86.01%), Query Frame = 0


Query: 16  SQKNGCPKVSNFLTGKRLRLRKYTAAAVAPRSAPVCAAADPDRPL--------------- 75
           SQKNGCPK SNF+TGK+LRLRKYT AAVAPRSAPVCAAADP+RPL               
Sbjct: 20  SQKNGCPKASNFVTGKKLRLRKYTTAAVAPRSAPVCAAADPNRPLWFPGSTPPPWLDGSL 79

Query: 76  ----------------CLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 135
                            LRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG
Sbjct: 80  PGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 139

Query: 136 ELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 195
           ELEYFTDTTTLF+VELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF
Sbjct: 140 ELEYFTDTTTLFVVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 199

Query: 196 DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT 227
           DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT
Sbjct: 200 DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT 259

[Close]

BLAST of Cp4.1LG01g16270 vs. NCBI nr
Match: XP_022966812.1 (chlorophyll a-b binding protein 7, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 427 bits (1099), Expect = 7.29e-150
Identity = 204/243 (83.95%), Postives = 208/243 (85.60%), Query Frame = 0


Query: 16  SQKNGCPKVSNFLTGKRLRLRKYTAAAVAPRSAPVCAAADPDRPL--------------- 75
           SQKNGCPK SNF+TGK+LRLRKYT  AVAPRSAPVCAAADP+RPL               
Sbjct: 20  SQKNGCPKASNFVTGKKLRLRKYTTVAVAPRSAPVCAAADPNRPLWFPGSTPPPWLDGSL 79

Query: 76  ----------------CLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 135
                            LRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG
Sbjct: 80  PGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 139

Query: 136 ELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 195
           ELEYFTDTTTLF+VELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF
Sbjct: 140 ELEYFTDTTTLFVVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 199

Query: 196 DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT 227
           DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT
Sbjct: 200 DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT 259

[Close]

BLAST of Cp4.1LG01g16270 vs. NCBI nr
Match: XP_022945038.1 (chlorophyll a-b binding protein 7, chloroplastic-like [Cucurbita moschata] >KAG6573588.1 Chlorophyll a-b binding protein 7, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 426 bits (1095), Expect = 2.97e-149
Identity = 203/243 (83.54%), Postives = 207/243 (85.19%), Query Frame = 0


Query: 16  SQKNGCPKVSNFLTGKRLRLRKYTAAAVAPRSAPVCAAADPDRPL--------------- 75
           SQKNGCPK SNF+TGK+LRLRKYT   VAPRSAPVCAAADP+RPL               
Sbjct: 20  SQKNGCPKASNFVTGKKLRLRKYTTGVVAPRSAPVCAAADPNRPLWFPGSTPPPWLDGSL 79

Query: 76  ----------------CLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 135
                            LRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG
Sbjct: 80  PGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 139

Query: 136 ELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 195
           ELEYFTDTTTLF+VELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF
Sbjct: 140 ELEYFTDTTTLFVVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 199

Query: 196 DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT 227
           DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT
Sbjct: 200 DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT 259

[Close]

BLAST of Cp4.1LG01g16270 vs. NCBI nr
Match: XP_022151778.1 (chlorophyll a-b binding protein 7, chloroplastic [Momordica charantia])

HSP 1 Score: 424 bits (1090), Expect = 1.71e-148
Identity = 203/243 (83.54%), Postives = 208/243 (85.60%), Query Frame = 0


Query: 16  SQKNGCPKVSNFLTGKRLRLRKYTAAAVAPRSAPVCAAADPDRPL--------------- 75
           SQKNGCPK  NF+TGK+LRLRKYTAAAVAPRSA VCAAADP+RPL               
Sbjct: 20  SQKNGCPKACNFVTGKKLRLRKYTAAAVAPRSATVCAAADPNRPLWFPGSTPPPWLDGSL 79

Query: 76  ----------------CLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 135
                            LRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWY+AG
Sbjct: 80  PGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYSAG 139

Query: 136 ELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 195
           ELEYFTDTTTLF+VELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF
Sbjct: 140 ELEYFTDTTTLFVVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 199

