Cp4.1LG01g16220 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g16220
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Ribosomal protein L22p/L17e family protein isoform 1
Location	Cp4.1LG01: 9879808 .. 9880896 (-)
RNA-Seq Expression	Cp4.1LG01g16220
Synteny	Cp4.1LG01g16220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAAATAACGGGCGTTCTTGTATTCTCATTCTTCGAGTACATTTCTACGGAGGGCGAACTGCTGGCTGATATTTACTGAGGAAGAAATCTTAATTCCTGCAATCGATTTTCGAGGTAAGCTTTCGATTGATGTTGATTTCTTATCGTAGGTGTATTGAATTCGGAAAATTTCTTCAAAATCTTTTCAATTTTTGTTGTTGAATAAACTTAGGGCTTTCACCGGAGAATTTGTCGATCGGGTTTGTTTCTTAGGTAATCTCAGAAAGAAGATTTGGAGAGATCATGATTGTGTCTGATTCACCTATGTTCTTTGATTTTCTTGAGCGGAAACCATGATATTAAGTGAATTGCATGTTCAATTATTGTTTATTCGGCGTTTTTTCCCCGTTTGATTCGTTAGTATCTGTGGAATATACTAGAAATGAAGTTCATCATGGAGTTTGCTGAGAATTTGGTACTAAGACTTATGGAGGATCCAAAAGAGAGGGATCGGAAGTTCCGAGAGCACGTGTACGCGGTGAAGGATCGATGCCAAAAGACGAAGGAGATGTGGAGCTATCCAATCCGTCCTTACGGATTTTGGACATTTGAGCGCCACAATTGTCAGCTGCGGTGGGACGCACAAATCAGCCAGGTTCCTGGTAGGAGGGATCCTTACGATGATTTGCTTACGGACATCAACAATAACTCCAAGTGATAAGTAAGGTTCTGTTTCTGTGCATTTTTCGTATCCAATTTGATTGAATTAGAGAACTGATTGAAACTTGAAAACTTCTGGGCTTTTGGAGAGATATACCAATAGATAGATCCCTCTGATGTTGTTGTTCTTGAAATACTTTGCAGGATGTTTGGTAGAGCTCTGAAATCTGTGGTGGTATCTGGGAAGCTCCCAAGCAATTGTTTGAACGTTTATTTTGTTGTTGTTTAAACTGGAGAAGTACCTTGTGGGTTGTATTGTCAAACGGAGATTTTGCTGCTGGAATAAACGTGCTTTTTAGCTCATAAGATATATTTCAAGCTGGTGAATTTGAGCACATTGTTTTTCTAATGCCCTCATCGGATGCATTTTTCATTATTTATATCCATAT

mRNA sequence

TGGAAATAACGGGCGTTCTTGTATTCTCATTCTTCGAGTACATTTCTACGGAGGGCGAACTGCTGGCTGATATTTACTGAGGAAGAAATCTTAATTCCTGCAATCGATTTTCGAGATGAAGTTCATCATGGAGTTTGCTGAGAATTTGGTACTAAGACTTATGGAGGATCCAAAAGAGAGGGATCGGAAGTTCCGAGAGCACGTGTACGCGGTGAAGGATCGATGCCAAAAGACGAAGGAGATGTGGAGCTATCCAATCCGTCCTTACGGATTTTGGACATTTGAGCGCCACAATTGTCAGCTGCGGTGGGACGCACAAATCAGCCAGGTTCCTGGTAGGAGGGATCCTTACGATGATTTGCTTACGGACATCAACAATAACTCCAAGTGATAAGTAAGGATGTTTGGTAGAGCTCTGAAATCTGTGGTGGTATCTGGGAAGCTCCCAAGCAATTGTTTGAACGTTTATTTTGTTGTTGTTTAAACTGGAGAAGTACCTTGTGGGTTGTATTGTCAAACGGAGATTTTGCTGCTGGAATAAACGTGCTTTTTAGCTCATAAGATATATTTCAAGCTGGTGAATTTGAGCACATTGTTTTTCTAATGCCCTCATCGGATGCATTTTTCATTATTTATATCCATAT

