Cp4.1LG01g15950 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g15950
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG01: 9686497 .. 9688599 (-)
RNA-Seq ExpressionCp4.1LG01g15950
SyntenyCp4.1LG01g15950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CACCGATGGCTCGAGCCCTAATAAGGCTTCTACCCATCTCAATTGATGTTTCAACAGCCAAATACTAGTCTTGGAACAGTACTATCCAAAAAAGAGTGGATTATCAATCTCAACGTTTAAAAGTTTCAATCAAAGGGAAATGAGAGAAATTCAAAGACTTATCTAGAAACACACAATCAAAGGATGAACACAAATTTGGGAGAGTAGAGGGACTTACCCCATAAACAATTTCTTTGTCGAAGTCAGACTCAAAGATGAATTGGACGACGAAGAAGGGGCTATGATGGAGCCAAGGACGTGGCGGGTTACATTGATTGTTGGGTTCACTGCATTTCTTCCCCTAGCAATCAAGTCAATTTCGGCAATTCATTTGAAACATCCCCACAAATTGGGTCACTTAGGTACGTCCCCACAAAGTTAGGTCGCTGATTTTCGGAACCCTTGTCTCGATTCTAAACTTCTCTTTGATTGTTCTGAAATGGGTTTGTGTTAATTTTCTCCGACCCCCAATGGACCTGATGAAATACAGCTCGTGGCCGCTTCTGACCGGACCCACCGATGGTATTGTCGAGGGCCTCGCTATTCAATGCTCTCAGAAAAGTGCTTGATCTCATCTTGGTGGGTCCAAAGCACGAAGAATTTAGAAGGGTTTCGGACCCGATTCTGTCAAAATCAAGGATGGATCTCTTCCAACTGCCTCATGTTGAACACAAGGGTAATGGGATTGATCTTCAGTCTCAGGTACAGTAATATGTTTATGAGCTTTTCTACATAAAAGTGGCAATTCAAGCATTGTTTTTATGCATTTTGGTCAAGAAAATGCTCCCATTAAGGTTTATACACTCTAGACAGAGTCTTGTTGCTGCCTGTTTACAAAGAGCCTCACTAATTGATTCAGTATCTGAAAAGAGTGCAATAACCATTCATTTTGTTTCATGTTGTAGAACTAGTGGGATCTTTATTTGTTTTTCCTTCTTTATAGACATGGACTGGATCATATTGGTTTCTATACCTTAAGCCACAAAACACCCTTTTGGGCTTCCTTTCAAAGTTTTTAAACGTTAGGGACATGGACTGGATCATATTGGTTTCTAGCACTACTTCCTTTCTCCAATCTTTGTGAGACCCCCCAATCCACCTCCTTCAGGACCCAGCGTCCTTGTTGACACACCGCCTCATGTCCACCACCTTCGGAGTTTAGCCTCCTCTCTGGCACATCGCTTGGTGTCTAGTTCTAATATCATTTGTAAGCCCACTACTAGTAAATATTGTCCTCTTTGGACCTTCCCTTTCGGACTTCTCCTTAAAGTTTTTAAAACGCGTTTGCTAGGGAGAGATTTCCAGACCCTTATAAAGAATGTTTCATTCTCCTCTCCAACCGACGTGGGATCTCACGTATGTAGAGCATTGATATGAACTAAGAGATATATTAAAGAGCTTAGACGAAATNAATTCGAGTGGCTGAAGCTGAAGCAGCTACTTTCGAAGTAACAGAAAGAAAAGCAACGACTGGAGTGGGAGAGTCAGAGTCGAAAAGAGGATTCCTCACTTCTTTCTCTCATTCAAAACCGTGCATGAGACTTTCATCTCGCACGGCTCCTAAGCTAAGTGATAAAAGAAAGAAGAACTCATCTTCTTTCCTTTTTTTATTACCTTCCTCGCGTATGTATAGGACCGAATCCATTCAATTTGTAAAAAGGATTACTAATCTTTAACTTTTCGAAGAATCGTTCATCCGTGGTTGTGGATGTGGATGACTGATTTAAGTGTAAAGCCATTCAAAAGGTTATATGAAAATCACTTGTAATAAACTTCTTAATCACATTTGTTTAGCAGTGTTCAAAGCTGTTTGTGCCATCAGATCTCAAATTGCTTGGCTTATCTGTGATTCTTACCGTGTGTCCTTCAGTGATTACTTTGGAGTTTGTATCACATCTTTATTTCAAAATGAGTTTTTCTCCATCAACTAGCCATGGGTTTGCTGCTATATTTCATGATTATGAACAAAATTTCATTCCATCCCTCATGAGTTCTAATGACTTGCAAAGCTACCCTCTGTGTGCAGTGACACATGAGAGTGACATGAAGTTTTCTAATAAATGA

mRNA sequence

CACCGATGGCTCGAGCCCTAATAAGGCTTCTACCCATCTCAATTGATGTTTCAACAGCCAAATACTAGTCTTGGAACAGTACTATCCAAAAAAGAGTGGATTATCAATCTCAACGTTTAAAAGTTTCAATCAAAGGGAAATGAGAGAAATTCAAAGACTTATCTAGAAACACACAATCAAAGGATGAACACAAATTTGGGAGAGTAGAGGGACTTACCCCATAAACAATTTCTTTGTCGAAGTCAGACTCAAAGATGAATTGGACGACGAAGAAGGGGCTATGATGGAGCCAAGGACGTGGCGGGTTACATTGATTGTTGGGTTCACTGCATTTCTTCCCCTAGCAATCAAGTCAATTTCGGCAATTCATTTGAAACATCCCCACAAATTGGGTCACTTAGGTACGTCCCCACAAAGTTAGGTCGCTGATTTTCGGAACCCTTGTCTCGATTCTAAACTTCTCTTTGATTGTTCTGAAATGGGTTTGTGTTAATTTTCTCCGACCCCCAATGGACCTGATGAAATACAGCTCGTGGCCGCTTCTGACCGGACCCACCGATGGTATTGTCGAGGGCCTCGCTATTCAATGCTCTCAGAAAAGTGCTTGATCTCATCTTGGTGGGTCCAAAGCACGAAGAATTTAGAAGGGTTTCGGACCCGATTCTGTCAAAATCAAGGATGGATCTCTTCCAACTGCCTCATGTTGAACACAAGGGTAATGGGATTGATCTTCAGTCTCAGTGTTCAAAGCTGTTTGTGCCATCAGATCTCAAATTGCTTGGCTTATCTGTGATTCTTACCGTGTGTCCTTCAGTGATTACTTTGGAGTTTGTATCACATCTTTATTTCAAAATGAGTTTTTCTCCATCAACTAGCCATGGGTTTGCTGCTATATTTCATGATTATGAACAAAATTTCATTCCATCCCTCATGAGTTCTAATGACTTGCAAAGCTACCCTCTGTGTGCAGTGACACATGAGAGTGACATGAAGTTTTCTAATAAATGA

Coding sequence (CDS)

ATGGTATTGTCGAGGGCCTCGCTATTCAATGCTCTCAGAAAAGTGCTTGATCTCATCTTGGTGGGTCCAAAGCACGAAGAATTTAGAAGGGTTTCGGACCCGATTCTGTCAAAATCAAGGATGGATCTCTTCCAACTGCCTCATGTTGAACACAAGGGTAATGGGATTGATCTTCAGTCTCAGTGTTCAAAGCTGTTTGTGCCATCAGATCTCAAATTGCTTGGCTTATCTGTGATTCTTACCGTGTGTCCTTCAGTGATTACTTTGGAGTTTGTATCACATCTTTATTTCAAAATGAGTTTTTCTCCATCAACTAGCCATGGGTTTGCTGCTATATTTCATGATTATGAACAAAATTTCATTCCATCCCTCATGAGTTCTAATGACTTGCAAAGCTACCCTCTGTGTGCAGTGACACATGAGAGTGACATGAAGTTTTCTAATAAATGA

Protein sequence

MVLSRASLFNALRKVLDLILVGPKHEEFRRVSDPILSKSRMDLFQLPHVEHKGNGIDLQSQCSKLFVPSDLKLLGLSVILTVCPSVITLEFVSHLYFKMSFSPSTSHGFAAIFHDYEQNFIPSLMSSNDLQSYPLCAVTHESDMKFSNK
Homology
[Close]
BLAST of Cp4.1LG01g15950 vs. NCBI nr
Match: KAG6601566.1 (hypothetical protein SDJN03_06799, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 233 bits (594), Expect = 3.00e-76
Identity = 126/149 (84.56%), Postives = 130/149 (87.25%), Query Frame = 0 

Query: 1   MVLSRASLFNALRKVLDLILVGPKHEEFRRVSDPILSKSRMDLFQLPHVEHKGNGIDLQS 60
           MVLSRASLFNALRK LDLILVGPKHEEFRRVSDPILSKSRMDLF         N + L +
Sbjct: 1   MVLSRASLFNALRKALDLILVGPKHEEFRRVSDPILSKSRMDLF---------NWLTLNT 60

Query: 61  QCSKLFVPSDLKLLGLSVILTVCPSVITLEFVSHLYFKMSFSPSTSHGFAAIFHDYEQNF 120
           +  KLFVPSDLKLLGLSVILTVCPSVIT+EFVSHLYFK SFSP TSH FAAIFHDYEQNF
Sbjct: 61  RFPKLFVPSDLKLLGLSVILTVCPSVITMEFVSHLYFKTSFSPPTSHEFAAIFHDYEQNF 120

Query: 121 IPSLMSSNDLQSYPLCAVTHESDMKFSNK 149
           IPSLMSSNDLQSY LCAVTHESDMKFSNK
Sbjct: 121 IPSLMSSNDLQSYTLCAVTHESDMKFSNK 140

[Close]
BLAST of Cp4.1LG01g15950 vs. NCBI nr
Match: KAG7032328.1 (hypothetical protein SDJN02_06373, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 84.7 bits (208), Expect = 3.67e-18
Identity = 43/44 (97.73%), Postives = 43/44 (97.73%), Query Frame = 0 

Query: 1  MVLSRASLFNALRKVLDLILVGPKHEEFRRVSDPILSKSRMDLF 44
          MVLSRASLFNALRK LDLILVGPKHEEFRRVSDPILSKSRMDLF
Sbjct: 1  MVLSRASLFNALRKALDLILVGPKHEEFRRVSDPILSKSRMDLF 44

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g15950 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g15950 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6601566.13.00e-7684.56hypothetical protein SDJN03_06799, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7032328.13.67e-1897.73hypothetical protein SDJN02_06373, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Cp4.1LG01g15950 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g15950 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g15950.1Cp4.1LG01g15950.1mRNA