Cp4.1LG01g15710 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g15710
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RING-type domain-containing protein
Location	Cp4.1LG01: 9404923 .. 9405342 (-)
RNA-Seq Expression	Cp4.1LG01g15710
Synteny	Cp4.1LG01g15710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTCTCGAATTTCCCCCCTTCAGCTGAAGGAGTGTTGCTGTTACCTGTTCTTGTGATGAACACTGTAATGTCGATGGCGTTTTTGAAGAACTTGGTGAGATCTGTGATACAAATGATGAGTGCGAGTGGGAATCCTTCGAGTTCTGAGGAAGAATTCGATTGGGAAAATGGAAGAGAAAGAAGAATCTCAATTACCCAGTTCAAATCTTTGGGTCAAAGCTTCAATAATGGCGGAACAGAGAAGGGCTCTGCTTCGAGGTGTGCCATGGCAGAGTGCTGTGTTTGTCTTTGTGGGTTTGAAGCTGATGAGGAAGTTAGTGAGTTGTCTTGCAAGCACTTTTTTCATAAAGCTTGTCTTTCTAAGTGGTTTGATAATAAGCACATTACTTGCCCTCTTTGTCGTTCCATTGAATAG

mRNA sequence

ATGGGTCTCTCGAATTTCCCCCCTTCAGCTGAAGGAGTGTTGCTGTTACCTGTTCTTGTGATGAACACTGTAATGTCGATGGCGTTTTTGAAGAACTTGGTGAGATCTGTGATACAAATGATGAGTGCGAGTGGGAATCCTTCGAGTTCTGAGGAAGAATTCGATTGGGAAAATGGAAGAGAAAGAAGAATCTCAATTACCCAGTTCAAATCTTTGGGTCAAAGCTTCAATAATGGCGGAACAGAGAAGGGCTCTGCTTCGAGGTGTGCCATGGCAGAGTGCTGTGTTTGTCTTTGTGGGTTTGAAGCTGATGAGGAAGTTAGTGAGTTGTCTTGCAAGCACTTTTTTCATAAAGCTTGTCTTTCTAAGTGGTTTGATAATAAGCACATTACTTGCCCTCTTTGTCGTTCCATTGAATAG

Coding sequence (CDS)

ATGGGTCTCTCGAATTTCCCCCCTTCAGCTGAAGGAGTGTTGCTGTTACCTGTTCTTGTGATGAACACTGTAATGTCGATGGCGTTTTTGAAGAACTTGGTGAGATCTGTGATACAAATGATGAGTGCGAGTGGGAATCCTTCGAGTTCTGAGGAAGAATTCGATTGGGAAAATGGAAGAGAAAGAAGAATCTCAATTACCCAGTTCAAATCTTTGGGTCAAAGCTTCAATAATGGCGGAACAGAGAAGGGCTCTGCTTCGAGGTGTGCCATGGCAGAGTGCTGTGTTTGTCTTTGTGGGTTTGAAGCTGATGAGGAAGTTAGTGAGTTGTCTTGCAAGCACTTTTTTCATAAAGCTTGTCTTTCTAAGTGGTTTGATAATAAGCACATTACTTGCCCTCTTTGTCGTTCCATTGAATAG

Protein sequence

MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGRERRISITQFKSLGQSFNNGGTEKGSASRCAMAECCVCLCGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRSIE

Homology

[Close]

BLAST of Cp4.1LG01g15710 vs. ExPASy Swiss-Prot
Match: Q9SI09 (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.1e-17
Identity = 55/148 (37.16%), Postives = 80/148 (54.05%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 60
           MGLS+ P  +EG+L   V+++NT +S++ +K +VRS + ++  S +PSSS       +  
Sbjct: 1   MGLSSLPGPSEGMLC--VILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSE 60

Query: 61  ERRIS------ITQFKSLGQSFNNGGTEKGSASRC-----AMAECCVCLCGFEADEEVSE 120
               S      + Q +S  + F N        S C     A  EC VCL  F+ D E+++
Sbjct: 61  NSSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINK 120

