Cp4.1LG01g15790 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g15790
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	photosystem II core complex proteins psbY, chloroplastic-like
Location	Cp4.1LG01: 9681334 .. 9681870 (+)
RNA-Seq Expression	Cp4.1LG01g15790
Synteny	Cp4.1LG01g15790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCAACAATGGCGACCATGGCGATCCTCAACGCCAAATGCTTCACCCCCAACAGAACCCCCCCACCACTCCTTCCCTCAAAGCCCACAACACCCCTCTCCCTCCCAGTCCCCTCACCCAAATCTTCCCTCGCTGGATCCGCCATTGCCGGAGCAATCTTCTCCACTTTGAGCTTCACCGACGCCGCCTTCGCCGCCCAACAAATCGCCGATCTAGCCGAGGGCGACAACCGTGGGTTGGCTCTGTTGCTGCCGCTTATCCCGGCTGTGGCTTGGGTTCTCTTCAATATTCTTCAGCCGGCGCTGAATCAGATCAACCGGATGCGGACTGAGAAGGCGGTGATTGCCGGATTGGGTCTCGGCGGGCTGTTGGCGTCTGGGCTGGTCGGGACGCCGGAGGCAATGGCGGCGGAGGCTTCCAACGACGCGAGAGGACAGCTGCTGCTGATTGTGGTGGCGCCGGCGATTCTGTGGGTTCTGTATAATATCCTTCAGCCGGCGTTGAACCAGCTGAATCGGATGAGGTCGGAGTGA

mRNA sequence

ATGGCGGCAACAATGGCGACCATGGCGATCCTCAACGCCAAATGCTTCACCCCCAACAGAACCCCCCCACCACTCCTTCCCTCAAAGCCCACAACACCCCTCTCCCTCCCAGTCCCCTCACCCAAATCTTCCCTCGCTGGATCCGCCATTGCCGGAGCAATCTTCTCCACTTTGAGCTTCACCGACGCCGCCTTCGCCGCCCAACAAATCGCCGATCTAGCCGAGGGCGACAACCGTGGGTTGGCTCTGTTGCTGCCGCTTATCCCGGCTGTGGCTTGGGTTCTCTTCAATATTCTTCAGCCGGCGCTGAATCAGATCAACCGGATGCGGACTGAGAAGGCGGTGATTGCCGGATTGGGTCTCGGCGGGCTGTTGGCGTCTGGGCTGGTCGGGACGCCGGAGGCAATGGCGGCGGAGGCTTCCAACGACGCGAGAGGACAGCTGCTGCTGATTGTGGTGGCGCCGGCGATTCTGTGGGTTCTGTATAATATCCTTCAGCCGGCGTTGAACCAGCTGAATCGGATGAGGTCGGAGTGA

Coding sequence (CDS)

ATGGCGGCAACAATGGCGACCATGGCGATCCTCAACGCCAAATGCTTCACCCCCAACAGAACCCCCCCACCACTCCTTCCCTCAAAGCCCACAACACCCCTCTCCCTCCCAGTCCCCTCACCCAAATCTTCCCTCGCTGGATCCGCCATTGCCGGAGCAATCTTCTCCACTTTGAGCTTCACCGACGCCGCCTTCGCCGCCCAACAAATCGCCGATCTAGCCGAGGGCGACAACCGTGGGTTGGCTCTGTTGCTGCCGCTTATCCCGGCTGTGGCTTGGGTTCTCTTCAATATTCTTCAGCCGGCGCTGAATCAGATCAACCGGATGCGGACTGAGAAGGCGGTGATTGCCGGATTGGGTCTCGGCGGGCTGTTGGCGTCTGGGCTGGTCGGGACGCCGGAGGCAATGGCGGCGGAGGCTTCCAACGACGCGAGAGGACAGCTGCTGCTGATTGTGGTGGCGCCGGCGATTCTGTGGGTTCTGTATAATATCCTTCAGCCGGCGTTGAACCAGCTGAATCGGATGAGGTCGGAGTGA

Protein sequence

MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPLSLPVPSPKSSLAGSAIAGAIFSTLSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

Homology

[Close]

BLAST of Cp4.1LG01g15790 vs. ExPASy Swiss-Prot
Match: O49347 (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBY PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.4e-44
Identity = 111/191 (58.12%), Postives = 138/191 (72.25%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTPNRTPPPLLPSKPTTP-LSLPV-PSPKSSLA--GSAIAGAIFS 60
           MAA MAT      KC + N +PP L     + P +SLP  P P  SLA   +A+AGA+FS
Sbjct: 1   MAAAMATA----TKCMSLNPSPPKLQNQTKSKPFISLPTPPKPNVSLAVTSTALAGAVFS 60

Query: 61  TLSFTDAAFAAQQIADL----AEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTE 120
           +LS+++ A A QQIA L    A  DNRGLALLLP++PA+AWVL+NILQPA+NQ+N+MR  
Sbjct: 61  SLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRES 120

Query: 121 KAVIAGLGL-GGLLASGLVGTP-----EAMAAEASNDARGQLLLIVVAPAILWVLYNILQ 178
           K ++ GLG+ GGL ASGL+  P      A AA AS+D+RGQLLLIVV PA+LWVLYNILQ
Sbjct: 121 KGIVVGLGIGGGLAASGLLTPPPEAYAAAEAAAASSDSRGQLLLIVVTPALLWVLYNILQ 180

[Close]

BLAST of Cp4.1LG01g15790 vs. ExPASy Swiss-Prot
Match: P80470 (Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBY PE=1 SV=2)

HSP 1 Score: 175.6 bits (444), Expect = 4.9e-43
Identity = 118/199 (59.30%), Postives = 135/199 (67.84%), Query Frame = 0


Query: 1   MAATMA-TMAILNAKCFTPNRTPPPLLPSKPTT-PLSL-PVPSPKSSL--------AGSA 60
           MAATMA TMA+LN KC T N         KPT+ P+SL P+    S L           A
Sbjct: 1   MAATMATTMAVLNTKCLTLNTNKTTSTSPKPTSKPISLSPLGLSNSKLPMGLSPIITAPA 60

Query: 61  IAGAIFSTLSFTDAAFAAQQIADLA----EGDNRGLALLLPLIPAVAWVLFNILQPALNQ 120
           IAGA+F+TL   D AFA QQ+AD+A      DNRGLALLLP+IPA+ WVLFNILQPALNQ
Sbjct: 61  IAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQ 120

Query: 121 INRMRTE-KAVIAGLGLGGLLASG-LVGTPEAMAAE----ASNDARGQLLLIVVAPAILW 179
           IN+MR E KA I GLGL GL  SG L+ TPEA AA       +D RG LLL+VV PAI W
Sbjct: 121 INKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEIARGSDNRGTLLLLVVLPAIGW 180

[Close]

BLAST of Cp4.1LG01g15790 vs. NCBI nr
Match: XP_023511769.1 (photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 328 bits (842), Expect = 5.56e-113
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPLSLPVPSPKSSLAGSAIAGAIFSTLSF 60
           MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPLSLPVPSPKSSLAGSAIAGAIFSTLSF
Sbjct: 1   MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPLSLPVPSPKSSLAGSAIAGAIFSTLSF 60

Query: 61  TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG 120
           TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG
Sbjct: 61  TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG 120

Query: 121 LGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 178
           LGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Sbjct: 121 LGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 178

[Close]

BLAST of Cp4.1LG01g15790 vs. NCBI nr
Match: XP_022956891.1 (photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 326 bits (835), Expect = 6.49e-112
Identity = 175/178 (98.31%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPLSLPVPSPKSSLAGSAIAGAIFSTLSF 60
           MAATMATMAILNAKCFTPNRTPPPLLPSKPTTP+SLP+PSPKSSLAGSAIAGAIFST SF
Sbjct: 1   MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSF 60

Query: 61  TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG 120
           TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG
Sbjct: 61  TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG 120

Query: 121 LGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 178
           LGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Sbjct: 121 LGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 178

[Close]

BLAST of Cp4.1LG01g15790 vs. NCBI nr
Match: KAG7032326.1 (Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 322 bits (824), Expect = 3.08e-110
Identity = 173/178 (97.19%), Postives = 176/178 (98.88%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPLSLPVPSPKSSLAGSAIAGAIFSTLSF 60
           MAATMATMAILNAKCFTPNRTPP LLPSKPTTP+SLP+PSPKSSLAGSAIAGAIFST SF
Sbjct: 1   MAATMATMAILNAKCFTPNRTPPSLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSF 60

Query: 61  TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG 120
           TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG
Sbjct: 61  TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG 120

Query: 121 LGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 178
           LGGLLASGL+GTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Sbjct: 121 LGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 178

[Close]

BLAST of Cp4.1LG01g15790 vs. NCBI nr
Match: XP_022998705.1 (photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 320 bits (819), Expect = 1.78e-109
Identity = 173/178 (97.19%), Postives = 175/178 (98.31%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPLSLPVPSPKSSLAGSAIAGAIFSTLSF 60
           MAATMATMAILNAKCFTPNRTP PLLPSKPT P+SLP+PSPKSSLAGSAIAGAIFST SF
Sbjct: 1   MAATMATMAILNAKCFTPNRTPLPLLPSKPTRPISLPIPSPKSSLAGSAIAGAIFSTFSF 60

Query: 61  TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG 120
           TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG
Sbjct: 61  TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG 120

Query: 121 LGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 178
           LGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Sbjct: 121 LGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 178

[Close]

BLAST of Cp4.1LG01g15790 vs. NCBI nr
Match: XP_008446112.1 (PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumis melo] >KAA0034237.1 photosystem II core complex proteins psbY [Cucumis melo var. makuwa] >TYK15683.1 photosystem II core complex proteins psbY [Cucumis melo var. makuwa])

HSP 1 Score: 289 bits (739), Expect = 2.88e-97
Identity = 162/179 (90.50%), Postives = 165/179 (92.18%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPLSLPVPSP-KSSLAGSAIAGAIFSTLS 60
           MAATMATMAILNAKCFTP    P LLPSKPT P+SLP P P K SLAG+AIAGAIFSTLS
Sbjct: 1   MAATMATMAILNAKCFTPINKTPVLLPSKPTKPISLPFPIPTKPSLAGTAIAGAIFSTLS 60

Query: 61  FTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGL 120
             DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVI GL
Sbjct: 61  SGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGL 120

Query: 121 GLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 178
           GLGGLLASGLVGTPEAMAAEASND+RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Sbjct: 121 GLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE 179

[Close]

BLAST of Cp4.1LG01g15790 vs. ExPASy TrEMBL
Match: A0A6J1GXR1 (photosystem II core complex proteins psbY, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111458441 PE=3 SV=1)

HSP 1 Score: 326 bits (835), Expect = 3.14e-112
Identity = 175/178 (98.31%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPLSLPVPSPKSSLAGSAIAGAIFSTLSF 60
           MAATMATMAILNAKCFTPNRTPPPLLPSKPTTP+SLP+PSPKSSLAGSAIAGAIFST SF
Sbjct: 1   MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSF 60

Query: 61  TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG 120
           TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG
Sbjct: 61  TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG 120

Query: 121 LGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 178
           LGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Sbjct: 121 LGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 178

[Close]

BLAST of Cp4.1LG01g15790 vs. ExPASy TrEMBL
Match: A0A6J1KD85 (photosystem II core complex proteins psbY, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111493283 PE=3 SV=1)

HSP 1 Score: 320 bits (819), Expect = 8.64e-110
Identity = 173/178 (97.19%), Postives = 175/178 (98.31%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPLSLPVPSPKSSLAGSAIAGAIFSTLSF 60
           MAATMATMAILNAKCFTPNRTP PLLPSKPT P+SLP+PSPKSSLAGSAIAGAIFST SF
Sbjct: 1   MAATMATMAILNAKCFTPNRTPLPLLPSKPTRPISLPIPSPKSSLAGSAIAGAIFSTFSF 60

Query: 61  TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG 120
           TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG
Sbjct: 61  TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG 120

Query: 121 LGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 178
           LGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Sbjct: 121 LGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 178

[Close]

BLAST of Cp4.1LG01g15790 vs. ExPASy TrEMBL
Match: A0A5A7SY80 (Photosystem II core complex proteins psbY OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001810 PE=3 SV=1)

HSP 1 Score: 289 bits (739), Expect = 1.39e-97
Identity = 162/179 (90.50%), Postives = 165/179 (92.18%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPLSLPVPSP-KSSLAGSAIAGAIFSTLS 60
           MAATMATMAILNAKCFTP    P LLPSKPT P+SLP P P K SLAG+AIAGAIFSTLS
Sbjct: 1   MAATMATMAILNAKCFTPINKTPVLLPSKPTKPISLPFPIPTKPSLAGTAIAGAIFSTLS 60

Query: 61  FTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGL 120
             DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVI GL
Sbjct: 61  SGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGL 120

Query: 121 GLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 178
           GLGGLLASGLVGTPEAMAAEASND+RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Sbjct: 121 GLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE 179

[Close]

BLAST of Cp4.1LG01g15790 vs. ExPASy TrEMBL
Match: A0A1S3BDT7 (photosystem II core complex proteins psbY, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103488936 PE=3 SV=1)

HSP 1 Score: 289 bits (739), Expect = 1.39e-97
Identity = 162/179 (90.50%), Postives = 165/179 (92.18%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPLSLPVPSP-KSSLAGSAIAGAIFSTLS 60
           MAATMATMAILNAKCFTP    P LLPSKPT P+SLP P P K SLAG+AIAGAIFSTLS
Sbjct: 1   MAATMATMAILNAKCFTPINKTPVLLPSKPTKPISLPFPIPTKPSLAGTAIAGAIFSTLS 60

Query: 61  FTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGL 120
             DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVI GL
Sbjct: 61  SGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGL 120

Query: 121 GLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 178
           GLGGLLASGLVGTPEAMAAEASND+RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Sbjct: 121 GLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE 179

[Close]

BLAST of Cp4.1LG01g15790 vs. ExPASy TrEMBL
Match: A0A0A0KTG2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G592810 PE=3 SV=1)

HSP 1 Score: 274 bits (701), Expect = 8.58e-92
Identity = 159/181 (87.85%), Postives = 165/181 (91.16%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTP-NRTPPPLLPSKPTT-PLSLPVPS-PKSSLAGSAIAGAIFST 60
           MAATMATMAILNAKCFTP N+TP  LLPSKP T P+SLP+P   K SLAG+AIAGAIFST
Sbjct: 1   MAATMATMAILNAKCFTPINKTP--LLPSKPATKPISLPLPILTKPSLAGTAIAGAIFST 60

Query: 61  LSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIA 120
           LS  DAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVI 
Sbjct: 61  LSSGDAALAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIV 120

Query: 121 GLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRS 178
           GLGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAI WVL+NILQPALNQLNRMRS
Sbjct: 121 GLGLGGLLASGLVGTPEAMAAEAGSDGRGQLLLIVVAPAIAWVLFNILQPALNQLNRMRS 179

[Close]

BLAST of Cp4.1LG01g15790 vs. TAIR 10
Match: AT1G67740.1 (photosystem II BY )

HSP 1 Score: 179.5 bits (454), Expect = 2.4e-45
Identity = 111/191 (58.12%), Postives = 138/191 (72.25%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTPNRTPPPLLPSKPTTP-LSLPV-PSPKSSLA--GSAIAGAIFS 60
           MAA MAT      KC + N +PP L     + P +SLP  P P  SLA   +A+AGA+FS
Sbjct: 1   MAAAMATA----TKCMSLNPSPPKLQNQTKSKPFISLPTPPKPNVSLAVTSTALAGAVFS 60

Query: 61  TLSFTDAAFAAQQIADL----AEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTE 120
           +LS+++ A A QQIA L    A  DNRGLALLLP++PA+AWVL+NILQPA+NQ+N+MR  
Sbjct: 61  SLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRES 120

Query: 121 KAVIAGLGL-GGLLASGLVGTP-----EAMAAEASNDARGQLLLIVVAPAILWVLYNILQ 178
           K ++ GLG+ GGL ASGL+  P      A AA AS+D+RGQLLLIVV PA+LWVLYNILQ
Sbjct: 121 KGIVVGLGIGGGLAASGLLTPPPEAYAAAEAAAASSDSRGQLLLIVVTPALLWVLYNILQ 180

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g15790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49347	3.4e-44	58.12	Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana...	[more]
P80470	4.9e-43	59.30	Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea OX...	[more]

BLAST of Cp4.1LG01g15790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023511769.1	5.56e-113	100.00	photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita pepo su...	[more]
XP_022956891.1	6.49e-112	98.31	photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita moschat...	[more]
KAG7032326.1	3.08e-110	97.19	Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita arg...	[more]
XP_022998705.1	1.78e-109	97.19	photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita maxima]	[more]
XP_008446112.1	2.88e-97	90.50	PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumi...	[more]

BLAST of Cp4.1LG01g15790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GXR1	3.14e-112	98.31	photosystem II core complex proteins psbY, chloroplastic-like OS=Cucurbita mosch...	[more]
A0A6J1KD85	8.64e-110	97.19	photosystem II core complex proteins psbY, chloroplastic-like OS=Cucurbita maxim...	[more]
A0A5A7SY80	1.39e-97	90.50	Photosystem II core complex proteins psbY OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3BDT7	1.39e-97	90.50	photosystem II core complex proteins psbY, chloroplastic-like OS=Cucumis melo OX...	[more]
A0A0A0KTG2	8.58e-92	87.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G592810 PE=3 SV=1	[more]

BLAST of Cp4.1LG01g15790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67740.1	2.4e-45	58.12	photosystem II BY	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 169..178
None	No IPR available	PANTHER	PTHR34790:SF2	SUBFAMILY NOT NAMED	coord: 1..178
IPR009388	Photosystem II PsbY	PFAM	PF06298	PsbY	coord: 143..175 e-value: 9.2E-10 score: 38.2 coord: 77..109 e-value: 1.8E-14 score: 53.3
IPR009388	Photosystem II PsbY	HAMAP	MF_00717	PSII_PsbY	coord: 77..111 score: 10.827111
IPR038760	Photosystem II PsbY, plant	PANTHER	PTHR34790	PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC	coord: 1..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g15790.1	Cp4.1LG01g15790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0030145	manganese ion binding