Coding sequence (CDS)

ATGAAGTTCATCATGGAGTTTGCTGAGAATTTGGTACTAAGACTTATGGAGGATCCAAAAGAGAGGGATCGGAAGTTCCGAGAGCACGTGTACGCGGTGAAGGATCGATGCCAAAAGACGAAGGAGATGTGGAGCTATCCAATCCGTCCTTACGGATTTTGGACATTTGAGCGCCACAATTGTCAGCTGCGGTGGGACGCACAAATCAGCCAGGTTCCTGGTAGGAGGGATCCTTACGATGATTTGCTTACGGACATCAACAATAACTCCAAGTGA

Protein sequence

MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHNCQLRWDAQISQVPGRRDPYDDLLTDINNNSK

Homology

[Close]

BLAST of Cp4.1LG01g16220 vs. NCBI nr
Match: XP_022956462.1 (uncharacterized protein LOC111458190 [Cucurbita moschata] >XP_022956463.1 uncharacterized protein LOC111458190 [Cucurbita moschata] >XP_022956464.1 uncharacterized protein LOC111458190 [Cucurbita moschata] >XP_022998787.1 uncharacterized protein LOC111493347 [Cucurbita maxima] >XP_022998795.1 uncharacterized protein LOC111493347 [Cucurbita maxima] >XP_022998804.1 uncharacterized protein LOC111493347 [Cucurbita maxima] >XP_022998812.1 uncharacterized protein LOC111493347 [Cucurbita maxima] >XP_023526352.1 uncharacterized protein LOC111789870 [Cucurbita pepo subsp. pepo] >XP_023526360.1 uncharacterized protein LOC111789870 [Cucurbita pepo subsp. pepo] >XP_023526369.1 uncharacterized protein LOC111789870 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197 bits (500), Expect = 1.24e-63
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60
          MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN
Sbjct: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

Query: 61 CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91
          CQLRWDAQISQVPGRRDPYDDLLTDINNNSK
Sbjct: 61 CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91

[Close]

BLAST of Cp4.1LG01g16220 vs. NCBI nr
Match: XP_038891434.1 (uncharacterized protein LOC120080854 [Benincasa hispida] >XP_038891435.1 uncharacterized protein LOC120080854 [Benincasa hispida])

HSP 1 Score: 185 bits (469), Expect = 6.67e-59
Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60
          MKF+MEFAENLVLRLMEDPKERDRKFREH+YAVKDRCQKTKEMWSYP+RPYGFWTFERHN
Sbjct: 1  MKFVMEFAENLVLRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91
           QL+WDAQISQ PGRRDPYDD+L DINNNSK
Sbjct: 61 SQLKWDAQISQAPGRRDPYDDMLQDINNNSK 91

[Close]

BLAST of Cp4.1LG01g16220 vs. NCBI nr
Match: XP_022151828.1 (uncharacterized protein LOC111019716 [Momordica charantia])

HSP 1 Score: 183 bits (465), Expect = 2.72e-58
Identity = 82/91 (90.11%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60
          MKF+MEFAENLV+RLMEDPKERDRKFREH+YAVKDRCQKTKEMWSYP+RPYGFWTFERHN
Sbjct: 1  MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91
           QL+WDAQISQ PGRRDPYDD+L DINNNSK
Sbjct: 61 SQLQWDAQISQAPGRRDPYDDMLQDINNNSK 91

[Close]

BLAST of Cp4.1LG01g16220 vs. NCBI nr
Match: XP_008446038.1 (PREDICTED: uncharacterized protein LOC103488888 [Cucumis melo] >XP_008446039.1 PREDICTED: uncharacterized protein LOC103488888 [Cucumis melo] >KAA0034194.1 uncharacterized protein E6C27_scaffold65G001900 [Cucumis melo var. makuwa] >TYK15726.1 uncharacterized protein E5676_scaffold35G002250 [Cucumis melo var. makuwa])

HSP 1 Score: 178 bits (451), Expect = 3.72e-56
Identity = 81/91 (89.01%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60
          MKFIMEFAE+LVLRLMEDPKERDR+FREHVYAVKDRCQKTKEMWS P+RPYGFWTF+RHN
Sbjct: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFDRHN 60

Query: 61 CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91
           QL+WD QISQVPGRRDPYDDLL D NNNSK
Sbjct: 61 SQLKWDPQISQVPGRRDPYDDLLQDFNNNSK 91

[Close]

BLAST of Cp4.1LG01g16220 vs. NCBI nr
Match: XP_011655561.1 (uncharacterized protein LOC101213251 [Cucumis sativus])

HSP 1 Score: 177 bits (450), Expect = 5.29e-56
Identity = 78/91 (85.71%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60
          MKFIMEFAE+LVLRLMEDPKERDR+FREH+YA+KDRCQKTKEMWSYP+RPYGFWTF+RHN
Sbjct: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60

Query: 61 CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91
           QL+WD QISQVPGRRDPYDD+L D NN+SK
Sbjct: 61 SQLKWDPQISQVPGRRDPYDDMLQDFNNSSK 91

[Close]

BLAST of Cp4.1LG01g16220 vs. ExPASy TrEMBL
Match: A0A6J1K907 (uncharacterized protein LOC111493347 OS=Cucurbita maxima OX=3661 GN=LOC111493347 PE=4 SV=1)

HSP 1 Score: 197 bits (500), Expect = 5.99e-64
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60
          MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN
Sbjct: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

Query: 61 CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91
          CQLRWDAQISQVPGRRDPYDDLLTDINNNSK
Sbjct: 61 CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91

[Close]

BLAST of Cp4.1LG01g16220 vs. ExPASy TrEMBL
Match: A0A6J1GWE2 (uncharacterized protein LOC111458190 OS=Cucurbita moschata OX=3662 GN=LOC111458190 PE=4 SV=1)

HSP 1 Score: 197 bits (500), Expect = 5.99e-64
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60
          MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN
Sbjct: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

Query: 61 CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91
          CQLRWDAQISQVPGRRDPYDDLLTDINNNSK
Sbjct: 61 CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91

[Close]

BLAST of Cp4.1LG01g16220 vs. ExPASy TrEMBL
Match: A0A6J1DD92 (uncharacterized protein LOC111019716 OS=Momordica charantia OX=3673 GN=LOC111019716 PE=4 SV=1)

HSP 1 Score: 183 bits (465), Expect = 1.32e-58
Identity = 82/91 (90.11%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60
          MKF+MEFAENLV+RLMEDPKERDRKFREH+YAVKDRCQKTKEMWSYP+RPYGFWTFERHN
Sbjct: 1  MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91
           QL+WDAQISQ PGRRDPYDD+L DINNNSK
Sbjct: 61 SQLQWDAQISQAPGRRDPYDDMLQDINNNSK 91

[Close]

BLAST of Cp4.1LG01g16220 vs. ExPASy TrEMBL
Match: A0A1S3BE41 (uncharacterized protein LOC103488888 OS=Cucumis melo OX=3656 GN=LOC103488888 PE=4 SV=1)

HSP 1 Score: 178 bits (451), Expect = 1.80e-56
Identity = 81/91 (89.01%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60
          MKFIMEFAE+LVLRLMEDPKERDR+FREHVYAVKDRCQKTKEMWS P+RPYGFWTF+RHN
Sbjct: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFDRHN 60

Query: 61 CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91
           QL+WD QISQVPGRRDPYDDLL D NNNSK
Sbjct: 61 SQLKWDPQISQVPGRRDPYDDLLQDFNNNSK 91

[Close]

BLAST of Cp4.1LG01g16220 vs. ExPASy TrEMBL
Match: A0A5A7SSK1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002250 PE=4 SV=1)

HSP 1 Score: 178 bits (451), Expect = 1.80e-56
Identity = 81/91 (89.01%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60
          MKFIMEFAE+LVLRLMEDPKERDR+FREHVYAVKDRCQKTKEMWS P+RPYGFWTF+RHN
Sbjct: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFDRHN 60

Query: 61 CQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91
           QL+WD QISQVPGRRDPYDDLL D NNNSK
Sbjct: 61 SQLKWDPQISQVPGRRDPYDDLLQDFNNNSK 91

[Close]

BLAST of Cp4.1LG01g16220 vs. TAIR 10
Match: AT1G67350.1 (unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 151.8 bits (382), Expect = 2.7e-37
Identity = 68/85 (80.00%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60
          M FIMEFAENLVLRLME+P+ERDRK REH+Y + +RC+K KEMW+ PIRPYGFWTFERHN
Sbjct: 1  MGFIMEFAENLVLRLMENPEERDRKAREHIYEMHERCKKIKEMWALPIRPYGFWTFERHN 60

Query: 61 CQLRWDAQISQVPGRRDPYDDLLTD 86
           QLRWD QISQV GRRDPYDDLL D
Sbjct: 61 AQLRWDPQISQVAGRRDPYDDLLED 85

[Close]

BLAST of Cp4.1LG01g16220 vs. TAIR 10
Match: AT1G67350.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 151.8 bits (382), Expect = 2.7e-37
Identity = 68/85 (80.00%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60
          M FIMEFAENLVLRLME+P+ERDRK REH+Y + +RC+K KEMW+ PIRPYGFWTFERHN
Sbjct: 1  MGFIMEFAENLVLRLMENPEERDRKAREHIYEMHERCKKIKEMWALPIRPYGFWTFERHN 60

Query: 61 CQLRWDAQISQVPGRRDPYDDLLTD 86
           QLRWD QISQV GRRDPYDDLL D
Sbjct: 61 AQLRWDPQISQVAGRRDPYDDLLED 85

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g16220 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g16220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022956462.1	1.24e-63	100.00	uncharacterized protein LOC111458190 [Cucurbita moschata] >XP_022956463.1 unchar...	[more]
XP_038891434.1	6.67e-59	91.21	uncharacterized protein LOC120080854 [Benincasa hispida] >XP_038891435.1 unchara...	[more]
XP_022151828.1	2.72e-58	90.11	uncharacterized protein LOC111019716 [Momordica charantia]	[more]
XP_008446038.1	3.72e-56	89.01	PREDICTED: uncharacterized protein LOC103488888 [Cucumis melo] >XP_008446039.1 P...	[more]
XP_011655561.1	5.29e-56	85.71	uncharacterized protein LOC101213251 [Cucumis sativus]	[more]

BLAST of Cp4.1LG01g16220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K907	5.99e-64	100.00	uncharacterized protein LOC111493347 OS=Cucurbita maxima OX=3661 GN=LOC111493347...	[more]
A0A6J1GWE2	5.99e-64	100.00	uncharacterized protein LOC111458190 OS=Cucurbita moschata OX=3662 GN=LOC1114581...	[more]
A0A6J1DD92	1.32e-58	90.11	uncharacterized protein LOC111019716 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A1S3BE41	1.80e-56	89.01	uncharacterized protein LOC103488888 OS=Cucumis melo OX=3656 GN=LOC103488888 PE=...	[more]
A0A5A7SSK1	1.80e-56	89.01	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Cp4.1LG01g16220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67350.1	2.7e-37	80.00	unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacter...	[more]
AT1G67350.2	2.7e-37	80.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photores...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035204	NADH-ubiquinone oxidoreductase 11kDa subunit	PFAM	PF17250	NDUFB11	coord: 1..85 e-value: 1.4E-52 score: 176.3
IPR035204	NADH-ubiquinone oxidoreductase 11kDa subunit	PANTHER	PTHR37709	EXPRESSED PROTEIN	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g16220.1	Cp4.1LG01g16220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0005840	ribosome