Query: 121 LSCKHFFHKACLSKWFDNKHITCPLCRS 138
           L C H FHK CL KW D  +ITCPLCR+
Sbjct: 121 LKCGHLFHKTCLEKWIDYWNITCPLCRT 146

[Close]

BLAST of Cp4.1LG01g15710 vs. ExPASy Swiss-Prot
Match: Q9ZU51 (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 4.0e-08
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 90  AMAECCVCLCGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS 138
           A ++C VCL   +  EEV +L C+H FHK CL  W  + +  CPLCRS
Sbjct: 70  AASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRS 117

[Close]

BLAST of Cp4.1LG01g15710 vs. ExPASy Swiss-Prot
Match: Q93Z92 (E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana OX=3702 GN=At4g11680 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.4e-07
Identity = 24/47 (51.06%), Postives = 29/47 (61.70%), Query Frame = 0


Query: 92  AECCVCLCGFEADEEVSELSCKHFFHKACLSKWFDNKHIT--CPLCR 137
           AECC+CLC +E   E+ EL C H FH  C+ KW    HI   CPLC+
Sbjct: 336 AECCICLCEYEDGVELRELPCNHHFHCTCIDKWL---HINSRCPLCK 379

[Close]

BLAST of Cp4.1LG01g15710 vs. ExPASy Swiss-Prot
Match: Q8LDB8 (E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana OX=3702 GN=At1g63170 PE=2 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 7.5e-07
Identity = 22/45 (48.89%), Postives = 29/45 (64.44%), Query Frame = 0


Query: 92  AECCVCLCGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCR 137
           AECC+CL  +E + E+ EL C H FH  C+ KW    + TCPLC+
Sbjct: 323 AECCICLSAYEDETELRELPCGHHFHCGCVDKWL-YINATCPLCK 366

[Close]

BLAST of Cp4.1LG01g15710 vs. ExPASy Swiss-Prot
Match: Q9LN71 (E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana OX=3702 GN=At1g12760 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.3e-06
Identity = 22/45 (48.89%), Postives = 29/45 (64.44%), Query Frame = 0


Query: 92  AECCVCLCGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCR 137
           AECC+CL  +E   E+ EL C H FH +C+ KW    + TCPLC+
Sbjct: 351 AECCICLSAYEDGTELRELPCGHHFHCSCVDKWL-YINATCPLCK 394

[Close]

BLAST of Cp4.1LG01g15710 vs. NCBI nr
Match: XP_023523084.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo] >XP_023547007.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282 bits (721), Expect = 8.32e-96
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 60

Query: 61  ERRISITQFKSLGQSFNNGGTEKGSASRCAMAECCVCLCGFEADEEVSELSCKHFFHKAC 120
           ERRISITQFKSLGQSFNNGGTEKGSASRCAMAECCVCLCGFEADEEVSELSCKHFFHKAC
Sbjct: 61  ERRISITQFKSLGQSFNNGGTEKGSASRCAMAECCVCLCGFEADEEVSELSCKHFFHKAC 120

Query: 121 LSKWFDNKHITCPLCRSIE 139
           LSKWFDNKHITCPLCRSIE
Sbjct: 121 LSKWFDNKHITCPLCRSIE 139

[Close]

BLAST of Cp4.1LG01g15710 vs. NCBI nr
Match: XP_022984317.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima])

HSP 1 Score: 280 bits (716), Expect = 2.03e-94
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR
Sbjct: 43  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 102

Query: 61  ERRISITQFKSLGQSFNNGGTEKGSASRCAMAECCVCLCGFEADEEVSELSCKHFFHKAC 120
           ERRISITQFKSLGQSFNNGGTEKGSASRC MAECCVCLCGFEADEEVSELSCKHFFHKAC
Sbjct: 103 ERRISITQFKSLGQSFNNGGTEKGSASRCIMAECCVCLCGFEADEEVSELSCKHFFHKAC 162

Query: 121 LSKWFDNKHITCPLCRSIE 139
           LSKWFDNKHITCPLCRSIE
Sbjct: 163 LSKWFDNKHITCPLCRSIE 181

[Close]

BLAST of Cp4.1LG01g15710 vs. NCBI nr
Match: KAG6601543.1 (putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032315.1 putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 278 bits (711), Expect = 2.79e-94
Identity = 137/139 (98.56%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEE DWENGR
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEELDWENGR 60

Query: 61  ERRISITQFKSLGQSFNNGGTEKGSASRCAMAECCVCLCGFEADEEVSELSCKHFFHKAC 120
           ERRISITQFKSLGQSFNNGGTEKGSASRC MAECCVCLCGFEADEEVSELSCKHFFHKAC
Sbjct: 61  ERRISITQFKSLGQSFNNGGTEKGSASRCVMAECCVCLCGFEADEEVSELSCKHFFHKAC 120

Query: 121 LSKWFDNKHITCPLCRSIE 139
           LSKWFDNKHITCPLCRSIE
Sbjct: 121 LSKWFDNKHITCPLCRSIE 139

[Close]

BLAST of Cp4.1LG01g15710 vs. NCBI nr
Match: XP_022957080.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata])

HSP 1 Score: 278 bits (711), Expect = 3.49e-93
Identity = 137/139 (98.56%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEE DWENGR
Sbjct: 75  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEELDWENGR 134

Query: 61  ERRISITQFKSLGQSFNNGGTEKGSASRCAMAECCVCLCGFEADEEVSELSCKHFFHKAC 120
           ERRISITQFKSLGQSFNNGGTEKGSASRC MAECCVCLCGFEADEEVSELSCKHFFHKAC
Sbjct: 135 ERRISITQFKSLGQSFNNGGTEKGSASRCVMAECCVCLCGFEADEEVSELSCKHFFHKAC 194

Query: 121 LSKWFDNKHITCPLCRSIE 139
           LSKWFDNKHITCPLCRSIE
Sbjct: 195 LSKWFDNKHITCPLCRSIE 213

[Close]

BLAST of Cp4.1LG01g15710 vs. NCBI nr
Match: KAA0034267.1 (putative E3 ubiquitin-protein ligase XERICO [Cucumis melo var. makuwa] >TYK15653.1 putative E3 ubiquitin-protein ligase XERICO [Cucumis melo var. makuwa])

HSP 1 Score: 248 bits (634), Expect = 1.49e-82
Identity = 125/139 (89.93%), Postives = 129/139 (92.81%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 60
           MGLSNFPPSAEGVLLLPVLVM+TVMSMAFLKN VRSVIQMMSASGN SSSEEE+DWENGR
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMHTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENGR 60

Query: 61  ERRISITQFKSLGQSFNNGGTEKGSASRCAMAECCVCLCGFEADEEVSELSCKHFFHKAC 120
           ERRISITQFK+LGQSFN G TE+   SRC MAECCVCLC FEADEEVSELSCKHFFHKAC
Sbjct: 61  ERRISITQFKTLGQSFN-GETEEEFVSRCVMAECCVCLCRFEADEEVSELSCKHFFHKAC 120

Query: 121 LSKWFDNKHITCPLCRSIE 139
           LSKWFDNKH TCPLCRSIE
Sbjct: 121 LSKWFDNKHFTCPLCRSIE 138

[Close]

BLAST of Cp4.1LG01g15710 vs. ExPASy TrEMBL
Match: A0A6J1J1V9 (probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita maxima OX=3661 GN=LOC111482652 PE=4 SV=1)

HSP 1 Score: 280 bits (716), Expect = 9.81e-95
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR
Sbjct: 43  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 102

Query: 61  ERRISITQFKSLGQSFNNGGTEKGSASRCAMAECCVCLCGFEADEEVSELSCKHFFHKAC 120
           ERRISITQFKSLGQSFNNGGTEKGSASRC MAECCVCLCGFEADEEVSELSCKHFFHKAC
Sbjct: 103 ERRISITQFKSLGQSFNNGGTEKGSASRCIMAECCVCLCGFEADEEVSELSCKHFFHKAC 162

Query: 121 LSKWFDNKHITCPLCRSIE 139
           LSKWFDNKHITCPLCRSIE
Sbjct: 163 LSKWFDNKHITCPLCRSIE 181

[Close]

BLAST of Cp4.1LG01g15710 vs. ExPASy TrEMBL
Match: A0A6J1GZI7 (probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita moschata OX=3662 GN=LOC111458569 PE=4 SV=1)

HSP 1 Score: 278 bits (711), Expect = 1.69e-93
Identity = 137/139 (98.56%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEE DWENGR
Sbjct: 75  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEELDWENGR 134

Query: 61  ERRISITQFKSLGQSFNNGGTEKGSASRCAMAECCVCLCGFEADEEVSELSCKHFFHKAC 120
           ERRISITQFKSLGQSFNNGGTEKGSASRC MAECCVCLCGFEADEEVSELSCKHFFHKAC
Sbjct: 135 ERRISITQFKSLGQSFNNGGTEKGSASRCVMAECCVCLCGFEADEEVSELSCKHFFHKAC 194

Query: 121 LSKWFDNKHITCPLCRSIE 139
           LSKWFDNKHITCPLCRSIE
Sbjct: 195 LSKWFDNKHITCPLCRSIE 213

[Close]

BLAST of Cp4.1LG01g15710 vs. ExPASy TrEMBL
Match: A0A5A7SYA9 (Putative E3 ubiquitin-protein ligase XERICO OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001500 PE=4 SV=1)

HSP 1 Score: 248 bits (634), Expect = 7.23e-83
Identity = 125/139 (89.93%), Postives = 129/139 (92.81%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 60
           MGLSNFPPSAEGVLLLPVLVM+TVMSMAFLKN VRSVIQMMSASGN SSSEEE+DWENGR
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMHTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENGR 60

Query: 61  ERRISITQFKSLGQSFNNGGTEKGSASRCAMAECCVCLCGFEADEEVSELSCKHFFHKAC 120
           ERRISITQFK+LGQSFN G TE+   SRC MAECCVCLC FEADEEVSELSCKHFFHKAC
Sbjct: 61  ERRISITQFKTLGQSFN-GETEEEFVSRCVMAECCVCLCRFEADEEVSELSCKHFFHKAC 120

Query: 121 LSKWFDNKHITCPLCRSIE 139
           LSKWFDNKH TCPLCRSIE
Sbjct: 121 LSKWFDNKHFTCPLCRSIE 138

[Close]

BLAST of Cp4.1LG01g15710 vs. ExPASy TrEMBL
Match: A0A0A0KTI8 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G598060 PE=4 SV=1)

HSP 1 Score: 247 bits (631), Expect = 2.07e-82
Identity = 125/139 (89.93%), Postives = 128/139 (92.09%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 60
           MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKN VRSVIQMMSASGN SSSEEE+DWEN R
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRR 60

Query: 61  ERRISITQFKSLGQSFNNGGTEKGSASRCAMAECCVCLCGFEADEEVSELSCKHFFHKAC 120
           ERRISITQFK+LGQSFN G TE+   SRC MAECCVCLC FEADEEVSELSCKHFFHKAC
Sbjct: 61  ERRISITQFKTLGQSFN-GETEEEFVSRCVMAECCVCLCRFEADEEVSELSCKHFFHKAC 120

Query: 121 LSKWFDNKHITCPLCRSIE 139
           LSKWFDNKH TCPLCRSIE
Sbjct: 121 LSKWFDNKHFTCPLCRSIE 138

[Close]

BLAST of Cp4.1LG01g15710 vs. ExPASy TrEMBL
Match: A0A6J1DFU2 (probable E3 ubiquitin-protein ligase XERICO OS=Momordica charantia OX=3673 GN=LOC111019714 PE=4 SV=1)

HSP 1 Score: 243 bits (621), Expect = 7.42e-81
Identity = 126/141 (89.36%), Postives = 131/141 (92.91%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGN--PSSSEEEFDWEN 60
           MGLSNFPP AEGVLLLPVL+MNTVMSMAFLK+LVRSVIQMMSASG+  PSSSEEE+D EN
Sbjct: 1   MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSEN 60

Query: 61  GRERRISITQFKSLGQSFNNGGTEKGSASRCAMAECCVCLCGFEADEEVSELSCKHFFHK 120
            RERRISITQFKSL QSFN GGTE GSASRC  AECCVCLCGFEADEEVSELSCKHFFHK
Sbjct: 61  ARERRISITQFKSLRQSFN-GGTEDGSASRCIAAECCVCLCGFEADEEVSELSCKHFFHK 120

Query: 121 ACLSKWFDNKHITCPLCRSIE 139
           ACLSKWFDNKHITCPLCRSI+
Sbjct: 121 ACLSKWFDNKHITCPLCRSIQ 140

[Close]

BLAST of Cp4.1LG01g15710 vs. TAIR 10
Match: AT1G67856.1 (RING/U-box superfamily protein )

HSP 1 Score: 142.1 bits (357), Expect = 3.3e-34
Identity = 75/141 (53.19%), Postives = 104/141 (73.76%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPS-SSEEEFDWENG 60
           MG+S++P ++EGV  +P+LVMNTV+S++ +KN+VRSV+ M+S+  N + + E++ D E+ 
Sbjct: 1   MGISHYPTASEGV--MPMLVMNTVVSVSLVKNMVRSVVNMVSSETNEARNKEDDQDHEDS 60

Query: 61  -RERRISITQFKSLGQSFNNGGTEKGSASRCAMAECCVCLCGFEADEEVSEL-SCKHFFH 120
            R RRISIT F+SL ++       +GS +     +CCVCLCGF+ +EEVSEL SCKH+FH
Sbjct: 61  KRRRRISITHFESLCEN-------RGSRNEREAMDCCVCLCGFKEEEEVSELVSCKHYFH 120

Query: 121 KACLSKWFDNKHITCPLCRSI 139
            ACL KWF N H TCPLCRSI
Sbjct: 121 SACLDKWFGNNHTTCPLCRSI 132

[Close]

BLAST of Cp4.1LG01g15710 vs. TAIR 10
Match: AT1G24580.1 (RING/U-box superfamily protein )

HSP 1 Score: 125.2 bits (313), Expect = 4.2e-29
Identity = 65/119 (54.62%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 21  MNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGRERRISITQFKSLGQSFNNGG 80
           MNTV+S+  LKN+VRSV Q++++    S   ++   ++   RRISITQFKSL ++     
Sbjct: 1   MNTVVSITLLKNMVRSVFQIVASETESSMEIDDEPEDDFVTRRISITQFKSLCENIEEEE 60

Query: 81  TEKGSASRCAMAECCVCLCGFEADEEVSEL-SCKHFFHKACLSKWFDNKHITCPLCRSI 139
            EKG        ECCVCLCGF+ +EEVSEL SCKHFFH+ACL  WF N H TCPLCRSI
Sbjct: 61  EEKG-------VECCVCLCGFKEEEEVSELVSCKHFFHRACLDNWFGNNHTTCPLCRSI 112

[Close]

BLAST of Cp4.1LG01g15710 vs. TAIR 10
Match: AT2G04240.1 (RING/U-box superfamily protein )

HSP 1 Score: 88.6 bits (218), Expect = 4.3e-18
Identity = 55/148 (37.16%), Postives = 80/148 (54.05%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 60
           MGLS+ P  +EG+L   V+++NT +S++ +K +VRS + ++  S +PSSS       +  
Sbjct: 1   MGLSSLPGPSEGMLC--VILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSE 60

Query: 61  ERRIS------ITQFKSLGQSFNNGGTEKGSASRC-----AMAECCVCLCGFEADEEVSE 120
               S      + Q +S  + F N        S C     A  EC VCL  F+ D E+++
Sbjct: 61  NSSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINK 120

Query: 121 LSCKHFFHKACLSKWFDNKHITCPLCRS 138
           L C H FHK CL KW D  +ITCPLCR+
Sbjct: 121 LKCGHLFHKTCLEKWIDYWNITCPLCRT 146

[Close]

BLAST of Cp4.1LG01g15710 vs. TAIR 10
Match: AT2G04240.2 (RING/U-box superfamily protein )

HSP 1 Score: 88.6 bits (218), Expect = 4.3e-18
Identity = 55/148 (37.16%), Postives = 80/148 (54.05%), Query Frame = 0


Query: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 60
           MGLS+ P  +EG+L   V+++NT +S++ +K +VRS + ++  S +PSSS       +  
Sbjct: 1   MGLSSLPGPSEGMLC--VILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSE 60

Query: 61  ERRIS------ITQFKSLGQSFNNGGTEKGSASRC-----AMAECCVCLCGFEADEEVSE 120
               S      + Q +S  + F N        S C     A  EC VCL  F+ D E+++
Sbjct: 61  NSSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINK 120

Query: 121 LSCKHFFHKACLSKWFDNKHITCPLCRS 138
           L C H FHK CL KW D  +ITCPLCR+
Sbjct: 121 LKCGHLFHKTCLEKWIDYWNITCPLCRT 146

[Close]

BLAST of Cp4.1LG01g15710 vs. TAIR 10
Match: AT4G32600.1 (RING/U-box superfamily protein )

HSP 1 Score: 59.7 bits (143), Expect = 2.2e-09
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 80  GTEKGSASRCAMAECCVCLCGFEADEEVSELSCKHFFHKACLSKWFDNKHITCPLCRS 138
           GT+   A     A CC+CL  +  +EE+ EL C HFFHK C+ KW    + +CPLC+S
Sbjct: 349 GTDNERAISGEDAVCCICLAKYANNEELRELPCSHFFHKECVDKWL-KINASCPLCKS 405

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g15710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SI09	6.1e-17	37.16	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=X...	[more]
Q9ZU51	4.0e-08	47.92	E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 ...	[more]
Q93Z92	3.4e-07	51.06	E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana OX=3702 GN=At4g116...	[more]
Q8LDB8	7.5e-07	48.89	E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana OX=3702 GN=At1g631...	[more]
Q9LN71	1.3e-06	48.89	E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana OX=3702 GN=At1g127...	[more]

BLAST of Cp4.1LG01g15710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023523084.1	8.32e-96	100.00	probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo] >XP_023...	[more]
XP_022984317.1	2.03e-94	99.28	probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima]	[more]
KAG6601543.1	2.79e-94	98.56	putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma sub...	[more]
XP_022957080.1	3.49e-93	98.56	probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata]	[more]
KAA0034267.1	1.49e-82	89.93	putative E3 ubiquitin-protein ligase XERICO [Cucumis melo var. makuwa] >TYK15653...	[more]

BLAST of Cp4.1LG01g15710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J1V9	9.81e-95	99.28	probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1GZI7	1.69e-93	98.56	probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A5A7SYA9	7.23e-83	89.93	Putative E3 ubiquitin-protein ligase XERICO OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0KTI8	2.07e-82	89.93	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G598060 P...	[more]
A0A6J1DFU2	7.42e-81	89.36	probable E3 ubiquitin-protein ligase XERICO OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of Cp4.1LG01g15710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67856.1	3.3e-34	53.19	RING/U-box superfamily protein	[more]
AT1G24580.1	4.2e-29	54.62	RING/U-box superfamily protein	[more]
AT2G04240.1	4.3e-18	37.16	RING/U-box superfamily protein	[more]
AT2G04240.2	4.3e-18	37.16	RING/U-box superfamily protein	[more]
AT4G32600.1	2.2e-09	44.83	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 93..136 e-value: 0.0052 score: 9.6
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 94..135 e-value: 3.4E-4 score: 29.9
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 93..136 e-value: 2.8E-11 score: 43.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 94..136 score: 11.987676
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 51..139 e-value: 1.4E-15 score: 58.7
None	No IPR available	PANTHER	PTHR47258:SF3	F21J9.24-RELATED	coord: 1..138
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 93..137
IPR044249	Probable E3 ubiquitin-protein ligase XERICO-like	PANTHER	PTHR47258	FAMILY NOT NAMED	coord: 1..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g15710.1	Cp4.1LG01g15710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding