Cp4.1LG01g15980 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g15980
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG01: 9777053 .. 9781452 (+)
RNA-Seq ExpressionCp4.1LG01g15980
SyntenyCp4.1LG01g15980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGGAAAATAGTTTTAAATTCCTATTGTTTTCAACAAATTATAAAATATTTTTGAAAACCGAACCGACTTAAATGAAATGATCCGGTCGGTTTTATATTTTTGAATAAAACCGAACCGACTTATATCCTTCCCATATGAATTGGTGAGGTTGTCGTTTGATGAAGAGGAAGAGATTCAAACGAGTAACCGCGGGATCTTTTCAAACCCTAAGAATCGGCAGTGTCATGGAAGACGAGATTGGAGAAGAGTTCGAGAGGAGTGGTTTCACGTTTGACGAAGAGTAAGAGATTCTCAAGAAATGTAAGCTCTACTTCTCATTTTTGTTTGGTTTATGTTCATGATTGGTTAGCATTGACGCGCGATTCCTCCCGCTTCTGTATTGGATCTTTCGTTGTGTGTTCATTACAATCTTTGCCTTCAGATATAGATTCTCAATAGATGACTGTTTATACTAAATTGATGAGGCAGATCCATCAGTTCTTTAATGATTAAATTATTAAAGATCGCCTTATTCTGCAGCCTGCTTTTGACATTACATCTGATCTTAGGCTTCTGGTAACTTATTCTTAGGATTTGAGTTACTTCCAAATCTGGAGCTTCATTATGTTGAGTAATGATTACTGTTGAACTATATTGGTTTTGGTTCAGATATCCAGTCTCCCAACCCAGGCTTTTTGGAAGCAAATCAGGTAAAACATGGATACAACTTTGCATTTCCAAACAAGTTTTTTATGAATATCTTATTTTCATCCAGATTTTCTATGTTGGACGTTTGAAGTTTGCTATCACTGTTTATCAATTAATAGCTGGTTGTTTTGTTACTATGAAAAGAAAGAAAGAAAGAAAGAGGGAAAAATGAGCGCTGGATGCTCCACTGTAAAGTCGAGTCTATTCATTAGCAGCTTTACCTATTTACCTGTTACCTGATTTAAAAAAGACATCAACATATAACGAAGCGAAACAAAAAAAAAAAAAAAAAAAAAAAAANGATCCCATTACGATCATCTTAGCCTTTAGTTTGTTGTACGTGATGTGTGTTTATTCTGGAGTAGGAATAACAATAACCGTCCTTCGGTATTCTATTGCTTACAAGTGAAGAATTACATTTAGTTTAGGGTATCGTGCACCTACACTTGCTTAGTTTATACCATGAGATAATTTTTTAGTTCTTAATTCTTATCAGAAAAAAAAGGGGGAAAAGGACTTTTGAACATTCGTTGTTCTTGCGCTTCTCTTTGGATATCTGACAGGAGAAAAAGAAACCAGTGCACAATGGGGGACTCCTTGGGGGATGATCCTTTTGATTTGCTACCTGAGTTCCCTTCTGCACTTGATTTGATTTTTGTTCTTTTGTTATTTTAATTTGAGGGAGAAGGGATTGGAAAGAAAGATTGATCGGAAATGTAAGAGAGTTCTAAATTATGAACAAAAAAGCCATTCCTCCTACCCACATAATATAATTCTAAAAAACTCAGGAAATAACCATGCAATGGTTTTCTGTGAACTCTGTTGGTCAAGCCTGTTTTAGCTGATGTAACGCCCCTACACCAGAGTAGGGAAGATAATCAAATATTGACAGTCTTCATTTTTTGAAACCCAGACTACCTAGTTTTCTTCGTTGTTGCAATGAAATGACACGATGGTTGTAAATTTTCAAAGCATACAGAACTGATGTCTGATGCATACTAATACATAATGAATTCTGATATTTCCATCGATAATGGATTTCAGGCAAAGATAACCTGCTGCACCATGGATAGGATATTCTCAGACAAAGAGCGGGACTACGGTAATCCTAGTAAGTTGAATCTAAGAACCCTCATGATATGCAAATCCTTAGTTCATAAACAAATCAATTTGATTTTTTTTTTTGTTTAGATGATTGCAATTCTTGGAAATTTGATCTAAGAACCTTGTTGAAGAATAAGAATTTTAGATCTAAATATATCCAAGAACCTCAAGGGGAAATAAGATTCGGGTTATCTTGTTGATCGAATACCTCAAGGCAAGATCACTTGTTTGAGATTCAAATCACTCCACAAGTAAGATCGACCATGCCAAGCTTGCATGATTCTAAACATTCAACCTAAACTACATAGAATTGCAAAGAAACTTAGCAATTGGCTAAAAGAAAGCACAAAAGCACAAATGCATTTACTACATTTTTGAAGTCTACTTTACAAAGATAATATACCTGGCTTTGTATAGCCACAAAATGAAGGCCTTTAACCTTCCATGAGACATTTCAAGAGTGATAACTTTCATCCAATGTTCTCATTCTTCTATCCAACATGAAACGCTCGGGGAAGGTAAGGGATTGTCCACATCATTTCATTGTTGTACAGTACAATTTACGTATTACTGTCAGTTTTGCCTTTTATCTTACATCAATTATTTATTGTCAAAACTTCGTCTGTGATGAAAGCAAAGTGTGACAATTTTGATACATGTTATAGTAGACCAGCGACTAGAGCTCAACCTCATATTTTGCCTTTAAGCAGATAAAACGTACATGTTTGTAAGAGCTTCAATGACCTTCCACTTCGTCAGGTTATATCCCTCAATGAAGGAGGTTCAGAGGAAGAGCAAGAGAGCTGCGTATGTGTGAATCCCGAAACATCAGCCAAGGATGAAGGAGTACTTTTGTAAAGCTATTCGGCACGCCTGACCAGATAAATTCTTCAGTTGTCAGCATATGAATAGTGGACTTGCTGTCTAGCCCTCTCTGTTTGACTCATACGATGGACCTGCCAAATCTTGTTCAGTTTCAGTTTCAACACGACCCTTAAGTTACAGGTAACAGAATTGGTTGTAGTTTAATTCATTAAATTATCAAATAGATATGAGATTTTCAATAGAATACTATAGTGTATATTATTGTCCTTGTGAAAGAGGAGAGCAGGGCGGTTATACCTTGGGAAAGAATTCATTGGTTAGTTTAGCATAGCTCAATTGGTCAGTGTATTAGTCATAGTAGCTTTTCAAAAATAGTAAGTTTGAATCTTTCACTACTCGTGTTGGAATTGTTATACTAAGAAACTGAAGAAAAAAAGGAACTAATTTGATCGTGAGATATGCATATTAGTAGAAATTTTAAAAATTAAATAATAGCATAAACAATTCAACCACCTGTTGTCATCCTTATCCCTAAGCCTAAGCTAAATAAGAATTAAAAGTCTAAAATACGTTCACACTGCTTTCCCATGCTTTGTACGTCGAAACCAGAGAACCCAATGATTTCCGACCCACAATATGCTAACTAAAATGGCAGTTCCAATTACACCCATCCATGAAATCCAAGCCCACTTAGGAATCAAATTTTCTGCTGCACTGCTGACATAAAATTCTCCCATCTTATGCAGAAAGACAGGCGCGAAGCCCCCTCTGAGAATGCTGTAAAAGGTGAAGAAATATGGAGACACGAAGTCCTGAAACTTAGCGGCGGCCGGCACATCAGCCCTTCTGTAACCCGCTAGGGTCCAAACATTCTGGCACCCACTGCTGAACTCCGCGAGCACCAAAAGCACCAGAATGGGCAGAGCACCACGACGAACCAAGTAATGGCATGTAGCGAACACGTAAAGCACTGCCAGATGATGACATATAAAGACGAAATCTCGTGGATAAAACAGTATGTAGTGAAGAAGATCCATCAAGAAATAAGCCATGCTGTACTCGAGGACAAGGCCCTGGTATTTGGTATTGAGAGCGGCGAAATCAGCCATGTTTGGAGCTTGGAGAATTGCAATGATGGCCATGATGACGACGGGACTGCCATGGGCGAGTGATATGAAGCAGCTTGAGGCCTCTATCCTGTGCTTGGGCCCCCAGTTCTGGAGCACAACCAAGTAAGCGAATACATATACAAATAGAAACATGAAGAAGAACAACAACAAGGCCAATGGTGATGAGTTCTCGGGCATTTGAAACTCCATCGAGATCGATACTCGAACTGCAAAAAGCTCTGCCAATGACTGAGGAGAAACAAAAAAGAAAGTGGGTATAAATTCTGATGGGTAGAGAAGTTATGCTTTTAAATGGAATATTCCAAGGCTTTCAAGTGGAGGGAATTGGCCTCTACAAGTCGGGTCTTCCTTTTCTTCTTATACCACTTCTTCAAATTAAAGCAACCTCTCCATTGGCTTGGCTGTGCGGCGGGGCTGGCGGCGGGGCAGACTTAATAGCTGCAACCGATAACCAAATCCTGTGTGGATTAGGCCTTATTATCGAGTCCTATGTGGATTAGGCTTTTTAAGTTTCGTGCACGATTAATTATCTTAATTAAGTATCTGTGTTATTTATTCGAATTTCAAATTTGTGTTTAATTGGTGGAAATTAGATAAACGTTAAAATTTTGACTCAGTCTTTGGATGCCTAGTATCACACCCATTAAGGAA

mRNA sequence

AAAAGGAAAATAGTTTTAAATTCCTATTGTTTTCAACAAATTATAAAATATTTTTGAAAACCGAACCGACTTAAATGAAATGATCCGGTCGGTTTTATATTTTTGAATAAAACCGAACCGACTTATATCCTTCCCATATGAATTGGTGAGGTTGTCGTTTGATGAAGAGGAAGAGATTCAAACGAGTAACCGCGGGATCTTTTCAAACCCTAAGAATCGGCAGTGTCATGGAAGACGAGATTGGAGAAGAGTTCGAGAGGAGTGGTTTCACGTTTGACGAAGAGTAAGAGATTCTCAAGAAATGATTTGAGTTACTTCCAAATCTGGAGCTTCATTATGTTGAGTAATGATTACTGTTGAACTATATTGGTTTTGGTTCAGATATCCAGTCTCCCAACCCAGGCTTTTTGGAAGCAAATCAGGTTATATCCCTCAATGAAGGAGGTTCAGAGGAAGAGCAAGAGAGCTGCGTATGTGTGAATCCCGAAACATCAGCCAAGGATGAAGGAGTACTTTTGTAAAGCTATTCGGCACGCCTGACCAGATAAATTCTTCAGTTGTCAGCATATGAATAGTGGACTTGCTGTCTAGCCCTCTCTGTTTGACTCATACGATGGACCTGCCAAATCTTGTTCAGTTTCAGTTTCAACACGACCCTTAAGTTACAGAAAGACAGGCGCGAAGCCCCCTCTGAGAATGCTGTAAAAGGTGAAGAAATATGGAGACACGAAGTCCTGAAACTTAGCGGCGGCCGGCACATCAGCCCTTCTGTAACCCGCTAGGGTCCAAACATTCTGGCACCCACTGCTGAACTCCGCGAGCACCAAAAGCACCAGAATGGGCAGAGCACCACGACGAACCAAGTAATGGCATGTAGCGAACACGTAAAGCACTGCCAGATGATGACATATAAAGACGAAATCTCGTGGATAAAACAGTATGTAGTGAAGAAGATCCATCAAGAAATAAGCCATGCTGTACTCGAGGACAAGGCCCTGGTATTTGGTATTGAGAGCGGCGAAATCAGCCATGTTTGGAGCTTGGAGAATTGCAATGATGGCCATGATGACGACGGGACTGCCATGGGCGAGTGATATGAAGCAGCTTGAGGCCTCTATCCTGTGCTTGGGCCCCCAGTTCTGGAGCACAACCAAGTAAGCGAATACATATACAAATAGAAACATGAAGAAGAACAACAACAAGGCCAATGGTGATGAGTTCTCGGGCATTTGAAACTCCATCGAGATCGATACTCGAACTGCAAAAAGCTCTGCCAATGACTGAGGAGAAACAAAAAAGAAAGTGGGTATAAATTCTGATGGGTAGAGAAGTTATGCTTTTAAATGGAATATTCCAAGGCTTTCAAGTGGAGGGAATTGGCCTCTACAAGTCGGGTCTTCCTTTTCTTCTTATACCACTTCTTCAAATTAAAGCAACCTCTCCATTGGCTTGGCTGTGCGGCGGGGCTGGCGGCGGGGCAGACTTAATAGCTGCAACCGATAACCAAATCCTGTGTGGATTAGGCCTTATTATCGAGTCCTATGTGGATTAGGCTTTTTAAGTTTCGTGCACGATTAATTATCTTAATTAAGTATCTGTGTTATTTATTCGAATTTCAAATTTGTGTTTAATTGGTGGAAATTAGATAAACGTTAAAATTTTGACTCAGTCTTTGGATGCCTAGTATCACACCCATTAAGGAA

Coding sequence (CDS)

ATGGGTAGAGAAGTTATGCTTTTAAATGGAATATTCCAAGGCTTTCAAGTGGAGGGAATTGGCCTCTACAAGTCGGGTCTTCCTTTTCTTCTTATACCACTTCTTCAAATTAAAGCAACCTCTCCATTGGCTTGGCTGTGCGGCGGGGCTGGCGGCGGGGCAGACTTAATAGCTGCAACCGATAACCAAATCCTGTGTGGATTAGGCCTTATTATCGAGTCCTATGTGGATTAG

Protein sequence

MGREVMLLNGIFQGFQVEGIGLYKSGLPFLLIPLLQIKATSPLAWLCGGAGGGADLIAATDNQILCGLGLIIESYVD
Homology
[Close]
BLAST of Cp4.1LG01g15980 vs. NCBI nr
Match: KAG6601581.1 (hypothetical protein SDJN03_06814, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139 bits (350), Expect = 6.99e-41
Identity = 72/82 (87.80%), Postives = 73/82 (89.02%), Query Frame = 0 

Query: 1  MGREVMLLNGIFQGFQVEG-IGLYKSGLPFLLIPLLQIKATSPLAWLCGGAGGGA----D 60
          MGREVMLLNGIFQGFQ EG  GLYKSGLPFLLIPLLQIKATSPLAW CGGAGG A    D
Sbjct: 1  MGREVMLLNGIFQGFQAEGNFGLYKSGLPFLLIPLLQIKATSPLAWRCGGAGGRAGGRAD 60

Query: 61 LIAATDNQILCGLGLIIESYVD 77
          LIAATDNQILCGLGLII+SYVD
Sbjct: 61 LIAATDNQILCGLGLIIKSYVD 82

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g15980 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g15980 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6601581.16.99e-4187.80hypothetical protein SDJN03_06814, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Cp4.1LG01g15980 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g15980 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g15980.1Cp4.1LG01g15980.1mRNA