Cp4.1LG01g16050 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g16050
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	TLC domain-containing protein At5g14285-like
Location	Cp4.1LG01: 9780244 .. 9780990 (-)
RNA-Seq Expression	Cp4.1LG01g16050
Synteny	Cp4.1LG01g16050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTTCAAATGCCCGAGAACTCATCACCATTGGCCTTGTTGTTGTTCTTCTTCATGTTTCTATTTGTATATGTATTCGCTTACTTGGTTGTGCTCCAGAACTGGGGGCCCAAGCACAGGATAGAGGCCTCAAGCTGCTTCATATCACTCGCCCATGGCAGTCCCGTCGTCATCATGGCCATCATTGCAATTCTCCAAGCTCCAAACATGGCTGATTTCGCCGCTCTCAATACCAAATACCAGGGCCTTGTCCTCGAGTACAGCATGGCTTATTTCTTGATGGATCTTCTTCACTACATACTGTTTTATCCACGAGATTTCGTCTTTATATGTCATCATCTGGCAGTGCTTTACGTGTTCGCTACATGCCATTACTTGGTTCGTCGTGGTGCTCTGCCCATTCTGGTGCTTTTGGTGCTCGCGGAGTTCAGCAGTGGGTGCCAGAATGTTTGGACCCTAGCGGGTTACAGAAGGGCTGATGTGCCGGCCGCCGCTAAGTTTCAGGACTTCGTGTCTCCATATTTCTTCACCTTTTACAGCATTCTCAGAGGGGGCTTCGCGCCTGTCTTTCTGCATAAGATGGGAGAATTTTATGTCAGCAGTGCAGCAGAAAATTTGATTCCTAAGTGGGCTTGGATTTCATGGATGGGTGTAATTGGAACTGCCATTTTAGTTAGCATATTGTGGGTCGGAAATCATTGGGTTCTCTGGTTTCGACGTACAAAGCATGGGAAAGCAGTGTGA

mRNA sequence

ATGGAGTTTCAAATGCCCGAGAACTCATCACCATTGGCCTTGTTGTTGTTCTTCTTCATGTTTCTATTTGTATATGTATTCGCTTACTTGGTTGTGCTCCAGAACTGGGGGCCCAAGCACAGGATAGAGGCCTCAAGCTGCTTCATATCACTCGCCCATGGCAGTCCCGTCGTCATCATGGCCATCATTGCAATTCTCCAAGCTCCAAACATGGCTGATTTCGCCGCTCTCAATACCAAATACCAGGGCCTTGTCCTCGAGTACAGCATGGCTTATTTCTTGATGGATCTTCTTCACTACATACTGTTTTATCCACGAGATTTCGTCTTTATATGTCATCATCTGGCAGTGCTTTACGTGTTCGCTACATGCCATTACTTGGTTCGTCGTGGTGCTCTGCCCATTCTGGTGCTTTTGGTGCTCGCGGAGTTCAGCAGTGGGTGCCAGAATGTTTGGACCCTAGCGGGTTACAGAAGGGCTGATGTGCCGGCCGCCGCTAAGTTTCAGGACTTCGTGTCTCCATATTTCTTCACCTTTTACAGCATTCTCAGAGGGGGCTTCGCGCCTGTCTTTCTGCATAAGATGGGAGAATTTTATGTCAGCAGTGCAGCAGAAAATTTGATTCCTAAGTGGGCTTGGATTTCATGGATGGGTGTAATTGGAACTGCCATTTTAGTTAGCATATTGTGGGTCGGAAATCATTGGGTTCTCTGGTTTCGACGTACAAAGCATGGGAAAGCAGTGTGA

Coding sequence (CDS)

ATGGAGTTTCAAATGCCCGAGAACTCATCACCATTGGCCTTGTTGTTGTTCTTCTTCATGTTTCTATTTGTATATGTATTCGCTTACTTGGTTGTGCTCCAGAACTGGGGGCCCAAGCACAGGATAGAGGCCTCAAGCTGCTTCATATCACTCGCCCATGGCAGTCCCGTCGTCATCATGGCCATCATTGCAATTCTCCAAGCTCCAAACATGGCTGATTTCGCCGCTCTCAATACCAAATACCAGGGCCTTGTCCTCGAGTACAGCATGGCTTATTTCTTGATGGATCTTCTTCACTACATACTGTTTTATCCACGAGATTTCGTCTTTATATGTCATCATCTGGCAGTGCTTTACGTGTTCGCTACATGCCATTACTTGGTTCGTCGTGGTGCTCTGCCCATTCTGGTGCTTTTGGTGCTCGCGGAGTTCAGCAGTGGGTGCCAGAATGTTTGGACCCTAGCGGGTTACAGAAGGGCTGATGTGCCGGCCGCCGCTAAGTTTCAGGACTTCGTGTCTCCATATTTCTTCACCTTTTACAGCATTCTCAGAGGGGGCTTCGCGCCTGTCTTTCTGCATAAGATGGGAGAATTTTATGTCAGCAGTGCAGCAGAAAATTTGATTCCTAAGTGGGCTTGGATTTCATGGATGGGTGTAATTGGAACTGCCATTTTAGTTAGCATATTGTGGGTCGGAAATCATTGGGTTCTCTGGTTTCGACGTACAAAGCATGGGAAAGCAGTGTGA

Protein sequence

MEFQMPENSSPLALLLFFFMFLFVYVFAYLVVLQNWGPKHRIEASSCFISLAHGSPVVIMAIIAILQAPNMADFAALNTKYQGLVLEYSMAYFLMDLLHYILFYPRDFVFICHHLAVLYVFATCHYLVRRGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTFYSILRGGFAPVFLHKMGEFYVSSAAENLIPKWAWISWMGVIGTAILVSILWVGNHWVLWFRRTKHGKAV

Homology

[Close]

BLAST of Cp4.1LG01g16050 vs. ExPASy Swiss-Prot
Match: Q8GYK7 (TLC domain-containing protein At5g14285 OS=Arabidopsis thaliana OX=3702 GN=At5g14285 PE=2 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 9.8e-58
Identity = 124/248 (50.00%), Postives = 157/248 (63.31%), Query Frame = 0


Query: 1   MEFQMPENSSPLALLLFFFMFLFVYVFAYLVVLQNWGPKHRIEASSCFISLAHGSPVVIM 60
           M   + E S P  L +FF MFL +Y+ AY +V +NW P+ R EASSC IS+ HGSP V +
Sbjct: 1   MSINIGEISIP-DLPIFFSMFLTIYLIAYFIVFRNWKPQIRPEASSCLISIFHGSPAVFL 60

Query: 61  AIIAILQAPNMADFAALNTKYQGLVLEYSMAYFLMDLLHYILFYPRDFVFICHHLAVLYV 120
           A  A+  +   + FA+ NT  Q  VL++S+AYFL DL HYI+F P D +FI HH+A L+V
Sbjct: 61  ATRAVFSSSERS-FASANTAAQNTVLDFSVAYFLTDLFHYIVFNPNDVLFIGHHVATLFV 120

Query: 121 FATCHYLVRRGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPA--AAKFQDFVSPYFFT 180
           F TC +LV  GA  IL LL+LAE +S CQN WTLAG R+ D  +  A K  D +SP F+ 
Sbjct: 121 FLTCRFLVFHGACAILGLLILAEVTSACQNAWTLAGARKNDPESRLAVKVYDLLSPPFYA 180

Query: 181 FYSILRGGFAPVFLHKMGEFYVSSAAENLIPKWAWISWMGVIGTAILVSILWVGNHWVLW 240
           FYSI+RG   P+F  KM  FY    A  +IP W WISW  V+G AI VSILW+ N W+  
Sbjct: 181 FYSIVRGVLGPLFFGKMVAFYARGGAHGVIPNWLWISWAIVVGIAITVSILWIWNLWIEL 240

Query: 241 FRRTKHGK 247
           F   K  K
Sbjct: 241 FSERKANK 246

[Close]

BLAST of Cp4.1LG01g16050 vs. NCBI nr
Match: XP_023554709.1 (TLC domain-containing protein At5g14285-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 498 bits (1282), Expect = 9.69e-178
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0


Query: 1   MEFQMPENSSPLALLLFFFMFLFVYVFAYLVVLQNWGPKHRIEASSCFISLAHGSPVVIM 60
           MEFQMPENSSPLALLLFFFMFLFVYVFAYLVVLQNWGPKHRIEASSCFISLAHGSPVVIM
Sbjct: 1   MEFQMPENSSPLALLLFFFMFLFVYVFAYLVVLQNWGPKHRIEASSCFISLAHGSPVVIM 60

Query: 61  AIIAILQAPNMADFAALNTKYQGLVLEYSMAYFLMDLLHYILFYPRDFVFICHHLAVLYV 120
           AIIAILQAPNMADFAALNTKYQGLVLEYSMAYFLMDLLHYILFYPRDFVFICHHLAVLYV
Sbjct: 61  AIIAILQAPNMADFAALNTKYQGLVLEYSMAYFLMDLLHYILFYPRDFVFICHHLAVLYV 120

Query: 121 FATCHYLVRRGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTFY 180
           FATCHYLVRRGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTFY
Sbjct: 121 FATCHYLVRRGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTFY 180

Query: 181 SILRGGFAPVFLHKMGEFYVSSAAENLIPKWAWISWMGVIGTAILVSILWVGNHWVLWFR 240
           SILRGGFAPVFLHKMGEFYVSSAAENLIPKWAWISWMGVIGTAILVSILWVGNHWVLWFR
Sbjct: 181 SILRGGFAPVFLHKMGEFYVSSAAENLIPKWAWISWMGVIGTAILVSILWVGNHWVLWFR 240

Query: 241 RTKHGKAV 248
           RTKHGKAV
Sbjct: 241 RTKHGKAV 248

[Close]

BLAST of Cp4.1LG01g16050 vs. NCBI nr
Match: XP_022956623.1 (TLC domain-containing protein At5g14285-like [Cucurbita moschata])

HSP 1 Score: 477 bits (1227), Expect = 2.44e-169
Identity = 239/249 (95.98%), Postives = 242/249 (97.19%), Query Frame = 0


Query: 1   MEFQMPENSSPLALLLFFF-MFLFVYVFAYLVVLQNWGPKHRIEASSCFISLAHGSPVVI 60
           MEFQMPE+ S LALL FFF MFLFVYVFAYLVVLQNWGPKHR+EASSCFISLAHG PVVI
Sbjct: 1   MEFQMPESPSSLALLFFFFFMFLFVYVFAYLVVLQNWGPKHRLEASSCFISLAHGCPVVI 60

Query: 61  MAIIAILQAPNMADFAALNTKYQGLVLEYSMAYFLMDLLHYILFYPRDFVFICHHLAVLY 120
           MAIIAILQAPNMADFAALNTKYQGLVLEYSMAYFLMDLLH+ILFYPRDFVFICHHLAVLY
Sbjct: 61  MAIIAILQAPNMADFAALNTKYQGLVLEYSMAYFLMDLLHFILFYPRDFVFICHHLAVLY 120

Query: 121 VFATCHYLVRRGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTF 180
           VFATCHYLV RGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTF
Sbjct: 121 VFATCHYLVSRGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTF 180

Query: 181 YSILRGGFAPVFLHKMGEFYVSSAAENLIPKWAWISWMGVIGTAILVSILWVGNHWVLWF 240
           YSILRGGFAPVFLHKMGEFYVSSAAENLIPKWAWISWMGVIGTAI VSILWVGNHWVLWF
Sbjct: 181 YSILRGGFAPVFLHKMGEFYVSSAAENLIPKWAWISWMGVIGTAIFVSILWVGNHWVLWF 240

Query: 241 RRTKHGKAV 248
           RRTKHGKAV
Sbjct: 241 RRTKHGKAV 249

[Close]

BLAST of Cp4.1LG01g16050 vs. NCBI nr
Match: KAG6601580.1 (TLC domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032345.1 TLC domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 476 bits (1226), Expect = 3.00e-169
Identity = 239/245 (97.55%), Postives = 242/245 (98.78%), Query Frame = 0


Query: 5   MPENSSPLALLLFFF-MFLFVYVFAYLVVLQNWGPKHRIEASSCFISLAHGSPVVIMAII 64
           MPE+ S LALLLFFF MFLFVYVFAYLVVLQNWGPKHR+EASSCFISLAHGSPVVIMAII
Sbjct: 1   MPESPSSLALLLFFFFMFLFVYVFAYLVVLQNWGPKHRLEASSCFISLAHGSPVVIMAII 60

Query: 65  AILQAPNMADFAALNTKYQGLVLEYSMAYFLMDLLHYILFYPRDFVFICHHLAVLYVFAT 124
           AILQAPN+ADFAALNTKYQGLVLEYSMAYFLMDLLHYILFYPRDFVFICHHLAVLYVFAT
Sbjct: 61  AILQAPNVADFAALNTKYQGLVLEYSMAYFLMDLLHYILFYPRDFVFICHHLAVLYVFAT 120

Query: 125 CHYLVRRGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTFYSIL 184
           CHYLVRRGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTFYSIL
Sbjct: 121 CHYLVRRGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTFYSIL 180

Query: 185 RGGFAPVFLHKMGEFYVSSAAENLIPKWAWISWMGVIGTAILVSILWVGNHWVLWFRRTK 244
           RGGFAPVFLHKMGEFYVSSAAENLIPKWAWISWMGVIGTAILVSILWVGNHWVLWFRRTK
Sbjct: 181 RGGFAPVFLHKMGEFYVSSAAENLIPKWAWISWMGVIGTAILVSILWVGNHWVLWFRRTK 240

Query: 245 HGKAV 248
           HGKAV
Sbjct: 241 HGKAV 245

[Close]

BLAST of Cp4.1LG01g16050 vs. NCBI nr
Match: XP_022998555.1 (TLC domain-containing protein At5g14285-like [Cucurbita maxima])

HSP 1 Score: 470 bits (1209), Expect = 1.35e-166
Identity = 236/249 (94.78%), Postives = 241/249 (96.79%), Query Frame = 0


Query: 1   MEFQMPENSSPLALLLFFF-MFLFVYVFAYLVVLQNWGPKHRIEASSCFISLAHGSPVVI 60
           MEFQMPE+ S LAL  FFF MFLFVYVFAYLVVLQNWGPKHR+EASSCFISLAHGSPVVI
Sbjct: 1   MEFQMPESPSSLALFFFFFFMFLFVYVFAYLVVLQNWGPKHRLEASSCFISLAHGSPVVI 60

Query: 61  MAIIAILQAPNMADFAALNTKYQGLVLEYSMAYFLMDLLHYILFYPRDFVFICHHLAVLY 120
           MAIIAILQAPNMADFAALNTKYQGLVL+YSMAYFLMDLLH+ILFYPRDFVFICHHLAVLY
Sbjct: 61  MAIIAILQAPNMADFAALNTKYQGLVLQYSMAYFLMDLLHFILFYPRDFVFICHHLAVLY 120

Query: 121 VFATCHYLVRRGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTF 180
           VFATC+YLVRRGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTF
Sbjct: 121 VFATCNYLVRRGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTF 180

Query: 181 YSILRGGFAPVFLHKMGEFYVSSAAENLIPKWAWISWMGVIGTAILVSILWVGNHWVLWF 240
           YSILRGGFAPVFLHKMGEFYVS AAENLIPKWAWISWMGVIGTAILVSILWVGNHWVLWF
Sbjct: 181 YSILRGGFAPVFLHKMGEFYVSRAAENLIPKWAWISWMGVIGTAILVSILWVGNHWVLWF 240

Query: 241 RRTKHGKAV 248
           R  KHGKAV
Sbjct: 241 RCKKHGKAV 249

[Close]

BLAST of Cp4.1LG01g16050 vs. NCBI nr
Match: XP_022151969.1 (TLC domain-containing protein At5g14285-like [Momordica charantia])

HSP 1 Score: 386 bits (992), Expect = 1.46e-133
Identity = 186/248 (75.00%), Postives = 212/248 (85.48%), Query Frame = 0


Query: 1   MEFQMPENSSPLALLLFFFMFLFVYVFAYLVVLQNWGPKHRIEASSCFISLAHGSPVVIM 60
           ME Q+ E   PL L +FF MFLF+Y+F YLVV ++WGPKHR+EA+S F+SLAHG+P   M
Sbjct: 1   MEAQILEIPFPL-LAVFFLMFLFMYLFGYLVVFRSWGPKHRLEAASSFMSLAHGTPAAAM 60

Query: 61  AIIAILQAPNMADFAALNTKYQGLVLEYSMAYFLMDLLHYILFYPRDFVFICHHLAVLYV 120
           AI+A+L APN  DFAALNT +QGLVLEYS+AYFL+DLLHY+LFYPRD VFICHHLAV+YV
Sbjct: 61  AILAVLHAPNAGDFAALNTNFQGLVLEYSIAYFLVDLLHYVLFYPRDLVFICHHLAVIYV 120

Query: 121 FATCHYLVRRGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTFY 180
           F TCHYLV  GA+PILVLLVLAE +SGC N W LAGYRRAD PAAAKFQD +SPYF+T+Y
Sbjct: 121 FVTCHYLVHHGAVPILVLLVLAELTSGCHNAWGLAGYRRADAPAAAKFQDALSPYFYTYY 180

Query: 181 SILRGGFAPVFLHKMGEFYVSSAAENLIPKWAWISWMGVIGTAILVSILWVGNHWVLWFR 240
           S LRGG APVFLHKMG FYVS AAEN+IPKWAWISWMGVI TAILVSILW+GNHW LWFR
Sbjct: 181 STLRGGLAPVFLHKMGIFYVSGAAENVIPKWAWISWMGVIATAILVSILWIGNHWALWFR 240

Query: 241 RTKHGKAV 248
           + +HGK V
Sbjct: 241 QRRHGKVV 247

[Close]

BLAST of Cp4.1LG01g16050 vs. ExPASy TrEMBL
Match: A0A6J1GXG9 (TLC domain-containing protein At5g14285-like OS=Cucurbita moschata OX=3662 GN=LOC111458300 PE=4 SV=1)

HSP 1 Score: 477 bits (1227), Expect = 1.18e-169
Identity = 239/249 (95.98%), Postives = 242/249 (97.19%), Query Frame = 0


Query: 1   MEFQMPENSSPLALLLFFF-MFLFVYVFAYLVVLQNWGPKHRIEASSCFISLAHGSPVVI 60
           MEFQMPE+ S LALL FFF MFLFVYVFAYLVVLQNWGPKHR+EASSCFISLAHG PVVI
Sbjct: 1   MEFQMPESPSSLALLFFFFFMFLFVYVFAYLVVLQNWGPKHRLEASSCFISLAHGCPVVI 60

Query: 61  MAIIAILQAPNMADFAALNTKYQGLVLEYSMAYFLMDLLHYILFYPRDFVFICHHLAVLY 120
           MAIIAILQAPNMADFAALNTKYQGLVLEYSMAYFLMDLLH+ILFYPRDFVFICHHLAVLY
Sbjct: 61  MAIIAILQAPNMADFAALNTKYQGLVLEYSMAYFLMDLLHFILFYPRDFVFICHHLAVLY 120

Query: 121 VFATCHYLVRRGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTF 180
           VFATCHYLV RGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTF
Sbjct: 121 VFATCHYLVSRGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTF 180

Query: 181 YSILRGGFAPVFLHKMGEFYVSSAAENLIPKWAWISWMGVIGTAILVSILWVGNHWVLWF 240
           YSILRGGFAPVFLHKMGEFYVSSAAENLIPKWAWISWMGVIGTAI VSILWVGNHWVLWF
Sbjct: 181 YSILRGGFAPVFLHKMGEFYVSSAAENLIPKWAWISWMGVIGTAIFVSILWVGNHWVLWF 240

Query: 241 RRTKHGKAV 248
           RRTKHGKAV
Sbjct: 241 RRTKHGKAV 249

[Close]

BLAST of Cp4.1LG01g16050 vs. ExPASy TrEMBL
Match: A0A6J1KCU9 (TLC domain-containing protein At5g14285-like OS=Cucurbita maxima OX=3661 GN=LOC111493150 PE=4 SV=1)

HSP 1 Score: 470 bits (1209), Expect = 6.56e-167
Identity = 236/249 (94.78%), Postives = 241/249 (96.79%), Query Frame = 0


Query: 1   MEFQMPENSSPLALLLFFF-MFLFVYVFAYLVVLQNWGPKHRIEASSCFISLAHGSPVVI 60
           MEFQMPE+ S LAL  FFF MFLFVYVFAYLVVLQNWGPKHR+EASSCFISLAHGSPVVI
Sbjct: 1   MEFQMPESPSSLALFFFFFFMFLFVYVFAYLVVLQNWGPKHRLEASSCFISLAHGSPVVI 60

Query: 61  MAIIAILQAPNMADFAALNTKYQGLVLEYSMAYFLMDLLHYILFYPRDFVFICHHLAVLY 120
           MAIIAILQAPNMADFAALNTKYQGLVL+YSMAYFLMDLLH+ILFYPRDFVFICHHLAVLY
Sbjct: 61  MAIIAILQAPNMADFAALNTKYQGLVLQYSMAYFLMDLLHFILFYPRDFVFICHHLAVLY 120

Query: 121 VFATCHYLVRRGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTF 180
           VFATC+YLVRRGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTF
Sbjct: 121 VFATCNYLVRRGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTF 180

Query: 181 YSILRGGFAPVFLHKMGEFYVSSAAENLIPKWAWISWMGVIGTAILVSILWVGNHWVLWF 240
           YSILRGGFAPVFLHKMGEFYVS AAENLIPKWAWISWMGVIGTAILVSILWVGNHWVLWF
Sbjct: 181 YSILRGGFAPVFLHKMGEFYVSRAAENLIPKWAWISWMGVIGTAILVSILWVGNHWVLWF 240

Query: 241 RRTKHGKAV 248
           R  KHGKAV
Sbjct: 241 RCKKHGKAV 249

[Close]

BLAST of Cp4.1LG01g16050 vs. ExPASy TrEMBL
Match: A0A6J1DEM0 (TLC domain-containing protein At5g14285-like OS=Momordica charantia OX=3673 GN=LOC111019804 PE=4 SV=1)

HSP 1 Score: 386 bits (992), Expect = 7.07e-134
Identity = 186/248 (75.00%), Postives = 212/248 (85.48%), Query Frame = 0


Query: 1   MEFQMPENSSPLALLLFFFMFLFVYVFAYLVVLQNWGPKHRIEASSCFISLAHGSPVVIM 60
           ME Q+ E   PL L +FF MFLF+Y+F YLVV ++WGPKHR+EA+S F+SLAHG+P   M
Sbjct: 1   MEAQILEIPFPL-LAVFFLMFLFMYLFGYLVVFRSWGPKHRLEAASSFMSLAHGTPAAAM 60

Query: 61  AIIAILQAPNMADFAALNTKYQGLVLEYSMAYFLMDLLHYILFYPRDFVFICHHLAVLYV 120
           AI+A+L APN  DFAALNT +QGLVLEYS+AYFL+DLLHY+LFYPRD VFICHHLAV+YV
Sbjct: 61  AILAVLHAPNAGDFAALNTNFQGLVLEYSIAYFLVDLLHYVLFYPRDLVFICHHLAVIYV 120

Query: 121 FATCHYLVRRGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTFY 180
           F TCHYLV  GA+PILVLLVLAE +SGC N W LAGYRRAD PAAAKFQD +SPYF+T+Y
Sbjct: 121 FVTCHYLVHHGAVPILVLLVLAELTSGCHNAWGLAGYRRADAPAAAKFQDALSPYFYTYY 180

Query: 181 SILRGGFAPVFLHKMGEFYVSSAAENLIPKWAWISWMGVIGTAILVSILWVGNHWVLWFR 240
           S LRGG APVFLHKMG FYVS AAEN+IPKWAWISWMGVI TAILVSILW+GNHW LWFR
Sbjct: 181 STLRGGLAPVFLHKMGIFYVSGAAENVIPKWAWISWMGVIATAILVSILWIGNHWALWFR 240

Query: 241 RTKHGKAV 248
           + +HGK V
Sbjct: 241 QRRHGKVV 247

[Close]

BLAST of Cp4.1LG01g16050 vs. ExPASy TrEMBL
Match: A0A0A0KVB7 (TLC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G590130 PE=4 SV=1)

HSP 1 Score: 335 bits (859), Expect = 9.73e-114
Identity = 170/238 (71.43%), Postives = 196/238 (82.35%), Query Frame = 0


Query: 12  LALLLFFFMFLFVYVFAYLVVLQNWGPKHRIEASSCFISLAHGSPVVIMAIIAILQAPNM 71
           L L LFF MFLFVY FAY V+L+NWGPKHR+EASSCFISLAHG+PVVI+A IAILQ+PN 
Sbjct: 3   LQLPLFFAMFLFVYTFAYSVLLRNWGPKHRLEASSCFISLAHGTPVVILAAIAILQSPNS 62

Query: 72  ADFAALNTKYQGLVLEYSMAYFLMDLLHYILFYPRDFVFICHHLAVLYVFATCHYLVRRG 131
            DFAA NTK+Q LVLEYS+AYF +DLLH +LF P DFVFI HHLAVLYVF TC+Y+V  G
Sbjct: 63  TDFAAPNTKFQALVLEYSIAYFSLDLLHCLLFSPNDFVFIFHHLAVLYVFVTCNYIVGCG 122

Query: 132 ALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTFYSILRGGFAPVF 191
           A+PIL LLV+AE SSGCQN WTLAGYRR ++ AAAKF++FV+PYF TFYS+LR G APV 
Sbjct: 123 AVPILGLLVVAELSSGCQNAWTLAGYRRTEMVAAAKFEEFVAPYFLTFYSVLRVGLAPVV 182

Query: 192 LHKMGEFYVSSA--AENLIPKWAWISWMGVIGTAILVSILWVGNHWVLWFRRTKHGKA 247
           + KMGEFYV S   + NLIP WAWISWM VIG AI  S+LWVGNHW+LWF R  + K+
Sbjct: 183 VCKMGEFYVGSLGMSGNLIPTWAWISWMCVIGLAIFGSVLWVGNHWLLWFHRITNTKS 240

[Close]

BLAST of Cp4.1LG01g16050 vs. ExPASy TrEMBL
Match: A0A5A7SSM3 (TLC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002050 PE=4 SV=1)

HSP 1 Score: 334 bits (856), Expect = 3.68e-113
Identity = 169/237 (71.31%), Postives = 196/237 (82.70%), Query Frame = 0


Query: 12  LALLLFFFMFLFVYVFAYLVVLQNWGPKHRIEASSCFISLAHGSPVVIMAIIAILQAPNM 71
           L L LFF MFLFVY FAY V+L+NWGPKHR+EASSCFISLAHG+PVVI+A IAILQ+PN 
Sbjct: 3   LQLPLFFSMFLFVYTFAYSVLLRNWGPKHRLEASSCFISLAHGTPVVILATIAILQSPNP 62

Query: 72  ADFAALNTKYQGLVLEYSMAYFLMDLLHYILFYPRDFVFICHHLAVLYVFATCHYLVRRG 131
            DFAA NTK+Q LVLEYS+AYF +DLLH + F P DFVFI HHLAVLYVF TC+Y+V  G
Sbjct: 63  TDFAAPNTKFQALVLEYSIAYFSLDLLHCVSFSPNDFVFIFHHLAVLYVFVTCNYIVGCG 122

Query: 132 ALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTFYSILRGGFAPVF 191
           A+PIL LLV+AE SSGCQN WTLAGYRR ++ AAAKF++FV+PYF TFYS+LR G APV 
Sbjct: 123 AVPILGLLVVAELSSGCQNAWTLAGYRRTEIVAAAKFEEFVTPYFLTFYSVLRVGLAPVV 182

Query: 192 LHKMGEFYVSSA--AENLIPKWAWISWMGVIGTAILVSILWVGNHWVLWFRRTKHGK 246
           + KMGEFYV S   + NLIP WAWISW+ VIG AI  S+LWVGNHW+LWFR T++ K
Sbjct: 183 VCKMGEFYVGSLVMSGNLIPTWAWISWLCVIGMAIFGSVLWVGNHWLLWFRPTQNRK 239

[Close]

BLAST of Cp4.1LG01g16050 vs. TAIR 10
Match: AT3G25950.1 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein )

HSP 1 Score: 230.3 bits (586), Expect = 1.7e-60
Identity = 116/232 (50.00%), Postives = 158/232 (68.10%), Query Frame = 0


Query: 17  FFFMFLFVYVFAYLVVLQNWGPKHRIEASSCFISLAHGSPVVIMAIIAILQAP--NMADF 76
           F  +FL VY   Y +V + W     + A SC +SL HG+P VIMA  A+L  P  ++  F
Sbjct: 18  FLLLFLAVYTIGYFLVFRTWKQSSHLGA-SCLMSLFHGTPAVIMASHALLTTPRADVHSF 77

Query: 77  AALNTKYQGLVLEYSMAYFLMDLLHYILFYPRDFVFICHHLAVLYVFATCHYLVRRGALP 136
           A+ NT  +  VL++SMAYF +DLLHY++F P DF+FI HH+A LYVFATC + V  GA  
Sbjct: 78  ASPNTAVESNVLDFSMAYFTVDLLHYLIFLPNDFIFILHHIATLYVFATCRFAVGHGAHG 137

Query: 137 ILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTFYSILRGGFAPVFLHK 196
           +L+LL+LAE +S CQNVWT+ GYR+ DV  A + ++ +SP F+ FY+++RG   PV L+ 
Sbjct: 138 LLLLLILAEATSACQNVWTITGYRKNDVALARRVRELLSPPFYLFYTVVRGLAGPVVLYD 197

Query: 197 MGEFYVSSAAENLIPKWAWISWMGVIGTAILVSILWVGNHWVLWFRRTKHGK 247
           M  FY S AA+ ++P+WAW+SW+ VIG AILVSILWV  +W+ WFR     K
Sbjct: 198 MATFYGSGAADGVVPRWAWLSWLVVIGFAILVSILWVLRNWLDWFRENNSSK 248

[Close]

BLAST of Cp4.1LG01g16050 vs. TAIR 10
Match: AT5G14280.1 (DNA-binding storekeeper protein-related )

HSP 1 Score: 224.9 bits (572), Expect = 6.9e-59
Identity = 124/248 (50.00%), Postives = 157/248 (63.31%), Query Frame = 0


Query: 1   MEFQMPENSSPLALLLFFFMFLFVYVFAYLVVLQNWGPKHRIEASSCFISLAHGSPVVIM 60
           M   + E S P  L +FF MFL +Y+ AY +V +NW P+ R EASSC IS+ HGSP V +
Sbjct: 319 MSINIGEISIP-DLPIFFSMFLTIYLIAYFIVFRNWKPQIRPEASSCLISIFHGSPAVFL 378

Query: 61  AIIAILQAPNMADFAALNTKYQGLVLEYSMAYFLMDLLHYILFYPRDFVFICHHLAVLYV 120
           A  A+  +   + FA+ NT  Q  VL++S+AYFL DL HYI+F P D +FI HH+A L+V
Sbjct: 379 ATRAVFSSSERS-FASANTAAQNTVLDFSVAYFLTDLFHYIVFNPNDVLFIGHHVATLFV 438

Query: 121 FATCHYLVRRGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPA--AAKFQDFVSPYFFT 180
           F TC +LV  GA  IL LL+LAE +S CQN WTLAG R+ D  +  A K  D +SP F+ 
Sbjct: 439 FLTCRFLVFHGACAILGLLILAEVTSACQNAWTLAGARKNDPESRLAVKVYDLLSPPFYA 498

Query: 181 FYSILRGGFAPVFLHKMGEFYVSSAAENLIPKWAWISWMGVIGTAILVSILWVGNHWVLW 240
           FYSI+RG   P+F  KM  FY    A  +IP W WISW  V+G AI VSILW+ N W+  
Sbjct: 499 FYSIVRGVLGPLFFGKMVAFYARGGAHGVIPNWLWISWAIVVGIAITVSILWIWNLWIEL 558

Query: 241 FRRTKHGK 247
           F   K  K
Sbjct: 559 FSERKANK 564

[Close]

BLAST of Cp4.1LG01g16050 vs. TAIR 10
Match: AT3G27270.1 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein )

HSP 1 Score: 203.4 bits (516), Expect = 2.2e-52
Identity = 111/230 (48.26%), Postives = 149/230 (64.78%), Query Frame = 0


Query: 14  LLLFFFMFLFVYVFAYLVVLQNWGPKHRIEASSCFISLAHGSPVVIMAIIAILQAPNMAD 73
           L LFF +F+FVY+  YL + + W P+ R  ASSC ISL HG   V++A  A+L  PN   
Sbjct: 10  LPLFFSIFIFVYLLGYLFIFKKWTPETRPLASSCLISLLHGVSAVVLATNALLSDPNRG- 69

Query: 74  FAALNTKYQGLVLEYSMAYFLMDLLHYILF---YPRDFVFICHHLAVLYVFATCHYLVRR 133
           F+++NT+ Q  +L++S AYFL DL+H  +F      D +F  HHLAVL+VF TC Y+V  
Sbjct: 70  FSSVNTQSQNSILDFSSAYFLADLVHLAVFPSPAGGDSLFAAHHLAVLFVFLTCRYMVAH 129

Query: 134 GALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTFYSILRGGFAPV 193
           GA  +L LLV+AE +S CQN WTLA  R  D P A     FV+  F+  YS+ R   AP+
Sbjct: 130 GACALLALLVVAEATSACQNTWTLADARGKDAPLAVSLHRFVTVPFYASYSVCRCVLAPL 189

Query: 194 FLHKMGEFYVSSAAENLIPKWAWISWMGVIGTAILVSILWVGNHWVLWFR 241
            + KM  FYVS  A+++IP+W W+SW  VI TA+ VSILW+ N WVL+F+
Sbjct: 190 LIVKMTWFYVSGGADDVIPRWVWVSWTVVIVTAVTVSILWIWNLWVLFFQ 238

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g16050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GYK7	9.8e-58	50.00	TLC domain-containing protein At5g14285 OS=Arabidopsis thaliana OX=3702 GN=At5g1...	[more]

BLAST of Cp4.1LG01g16050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023554709.1	9.69e-178	100.00	TLC domain-containing protein At5g14285-like [Cucurbita pepo subsp. pepo]	[more]
XP_022956623.1	2.44e-169	95.98	TLC domain-containing protein At5g14285-like [Cucurbita moschata]	[more]
KAG6601580.1	3.00e-169	97.55	TLC domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia] >...	[more]
XP_022998555.1	1.35e-166	94.78	TLC domain-containing protein At5g14285-like [Cucurbita maxima]	[more]
XP_022151969.1	1.46e-133	75.00	TLC domain-containing protein At5g14285-like [Momordica charantia]	[more]

BLAST of Cp4.1LG01g16050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GXG9	1.18e-169	95.98	TLC domain-containing protein At5g14285-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1KCU9	6.56e-167	94.78	TLC domain-containing protein At5g14285-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1DEM0	7.07e-134	75.00	TLC domain-containing protein At5g14285-like OS=Momordica charantia OX=3673 GN=L...	[more]
A0A0A0KVB7	9.73e-114	71.43	TLC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G590130 PE=4 SV...	[more]
A0A5A7SSM3	3.68e-113	71.31	TLC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of Cp4.1LG01g16050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25950.1	1.7e-60	50.00	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	[more]
AT5G14280.1	6.9e-59	50.00	DNA-binding storekeeper protein-related	[more]
AT3G27270.1	2.2e-52	48.26	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006634	TRAM/LAG1/CLN8 homology domain	SMART	SM00724	lag1_27	coord: 39..243 e-value: 6.8E-19 score: 78.8
IPR006634	TRAM/LAG1/CLN8 homology domain	PROSITE	PS50922	TLC	coord: 39..243 score: 9.441866
IPR040327	TLC domain-containing protein At5g14285-like	PANTHER	PTHR31766	GLABROUS1 ENHANCER-BINDING PROTEIN-LIKE 2	coord: 13..244
None	No IPR available	PANTHER	PTHR31766:SF8	TRAM, LAG1 AND CLN8 (TLC) LIPID-SENSING DOMAIN CONTAINING PROTEIN	coord: 13..244

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g16050.1	Cp4.1LG01g16050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane