Cp4.1LG01g15810 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g15810
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG01: 9723421 .. 9723897 (+)
RNA-Seq ExpressionCp4.1LG01g15810
SyntenyCp4.1LG01g15810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGGTAAGAAGCACGCAGCATTAAATTTGCAGCAATCAATAGGTTTAATGCTTATCTTGATTGTTAACATGCTTAGTTATTGGGTTTTGGGTATTCTAAGGAAGGAAGGAAGGAAGGTCTGACTTGGAAACAATGCAATCCCCGACTAAGAAACAATGGATAAACACTAAACAGAAGGTATCCTTTTCTTGTCTTAAAGTGTCAAAGGTTTGAAGTTTGAAATCAAAGCAAGGTTTTACCCACATCTCCTTCTTTCCCTCGTTTTTTAGATGTCTGGACACGGCCTTTCCATAAATATATCTCTTCTTTTCTCAACATCATCTGCTGCTGCTGCTCTGTTCTGTCGGGTTGGAAGGAGAAAGAATGTGGCAACAACAGCCCAAAAGGTACTCGTTTAAAGAATCTGTCAAGGCTGTTGAAGCTGATATACGACGTGCAAATGCCTTGTAAGATCTTCTATTGGGGTTCTATTC

mRNA sequence

ATGTTGGGAAGGAAGGAAGGAAGGTCTGACTTGGAAACAATGCAATCCCCGACTAAGAAACAATGGATAAACACTAAACAGAAGATGTCTGGACACGGCCTTTCCATAAATATATCTCTTCTTTTCTCAACATCATCTGCTGCTGCTGCTCTGTTCTGTCGGGTTGGAAGGAGAAAGAATGTGGCAACAACAGCCCAAAAGGTACTCGTTTAAAGAATCTGTCAAGGCTGTTGAAGCTGATATACGACGTGCAAATGCCTTGTAAGATCTTCTATTGGGGTTCTATTC

Coding sequence (CDS)

ATGTTGGGAAGGAAGGAAGGAAGGTCTGACTTGGAAACAATGCAATCCCCGACTAAGAAACAATGGATAAACACTAAACAGAAGATGTCTGGACACGGCCTTTCCATAAATATATCTCTTCTTTTCTCAACATCATCTGCTGCTGCTGCTCTGTTCTGTCGGGTTGGAAGGAGAAAGAATGTGGCAACAACAGCCCAAAAGGTACTCGTTTAA

Protein sequence

MLGRKEGRSDLETMQSPTKKQWINTKQKMSGHGLSINISLLFSTSSAAAALFCRVGRRKNVATTAQKVLV
Homology
[Close]
BLAST of Cp4.1LG01g15810 vs. NCBI nr
Match: KAG6601571.1 (E3 ubiquitin-protein ligase AIRP2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.6 bits (200), Expect = 1.67e-16
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 5  KEGRSDLETMQSPTKKQWINTKQKMSGHGLSINISLLFSTSSAAAAL 51
          KEGRSDLETMQSPTKKQWINTK KMSGHGLS NISLLFSTSS   ++
Sbjct: 17 KEGRSDLETMQSPTKKQWINTKHKMSGHGLSTNISLLFSTSSGCCSV 63

[Close]
BLAST of Cp4.1LG01g15810 vs. NCBI nr
Match: KAG7032335.1 (hypothetical protein SDJN02_06380 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 78.2 bits (191), Expect = 2.83e-16
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 6  EGRSDLETMQSPTKKQWINTKQKMSGHGLSINISLLFSTSSAAAAL 51
          EGRSDLETMQSPTKKQWINTK KMSGHGLS +ISLLFSTSS   ++
Sbjct: 12 EGRSDLETMQSPTKKQWINTKHKMSGHGLSTSISLLFSTSSGCCSV 57

[Close]
BLAST of Cp4.1LG01g15810 vs. NCBI nr
Match: XP_022998292.1 (uncharacterized protein LOC111492969 isoform X1 [Cucurbita maxima])

HSP 1 Score: 72.8 bits (177), Expect = 4.37e-13
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 4  RKEGRSDLETMQSPTKKQWINTKQKMSGHGLSINISLL 41
          R EG+SDLETMQSPTKKQWINTKQKMSGHGLS NISLL
Sbjct: 18 RMEGKSDLETMQSPTKKQWINTKQKMSGHGLSTNISLL 55

[Close]
BLAST of Cp4.1LG01g15810 vs. NCBI nr
Match: XP_022998299.1 (uncharacterized protein LOC111492969 isoform X2 [Cucurbita maxima])

HSP 1 Score: 71.6 bits (174), Expect = 1.01e-12
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 6  EGRSDLETMQSPTKKQWINTKQKMSGHGLSINISLL 41
          EG+SDLETMQSPTKKQWINTKQKMSGHGLS NISLL
Sbjct: 2  EGKSDLETMQSPTKKQWINTKQKMSGHGLSTNISLL 37

[Close]
BLAST of Cp4.1LG01g15810 vs. ExPASy TrEMBL
Match: A0A6J1K7J3 (uncharacterized protein LOC111492969 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492969 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.11e-13
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 4  RKEGRSDLETMQSPTKKQWINTKQKMSGHGLSINISLL 41
          R EG+SDLETMQSPTKKQWINTKQKMSGHGLS NISLL
Sbjct: 18 RMEGKSDLETMQSPTKKQWINTKQKMSGHGLSTNISLL 55

[Close]
BLAST of Cp4.1LG01g15810 vs. ExPASy TrEMBL
Match: A0A6J1KDZ0 (uncharacterized protein LOC111492969 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492969 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.91e-13
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 6  EGRSDLETMQSPTKKQWINTKQKMSGHGLSINISLL 41
          EG+SDLETMQSPTKKQWINTKQKMSGHGLS NISLL
Sbjct: 2  EGKSDLETMQSPTKKQWINTKQKMSGHGLSTNISLL 37

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g15810 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g15810 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6601571.11.67e-1685.11E3 ubiquitin-protein ligase AIRP2, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7032335.12.83e-1682.61hypothetical protein SDJN02_06380 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022998292.14.37e-1392.11uncharacterized protein LOC111492969 isoform X1 [Cucurbita maxima][more]
XP_022998299.11.01e-1294.44uncharacterized protein LOC111492969 isoform X2 [Cucurbita maxima][more]
BLAST of Cp4.1LG01g15810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K7J32.11e-1392.11uncharacterized protein LOC111492969 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1KDZ04.91e-1394.44uncharacterized protein LOC111492969 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of Cp4.1LG01g15810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g15810.1Cp4.1LG01g15810.1mRNA