Query: 196 DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT 227
           DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT
Sbjct: 200 DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT 259

[Close]

BLAST of Cp4.1LG01g16270 vs. ExPASy TrEMBL
Match: A0A6J1KAB5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111493102 PE=3 SV=1)

HSP 1 Score: 437 bits (1123), Expect = 7.78e-154
Identity = 211/243 (86.83%), Postives = 211/243 (86.83%), Query Frame = 0


Query: 16  SQKNGCPKVSNFLTGKRLRLRKYTAAAVAPRSAPVCAAADPDRPL--------------- 75
           SQKNGCPKVSNFLTGKRLRLRKYTAAAVAPRSAPVCAAADPDRPL               
Sbjct: 20  SQKNGCPKVSNFLTGKRLRLRKYTAAAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSL 79

Query: 76  ----------------CLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 135
                            LRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG
Sbjct: 80  PGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 139

Query: 136 ELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 195
           ELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF
Sbjct: 140 ELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 199

Query: 196 DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT 227
           DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT
Sbjct: 200 DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT 259

[Close]

BLAST of Cp4.1LG01g16270 vs. ExPASy TrEMBL
Match: A0A6J1H0H5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111458830 PE=3 SV=1)

HSP 1 Score: 437 bits (1123), Expect = 7.78e-154
Identity = 211/243 (86.83%), Postives = 211/243 (86.83%), Query Frame = 0


Query: 16  SQKNGCPKVSNFLTGKRLRLRKYTAAAVAPRSAPVCAAADPDRPL--------------- 75
           SQKNGCPKVSNFLTGKRLRLRKYTAAAVAPRSAPVCAAADPDRPL               
Sbjct: 20  SQKNGCPKVSNFLTGKRLRLRKYTAAAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSL 79

Query: 76  ----------------CLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 135
                            LRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG
Sbjct: 80  PGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 139

Query: 136 ELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 195
           ELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF
Sbjct: 140 ELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 199

Query: 196 DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT 227
           DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT
Sbjct: 200 DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT 259

[Close]

BLAST of Cp4.1LG01g16270 vs. ExPASy TrEMBL
Match: A0A6J1HNZ1 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466406 PE=3 SV=1)

HSP 1 Score: 427 bits (1099), Expect = 3.53e-150
Identity = 204/243 (83.95%), Postives = 208/243 (85.60%), Query Frame = 0


Query: 16  SQKNGCPKVSNFLTGKRLRLRKYTAAAVAPRSAPVCAAADPDRPL--------------- 75
           SQKNGCPK SNF+TGK+LRLRKYT  AVAPRSAPVCAAADP+RPL               
Sbjct: 20  SQKNGCPKASNFVTGKKLRLRKYTTVAVAPRSAPVCAAADPNRPLWFPGSTPPPWLDGSL 79

Query: 76  ----------------CLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 135
                            LRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG
Sbjct: 80  PGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 139

Query: 136 ELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 195
           ELEYFTDTTTLF+VELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF
Sbjct: 140 ELEYFTDTTTLFVVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 199

Query: 196 DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT 227
           DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT
Sbjct: 200 DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT 259

[Close]

BLAST of Cp4.1LG01g16270 vs. ExPASy TrEMBL
Match: A0A6J1FZP5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111449400 PE=3 SV=1)

HSP 1 Score: 426 bits (1095), Expect = 1.44e-149
Identity = 203/243 (83.54%), Postives = 207/243 (85.19%), Query Frame = 0


Query: 16  SQKNGCPKVSNFLTGKRLRLRKYTAAAVAPRSAPVCAAADPDRPL--------------- 75
           SQKNGCPK SNF+TGK+LRLRKYT   VAPRSAPVCAAADP+RPL               
Sbjct: 20  SQKNGCPKASNFVTGKKLRLRKYTTGVVAPRSAPVCAAADPNRPLWFPGSTPPPWLDGSL 79

Query: 76  ----------------CLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 135
                            LRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG
Sbjct: 80  PGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 139

Query: 136 ELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 195
           ELEYFTDTTTLF+VELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF
Sbjct: 140 ELEYFTDTTTLFVVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 199

Query: 196 DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT 227
           DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT
Sbjct: 200 DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT 259

[Close]

BLAST of Cp4.1LG01g16270 vs. ExPASy TrEMBL
Match: A0A6J1DD44 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111019680 PE=3 SV=1)

HSP 1 Score: 424 bits (1090), Expect = 8.30e-149
Identity = 203/243 (83.54%), Postives = 208/243 (85.60%), Query Frame = 0


Query: 16  SQKNGCPKVSNFLTGKRLRLRKYTAAAVAPRSAPVCAAADPDRPL--------------- 75
           SQKNGCPK  NF+TGK+LRLRKYTAAAVAPRSA VCAAADP+RPL               
Sbjct: 20  SQKNGCPKACNFVTGKKLRLRKYTAAAVAPRSATVCAAADPNRPLWFPGSTPPPWLDGSL 79

Query: 76  ----------------CLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 135
                            LRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWY+AG
Sbjct: 80  PGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYSAG 139

Query: 136 ELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 195
           ELEYFTDTTTLF+VELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF
Sbjct: 140 ELEYFTDTTTLFVVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWF 199

Query: 196 DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT 227
           DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT
Sbjct: 200 DPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT 259

[Close]

BLAST of Cp4.1LG01g16270 vs. TAIR 10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2 )

HSP 1 Score: 355.1 bits (910), Expect = 4.1e-98
Identity = 174/235 (74.04%), Postives = 186/235 (79.15%), Query Frame = 0


Query: 26  NFLTGKRLRL-RKYTAAAVAPRSAPVCA-AADPDRPL----------------------- 85
           +FL GK+LRL +K T  AV+   A V A AADPDRP+                       
Sbjct: 18  SFLGGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDP 77

Query: 86  --------CLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDT 145
                    L+WN QAE+VHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGE EYFTD 
Sbjct: 78  LGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDK 137

Query: 146 TTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSG 205
           TTLF+VELI IGWAEGRRWADI+KPG VNTDP+FPNNKLTGTDVGYPGGLWFDPLGWGSG
Sbjct: 138 TTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSG 197

Query: 206 SPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFA 228
           SP K+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT+FA
Sbjct: 198 SPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 252

[Close]

BLAST of Cp4.1LG01g16270 vs. TAIR 10
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6 )

HSP 1 Score: 230.7 bits (587), Expect = 1.2e-60
Identity = 103/179 (57.54%), Postives = 127/179 (70.95%), Query Frame = 0


Query: 49  PVCAAADPDRPLCLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEY 108
           P+   +DPD    L+W  QAEL+H RWAML   GI IPE L ++G +   SWY AG  EY
Sbjct: 90  PLGLGSDPD---TLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREY 149

Query: 109 FTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 168
           F D+TTLF+ +++ +GWAEGRRWAD++KPG V+ +P +P+      DVGYPGGLWFD + 
Sbjct: 150 FADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMM 209

Query: 169 WGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFA 228
           WG GSPE +  LRTKEIKNGRLAMLA +G  FQ  YT   PI+NL AHLADPGH  VF+
Sbjct: 210 WGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFS 265

[Close]

BLAST of Cp4.1LG01g16270 vs. TAIR 10
Match: AT5G28450.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 204.1 bits (518), Expect = 1.2e-52
Identity = 90/98 (91.84%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 130 RWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGR 189
           R  DI+KPG VNTDP+FPNNKLTGTD+GYPGGLWFDPLGWGSGSP KIKELRTKEIKNGR
Sbjct: 71  RAPDIIKPGSVNTDPVFPNNKLTGTDIGYPGGLWFDPLGWGSGSPTKIKELRTKEIKNGR 130

Query: 190 LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFA 228
           LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHAT+FA
Sbjct: 131 LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 168

[Close]

BLAST of Cp4.1LG01g16270 vs. TAIR 10
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4 )

HSP 1 Score: 183.3 bits (464), Expect = 2.1e-46
Identity = 89/177 (50.28%), Postives = 114/177 (64.41%), Query Frame = 0


Query: 49  PVCAAADPDRPLCLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEY 108
           P+  A DP+    L+W  QAELV+ RWAMLG AG+ +PE  TKIGI+N P WY AG+ +Y
Sbjct: 79  PLGLAEDPEN---LKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQY 138

Query: 109 FTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 168
           F  ++TLF++E I   + E RRW DI  PG VN DPIF    L   +VGYPGG+ F+PL 
Sbjct: 139 FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGI-FNPLN 198

Query: 169 WGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATV 226
           +        +E + KE+ NGRLAMLA +G   QH  TG GP +NL  HL+DP H T+
Sbjct: 199 FA-----PTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTI 246

[Close]

BLAST of Cp4.1LG01g16270 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 146.7 bits (369), Expect = 2.2e-35
Identity = 76/176 (43.18%), Postives = 103/176 (58.52%), Query Frame = 0


Query: 59  PLCLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEY-FTDTTTLFI 118
           P  L+W  QAELVH R+AMLG AGI   + L   GI N P WY AG +++ F  T TL +
Sbjct: 78  PESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIV 137

Query: 119 VELIFIGWAEGRRWADILKPGCVNTDPIF---PNNKLTGTDVGYPGGLWFDPLGWGSGSP 178
           V+ + +G+AE +R+ D + PG    +  F       L G + GYPGG   +PLG      
Sbjct: 138 VQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAK-DV 197

Query: 179 EKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAVSF 231
           +   + + KEIKNGRLAM+A++G + Q   T TGPIDNL  HL++P H T+    F
Sbjct: 198 QNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTLF 252

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g16270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10708	7.1e-103	76.07	Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081...	[more]
P13869	1.2e-99	73.28	Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 S...	[more]
Q9SYW8	5.8e-97	74.04	Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis th...	[more]
Q8LCQ4	1.6e-59	57.54	Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis th...	[more]
Q9SQL2	1.0e-45	51.41	Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lh...	[more]

BLAST of Cp4.1LG01g16270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957420.1	1.61e-153	86.83	chlorophyll a-b binding protein 7, chloroplastic [Cucurbita moschata] >XP_022998...	[more]
XP_023541134.1	1.79e-150	84.36	chlorophyll a-b binding protein 7, chloroplastic-like [Cucurbita pepo subsp. pep...	[more]
XP_022966812.1	7.29e-150	83.95	chlorophyll a-b binding protein 7, chloroplastic-like [Cucurbita maxima]	[more]
XP_022945038.1	2.97e-149	83.54	chlorophyll a-b binding protein 7, chloroplastic-like [Cucurbita moschata] >KAG6...	[more]
XP_022151778.1	1.71e-148	83.54	chlorophyll a-b binding protein 7, chloroplastic [Momordica charantia]	[more]

BLAST of Cp4.1LG01g16270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KAB5	7.78e-154	86.83	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1H0H5	7.78e-154	86.83	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1HNZ1	3.53e-150	83.95	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1FZP5	1.44e-149	83.54	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1DD44	8.30e-149	83.54	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]

BLAST of Cp4.1LG01g16270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61470.1	4.1e-98	74.04	photosystem I light harvesting complex gene 2	[more]
AT1G19150.1	1.2e-60	57.54	photosystem I light harvesting complex gene 6	[more]
AT5G28450.1	1.2e-52	91.84	Chlorophyll A-B binding family protein	[more]
AT3G47470.1	2.1e-46	50.28	light-harvesting chlorophyll-protein complex I subunit A4	[more]
AT1G45474.1	2.2e-35	43.18	photosystem I light harvesting complex gene 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 61..202 e-value: 1.6E-40 score: 139.2
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 38..222 e-value: 8.9E-63 score: 213.6
None	No IPR available	PANTHER	PTHR21649:SF116	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 51..228
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 61..227
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 51..228

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g16270.1	Cp4.1LG01g16270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding