Cp4.1LG01g15550 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g15550
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	homeobox protein knotted-1-like 6
Location	Cp4.1LG01: 9233599 .. 9234767 (+)
RNA-Seq Expression	Cp4.1LG01g15550
Synteny	Cp4.1LG01g15550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGTGGGGGGCATTGCAGTACTGCTCATGGGATATCGTCGAGGGAGGGAGGAGGTTCTTATTAACCTCGAAGCTCTCGTGGGTCATTGCAGAAAGTGGATTTATGTCGCCGTTCAGTCTTGTCTATTCTGACAGTGAGTTCTTCACCCCCCCCCNGAACGACTTAACCAGACACTGCTGAAACGCAGCTTGGCTTCCCTTTTCCTTCTTCCTCTTTTGCAGTTAGCAGTCAAATCCTTGTTTTACCTTTGAAATGCCTTTTTTGTGGGGTCCTATCTTCCTGCCGTGCCCTTTCAATATCAATCTGCACTTCTTCTTTAAGACATTGAATCGTACATTTTTTCATTTCATTTACCATGGAGCTTTATTTCTTGCTTATACATGATCTGAATTACTACTGCCAAGTAAGAATATGTTTTCGATCTCGTAAACAGATGAAGGAGCTGTCTCGTCGGATGAAGAATTGAGCGGAGGAGAGATGGAAGTTGTGGAGCCGGAAACTCAAACCAAAGGCGAGAACAGGGATCTCAAGGACAAGCTTTTACGTCGATTTGGCAGTCATATTAGTAGCTTAAAATTGGAGTTCTCAAAGAAGAAGAAAAAAGGAAAATTACCAAAAGAAGCCAGGCAGACACTCCTTGAATGGTGGAACGTTCACTATAGATGGCCATATCCTACGGTATGTTTGCTTATAAGCTTACGTAAATTTTGTAATGGACATCGTATGGTCACACATAAAAGTTCACAGCATAGAAAATACGGACTGGACAATGGTTGATGCATTAATTCACTTCATCATGCCTTAGTCACGTGCTACGAATCAGGCAAAAGACGGTCTAAAGTTTTTAATTATTTCACTAAGTTGCCATCTATCCCAAATATAGTTCATTACGGAATTCATGATATTAAAAGTTGCTTAACTAAATAAAGAAATCCCTCATCGAGGAATATTTTATGATTGTTCTTGAATTAGAGGGCCAAAATCCGCTGCTTTTAATCATGCAGGAAGCCGATAAGGTTGCACTGGCAGAGAGAACAGGGCTTGACCAGAAGCAAATTAACAATTGGTTCATAAATCAGCGGAAACGCCACTGGAAGCCATCAGACAATATGCAGTTTGAGGGAATGGATGGGCTTTCTTCTAGTAGATTATTCAGAGAGGACTGA

mRNA sequence

ATGTGGTGGGGGGCATTGCAGTACTGCTCATGGGATATCGTCGAGGGAGGGAGGAGGTTCTTATTAACCTCGAAGCTCTCGTGGGTCATTGCAGAAAGTGGATTTATGTCGCCGTTCAGTCTTGTCTATTCTGACAATGAAGGAGCTGTCTCGTCGGATGAAGAATTGAGCGGAGGAGAGATGGAAGTTGTGGAGCCGGAAACTCAAACCAAAGGCGAGAACAGGGATCTCAAGGACAAGCTTTTACGTCGATTTGGCAGTCATATTAGTAGCTTAAAATTGGAGTTCTCAAAGAAGAAGAAAAAAGGAAAATTACCAAAAGAAGCCAGGCAGACACTCCTTGAATGGTGGAACGTTCACTATAGATGGCCATATCCTACGGTATGTTTGCTTATAAGCTTACAGGGCCAAAATCCGCTGCTTTTAATCATGCAGGAAGCCGATAAGGTTGCACTGGCAGAGAGAACAGGGCTTGACCAGAAGCAAATTAACAATTGGTTCATAAATCAGCGGAAACGCCACTGGAAGCCATCAGACAATATGCAGTTTGAGGGAATGGATGGGCTTTCTTCTAGTAGATTATTCAGAGAGGACTGA

Coding sequence (CDS)

ATGTGGTGGGGGGCATTGCAGTACTGCTCATGGGATATCGTCGAGGGAGGGAGGAGGTTCTTATTAACCTCGAAGCTCTCGTGGGTCATTGCAGAAAGTGGATTTATGTCGCCGTTCAGTCTTGTCTATTCTGACAATGAAGGAGCTGTCTCGTCGGATGAAGAATTGAGCGGAGGAGAGATGGAAGTTGTGGAGCCGGAAACTCAAACCAAAGGCGAGAACAGGGATCTCAAGGACAAGCTTTTACGTCGATTTGGCAGTCATATTAGTAGCTTAAAATTGGAGTTCTCAAAGAAGAAGAAAAAAGGAAAATTACCAAAAGAAGCCAGGCAGACACTCCTTGAATGGTGGAACGTTCACTATAGATGGCCATATCCTACGGTATGTTTGCTTATAAGCTTACAGGGCCAAAATCCGCTGCTTTTAATCATGCAGGAAGCCGATAAGGTTGCACTGGCAGAGAGAACAGGGCTTGACCAGAAGCAAATTAACAATTGGTTCATAAATCAGCGGAAACGCCACTGGAAGCCATCAGACAATATGCAGTTTGAGGGAATGGATGGGCTTTCTTCTAGTAGATTATTCAGAGAGGACTGA

Protein sequence

MWWGALQYCSWDIVEGGRRFLLTSKLSWVIAESGFMSPFSLVYSDNEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKKKKGKLPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGLDQKQINNWFINQRKRHWKPSDNMQFEGMDGLSSSRLFRED

Homology

[Close]

BLAST of Cp4.1LG01g15550 vs. ExPASy Swiss-Prot
Match: Q84JS6 (Homeobox protein knotted-1-like 6 OS=Arabidopsis thaliana OX=3702 GN=KNAT6 PE=1 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.4e-46
Identity = 97/152 (63.82%), Postives = 113/152 (74.34%), Query Frame = 0


Query: 47  EGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKKKKGKLP 106
           +G +SSDEELSGG+ EV E   Q + E+RDLKD+LLR+FGS IS+LKLEFSKKKKKGKLP
Sbjct: 196 DGVISSDEELSGGDHEVAEDGRQ-RCEDRDLKDRLLRKFGSRISTLKLEFSKKKKKGKLP 255

Query: 107 KEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGLDQKQINNW 166
           +EARQ LL+WWN+HY+WPYPT                  E DK+ALA+ TGLDQKQINNW
Sbjct: 256 REARQALLDWWNLHYKWPYPT------------------EGDKIALADATGLDQKQINNW 315

Query: 167 FINQRKRHWKPSDNMQFEGMDGLSSSRLFRED 199
           FINQRKRHWKPS+NM F  MD  SS   F E+
Sbjct: 316 FINQRKRHWKPSENMPFAMMDD-SSGSFFTEE 327

[Close]

BLAST of Cp4.1LG01g15550 vs. ExPASy Swiss-Prot
Match: P46640 (Homeobox protein knotted-1-like 2 OS=Arabidopsis thaliana OX=3702 GN=KNAT2 PE=1 SV=3)

HSP 1 Score: 182.2 bits (461), Expect = 5.8e-45
Identity = 95/160 (59.38%), Postives = 114/160 (71.25%), Query Frame = 0


Query: 38  PFSLVYSDNEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFS 97
           P S     ++GAVSSDEEL   + ++   ++Q +  +RDLKD+LLR+FGSHISSLKLEFS
Sbjct: 171 PASATALSDDGAVSSDEELREDD-DIAADDSQQRSNDRDLKDQLLRKFGSHISSLKLEFS 230

Query: 98  KKKKKGKLPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTG 157
           KKKKKGKLP+EARQ LL+WWNVH +WPYPT                  E DK++LAE TG
Sbjct: 231 KKKKKGKLPREARQALLDWWNVHNKWPYPT------------------EGDKISLAEETG 290

Query: 158 LDQKQINNWFINQRKRHWKPSDNMQFEGMDGLSSSRLFRE 198
           LDQKQINNWFINQRKRHWKPS+NM F+ MD  S+   F E
Sbjct: 291 LDQKQINNWFINQRKRHWKPSENMPFDMMDD-SNETFFTE 310

[Close]

BLAST of Cp4.1LG01g15550 vs. ExPASy Swiss-Prot
Match: O04134 (Homeobox protein knotted-1-like 1 OS=Malus domestica OX=3750 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.6e-40
Identity = 84/142 (59.15%), Postives = 102/142 (71.83%), Query Frame = 0


Query: 48  GAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKKKKGKLPK 107
           G+   ++E SGGE EV  PE   + E+R+LK+ LLR++  ++SSLK E SKKKKKGKLPK
Sbjct: 254 GSSEDEQENSGGETEV--PEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPK 313

Query: 108 EARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGLDQKQINNWF 167
           EARQ LL WW +HY+WPYP+                  E++KVALAE TGLDQKQINNWF
Sbjct: 314 EARQKLLSWWELHYKWPYPS------------------ESEKVALAESTGLDQKQINNWF 373

Query: 168 INQRKRHWKPSDNMQFEGMDGL 190
           INQRKRHWKPS++MQF  MDGL
Sbjct: 374 INQRKRHWKPSEDMQFMVMDGL 375

[Close]

BLAST of Cp4.1LG01g15550 vs. ExPASy Swiss-Prot
Match: O04135 (Homeobox protein knotted-1-like 2 OS=Malus domestica OX=3750 PE=2 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 9.6e-40
Identity = 87/145 (60.00%), Postives = 104/145 (71.72%), Query Frame = 0


Query: 47  EGAVSSDEEL--SGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKKKKGK 106
           EG  SS+EE   SGGE EV  PE   + E+R+LK+ LLR++  ++SSLK E SKKKKKGK
Sbjct: 250 EGIGSSEEEQENSGGETEV--PEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGK 309

Query: 107 LPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGLDQKQIN 166
           LPK+ARQ LL WW +HY+WPYP+                  E++KVALAE TGLDQKQIN
Sbjct: 310 LPKDARQKLLSWWELHYKWPYPS------------------ESEKVALAESTGLDQKQIN 369

Query: 167 NWFINQRKRHWKPSDNMQFEGMDGL 190
           NWFINQRKRHWKPS++MQF  MDGL
Sbjct: 370 NWFINQRKRHWKPSEDMQFMVMDGL 374

[Close]

BLAST of Cp4.1LG01g15550 vs. ExPASy Swiss-Prot
Match: P46639 (Homeobox protein knotted-1-like 1 OS=Arabidopsis thaliana OX=3702 GN=KNAT1 PE=1 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.6e-39
Identity = 89/149 (59.73%), Postives = 106/149 (71.14%), Query Frame = 0


Query: 44  SDNEGAVSSDEEL---SGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKK 103
           SDN G  SSDEE    SGGE E+  PE   + E+R+LK+ LL+++  ++SSLK E SKKK
Sbjct: 248 SDNMG--SSDEEQENNSGGETEL--PEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKK 307

Query: 104 KKGKLPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGLDQ 163
           KKGKLPKEARQ LL WW +HY+WPYP+                  E++KVALAE TGLDQ
Sbjct: 308 KKGKLPKEARQKLLTWWELHYKWPYPS------------------ESEKVALAESTGLDQ 367

Query: 164 KQINNWFINQRKRHWKPSDNMQFEGMDGL 190
           KQINNWFINQRKRHWKPS++MQF  MDGL
Sbjct: 368 KQINNWFINQRKRHWKPSEDMQFMVMDGL 374

[Close]

BLAST of Cp4.1LG01g15550 vs. NCBI nr
Match: KAG7032296.1 (Homeobox protein knotted-1-like 6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 342 bits (878), Expect = 3.08e-115
Identity = 172/195 (88.21%), Postives = 173/195 (88.72%), Query Frame = 0


Query: 4   GALQYCSWDIVEGGRRFLLTSKLSWVIAESGFMSPFSLVYSDNEGAVSSDEELSGGEMEV 63
           G  +YCSWDIVE GRRFLLTSKLSWVIAESGFMSPFSLVYSDNEGAVSSDEELSGGEMEV
Sbjct: 195 GKSKYCSWDIVERGRRFLLTSKLSWVIAESGFMSPFSLVYSDNEGAVSSDEELSGGEMEV 254

Query: 64  VEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKKKKGKLPKEARQTLLEWWNVHYRW 123
           VEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKKKKGKLPKEARQTLLEWWNVHYRW
Sbjct: 255 VEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKKKKGKLPKEARQTLLEWWNVHYRW 314

Query: 124 PYPTVCLLISLQGQNPLLLIMQEADKVALAERTGLDQKQINNWFINQRKRHWKPSDNMQF 183
           PYPT                  EADKVALAERTGLDQKQINNWFINQRKRHWKPSDNMQF
Sbjct: 315 PYPT------------------EADKVALAERTGLDQKQINNWFINQRKRHWKPSDNMQF 371

Query: 184 EGMDGLSSSRLFRED 198
           EGMDGLSS RLFRED
Sbjct: 375 EGMDGLSSGRLFRED 371

[Close]

BLAST of Cp4.1LG01g15550 vs. NCBI nr
Match: XP_023540871.1 (homeobox protein knotted-1-like 6 [Cucurbita pepo subsp. pepo] >XP_023540877.1 homeobox protein knotted-1-like 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265 bits (677), Expect = 2.09e-85
Identity = 138/160 (86.25%), Postives = 139/160 (86.88%), Query Frame = 0


Query: 39  FSLVYSDNEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSK 98
           FS  +SD EGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSK
Sbjct: 184 FSRSHSD-EGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSK 243

Query: 99  KKKKGKLPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGL 158
           KKKKGKLPKEARQTLLEWWNVHYRWPYPT                  EADKVALAERTGL
Sbjct: 244 KKKKGKLPKEARQTLLEWWNVHYRWPYPT------------------EADKVALAERTGL 303

Query: 159 DQKQINNWFINQRKRHWKPSDNMQFEGMDGLSSSRLFRED 198
           DQKQINNWFINQRKRHWKPSDNMQFEGMDGLSSSRLFRED
Sbjct: 304 DQKQINNWFINQRKRHWKPSDNMQFEGMDGLSSSRLFRED 324

[Close]

BLAST of Cp4.1LG01g15550 vs. NCBI nr
Match: XP_022956903.1 (homeobox protein knotted-1-like 6 [Cucurbita moschata])

HSP 1 Score: 263 bits (673), Expect = 8.44e-85
Identity = 137/160 (85.62%), Postives = 138/160 (86.25%), Query Frame = 0


Query: 39  FSLVYSDNEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSK 98
           FS  +SD EGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSK
Sbjct: 184 FSRSHSD-EGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSK 243

Query: 99  KKKKGKLPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGL 158
           KKKKGKLPKEARQTLLEWWNVHYRWPYPT                  EADKVALAERTGL
Sbjct: 244 KKKKGKLPKEARQTLLEWWNVHYRWPYPT------------------EADKVALAERTGL 303

Query: 159 DQKQINNWFINQRKRHWKPSDNMQFEGMDGLSSSRLFRED 198
           DQKQINNWFINQRKRHWKPSDNMQFEGMDGLSS RLFRED
Sbjct: 304 DQKQINNWFINQRKRHWKPSDNMQFEGMDGLSSGRLFRED 324

[Close]

BLAST of Cp4.1LG01g15550 vs. NCBI nr
Match: KAG6601516.1 (Homeobox protein knotted-1-like 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 263 bits (673), Expect = 8.44e-85
Identity = 137/160 (85.62%), Postives = 138/160 (86.25%), Query Frame = 0


Query: 39  FSLVYSDNEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSK 98
           FS  +SD EGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSK
Sbjct: 184 FSRSHSD-EGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSK 243

Query: 99  KKKKGKLPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGL 158
           KKKKGKLPKEARQTLLEWWNVHYRWPYPT                  EADKVALAERTGL
Sbjct: 244 KKKKGKLPKEARQTLLEWWNVHYRWPYPT------------------EADKVALAERTGL 303

Query: 159 DQKQINNWFINQRKRHWKPSDNMQFEGMDGLSSSRLFRED 198
           DQKQINNWFINQRKRHWKPSDNMQFEGMDGLSS RLFRED
Sbjct: 304 DQKQINNWFINQRKRHWKPSDNMQFEGMDGLSSGRLFRED 324

[Close]

BLAST of Cp4.1LG01g15550 vs. NCBI nr
Match: XP_022994780.1 (homeobox protein knotted-1-like 6 [Cucurbita maxima] >XP_022994788.1 homeobox protein knotted-1-like 6 [Cucurbita maxima])

HSP 1 Score: 262 bits (669), Expect = 3.41e-84
Identity = 136/160 (85.00%), Postives = 138/160 (86.25%), Query Frame = 0


Query: 39  FSLVYSDNEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSK 98
           FS  +SD EGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSK
Sbjct: 184 FSRSHSD-EGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSK 243

Query: 99  KKKKGKLPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGL 158
           KKKKGKLPKEARQTLLEWWNVHYRWPYPT                  EADKVALAERTGL
Sbjct: 244 KKKKGKLPKEARQTLLEWWNVHYRWPYPT------------------EADKVALAERTGL 303

Query: 159 DQKQINNWFINQRKRHWKPSDNMQFEGMDGLSSSRLFRED 198
           DQKQINNWFINQRKRHWKPS+NMQFEGMDGLSS RLFRED
Sbjct: 304 DQKQINNWFINQRKRHWKPSENMQFEGMDGLSSGRLFRED 324

[Close]

BLAST of Cp4.1LG01g15550 vs. ExPASy TrEMBL
Match: A0A6J1GYJ7 (homeobox protein knotted-1-like 6 OS=Cucurbita moschata OX=3662 GN=LOC111458449 PE=3 SV=1)

HSP 1 Score: 263 bits (673), Expect = 4.09e-85
Identity = 137/160 (85.62%), Postives = 138/160 (86.25%), Query Frame = 0


Query: 39  FSLVYSDNEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSK 98
           FS  +SD EGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSK
Sbjct: 184 FSRSHSD-EGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSK 243

Query: 99  KKKKGKLPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGL 158
           KKKKGKLPKEARQTLLEWWNVHYRWPYPT                  EADKVALAERTGL
Sbjct: 244 KKKKGKLPKEARQTLLEWWNVHYRWPYPT------------------EADKVALAERTGL 303

Query: 159 DQKQINNWFINQRKRHWKPSDNMQFEGMDGLSSSRLFRED 198
           DQKQINNWFINQRKRHWKPSDNMQFEGMDGLSS RLFRED
Sbjct: 304 DQKQINNWFINQRKRHWKPSDNMQFEGMDGLSSGRLFRED 324

[Close]

BLAST of Cp4.1LG01g15550 vs. ExPASy TrEMBL
Match: A0A6J1K638 (homeobox protein knotted-1-like 6 OS=Cucurbita maxima OX=3661 GN=LOC111490404 PE=3 SV=1)

HSP 1 Score: 262 bits (669), Expect = 1.65e-84
Identity = 136/160 (85.00%), Postives = 138/160 (86.25%), Query Frame = 0


Query: 39  FSLVYSDNEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSK 98
           FS  +SD EGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSK
Sbjct: 184 FSRSHSD-EGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSK 243

Query: 99  KKKKGKLPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGL 158
           KKKKGKLPKEARQTLLEWWNVHYRWPYPT                  EADKVALAERTGL
Sbjct: 244 KKKKGKLPKEARQTLLEWWNVHYRWPYPT------------------EADKVALAERTGL 303

Query: 159 DQKQINNWFINQRKRHWKPSDNMQFEGMDGLSSSRLFRED 198
           DQKQINNWFINQRKRHWKPS+NMQFEGMDGLSS RLFRED
Sbjct: 304 DQKQINNWFINQRKRHWKPSENMQFEGMDGLSSGRLFRED 324

[Close]

BLAST of Cp4.1LG01g15550 vs. ExPASy TrEMBL
Match: A0A0A0KVK5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G600390 PE=3 SV=1)

HSP 1 Score: 249 bits (636), Expect = 1.64e-79
Identity = 129/160 (80.62%), Postives = 133/160 (83.12%), Query Frame = 0


Query: 39  FSLVYSDNEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSK 98
           FS   SD +GAVSSDEELSGGEMEVVE E QTKGENRDLKDKLLRRFGSHIS+LKLEFSK
Sbjct: 184 FSRSLSD-DGAVSSDEELSGGEMEVVEAEAQTKGENRDLKDKLLRRFGSHISTLKLEFSK 243

Query: 99  KKKKGKLPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGL 158
           KKKKGKLPKEARQTL EWWNVHY+WPYPT                  EADKVALAERTGL
Sbjct: 244 KKKKGKLPKEARQTLFEWWNVHYKWPYPT------------------EADKVALAERTGL 303

Query: 159 DQKQINNWFINQRKRHWKPSDNMQFEGMDGLSSSRLFRED 198
           DQKQINNWFINQRKRHWKPS+NMQFEGMDGLSS R FRED
Sbjct: 304 DQKQINNWFINQRKRHWKPSENMQFEGMDGLSSGRFFRED 324

[Close]

BLAST of Cp4.1LG01g15550 vs. ExPASy TrEMBL
Match: A0A6J1E3I1 (homeobox protein knotted-1-like 4 OS=Momordica charantia OX=3673 GN=LOC111025713 PE=3 SV=1)

HSP 1 Score: 239 bits (610), Expect = 5.22e-78
Identity = 121/153 (79.08%), Postives = 127/153 (83.01%), Query Frame = 0


Query: 46  NEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKKKKGKL 105
           +EGAVSSDE+LSGGEME VE E QTKGENRDLKDKLLRRFGSHIS+LKLEFSKKKKKGKL
Sbjct: 17  DEGAVSSDEDLSGGEMEAVEAEPQTKGENRDLKDKLLRRFGSHISTLKLEFSKKKKKGKL 76

Query: 106 PKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGLDQKQINN 165
           PKEARQ L EWW+VHY+WPYPT                  EADKVALAERTGLDQKQINN
Sbjct: 77  PKEARQILFEWWSVHYKWPYPT------------------EADKVALAERTGLDQKQINN 136

Query: 166 WFINQRKRHWKPSDNMQFEGMDGLSSSRLFRED 198
           WFINQRKRHWKPS+NMQFE MDGLSS R FRED
Sbjct: 137 WFINQRKRHWKPSENMQFETMDGLSSGRFFRED 151

[Close]

BLAST of Cp4.1LG01g15550 vs. ExPASy TrEMBL
Match: A0A5D3CW74 (Homeobox protein knotted-1-like 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001170 PE=3 SV=1)

HSP 1 Score: 244 bits (624), Expect = 1.11e-77
Identity = 129/161 (80.12%), Postives = 133/161 (82.61%), Query Frame = 0


Query: 39  FSLVYSDNEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSK 98
           FS   SD +GAVSSDEELSGGEMEVVE E QTKGENRDLKDKLLRRFGSHIS+LKLEFSK
Sbjct: 184 FSRSLSD-DGAVSSDEELSGGEMEVVEAEAQTKGENRDLKDKLLRRFGSHISTLKLEFSK 243

Query: 99  KKKKGKLPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGL 158
           KKKKGKLPKEARQTL EWWNVHY+WPYPT                  EADKVALAERTGL
Sbjct: 244 KKKKGKLPKEARQTLFEWWNVHYKWPYPT------------------EADKVALAERTGL 303

Query: 159 DQKQINNWFINQRKRHWKPSDNMQFEGMD-GLSSSRLFRED 198
           DQKQINNWFINQRKRHWKPS+NMQFEGMD GLSS R FRED
Sbjct: 304 DQKQINNWFINQRKRHWKPSENMQFEGMDNGLSSGRFFRED 325

[Close]

BLAST of Cp4.1LG01g15550 vs. TAIR 10
Match: AT1G23380.2 (KNOTTED1-like homeobox gene 6 )

HSP 1 Score: 186.8 bits (473), Expect = 1.7e-47
Identity = 97/152 (63.82%), Postives = 113/152 (74.34%), Query Frame = 0


Query: 47  EGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKKKKGKLP 106
           +G +SSDEELSGG+ EV E   Q + E+RDLKD+LLR+FGS IS+LKLEFSKKKKKGKLP
Sbjct: 198 DGVISSDEELSGGDHEVAEDGRQ-RCEDRDLKDRLLRKFGSRISTLKLEFSKKKKKGKLP 257

Query: 107 KEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGLDQKQINNW 166
           +EARQ LL+WWN+HY+WPYPT                  E DK+ALA+ TGLDQKQINNW
Sbjct: 258 REARQALLDWWNLHYKWPYPT------------------EGDKIALADATGLDQKQINNW 317

Query: 167 FINQRKRHWKPSDNMQFEGMDGLSSSRLFRED 199
           FINQRKRHWKPS+NM F  MD  SS   F E+
Sbjct: 318 FINQRKRHWKPSENMPFAMMDD-SSGSFFTEE 329

[Close]

BLAST of Cp4.1LG01g15550 vs. TAIR 10
Match: AT1G23380.1 (KNOTTED1-like homeobox gene 6 )

HSP 1 Score: 186.8 bits (473), Expect = 1.7e-47
Identity = 97/152 (63.82%), Postives = 113/152 (74.34%), Query Frame = 0


Query: 47  EGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKKKKGKLP 106
           +G +SSDEELSGG+ EV E   Q + E+RDLKD+LLR+FGS IS+LKLEFSKKKKKGKLP
Sbjct: 196 DGVISSDEELSGGDHEVAEDGRQ-RCEDRDLKDRLLRKFGSRISTLKLEFSKKKKKGKLP 255

Query: 107 KEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGLDQKQINNW 166
           +EARQ LL+WWN+HY+WPYPT                  E DK+ALA+ TGLDQKQINNW
Sbjct: 256 REARQALLDWWNLHYKWPYPT------------------EGDKIALADATGLDQKQINNW 315

Query: 167 FINQRKRHWKPSDNMQFEGMDGLSSSRLFRED 199
           FINQRKRHWKPS+NM F  MD  SS   F E+
Sbjct: 316 FINQRKRHWKPSENMPFAMMDD-SSGSFFTEE 327

[Close]

BLAST of Cp4.1LG01g15550 vs. TAIR 10
Match: AT1G70510.1 (KNOTTED-like from Arabidopsis thaliana 2 )

HSP 1 Score: 182.2 bits (461), Expect = 4.1e-46
Identity = 95/160 (59.38%), Postives = 114/160 (71.25%), Query Frame = 0


Query: 38  PFSLVYSDNEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFS 97
           P S     ++GAVSSDEEL   + ++   ++Q +  +RDLKD+LLR+FGSHISSLKLEFS
Sbjct: 171 PASATALSDDGAVSSDEELREDD-DIAADDSQQRSNDRDLKDQLLRKFGSHISSLKLEFS 230

Query: 98  KKKKKGKLPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTG 157
           KKKKKGKLP+EARQ LL+WWNVH +WPYPT                  E DK++LAE TG
Sbjct: 231 KKKKKGKLPREARQALLDWWNVHNKWPYPT------------------EGDKISLAEETG 290

Query: 158 LDQKQINNWFINQRKRHWKPSDNMQFEGMDGLSSSRLFRE 198
           LDQKQINNWFINQRKRHWKPS+NM F+ MD  S+   F E
Sbjct: 291 LDQKQINNWFINQRKRHWKPSENMPFDMMDD-SNETFFTE 310

[Close]

BLAST of Cp4.1LG01g15550 vs. TAIR 10
Match: AT4G08150.1 (KNOTTED-like from Arabidopsis thaliana )

HSP 1 Score: 164.1 bits (414), Expect = 1.2e-40
Identity = 89/149 (59.73%), Postives = 106/149 (71.14%), Query Frame = 0


Query: 44  SDNEGAVSSDEEL---SGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKK 103
           SDN G  SSDEE    SGGE E+  PE   + E+R+LK+ LL+++  ++SSLK E SKKK
Sbjct: 248 SDNMG--SSDEEQENNSGGETEL--PEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKK 307

Query: 104 KKGKLPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGLDQ 163
           KKGKLPKEARQ LL WW +HY+WPYP+                  E++KVALAE TGLDQ
Sbjct: 308 KKGKLPKEARQKLLTWWELHYKWPYPS------------------ESEKVALAESTGLDQ 367

Query: 164 KQINNWFINQRKRHWKPSDNMQFEGMDGL 190
           KQINNWFINQRKRHWKPS++MQF  MDGL
Sbjct: 368 KQINNWFINQRKRHWKPSEDMQFMVMDGL 374

[Close]

BLAST of Cp4.1LG01g15550 vs. TAIR 10
Match: AT1G62360.1 (KNOX/ELK homeobox transcription factor )

HSP 1 Score: 146.4 bits (368), Expect = 2.5e-35
Identity = 78/154 (50.65%), Postives = 99/154 (64.29%), Query Frame = 0


Query: 45  DNEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKKKKGK 104
           D     SS+EE+     E V+P+     E+R+LK +LLR++  ++ SLK EF KK+KKGK
Sbjct: 236 DRNNNGSSEEEVDMNN-EFVDPQ----AEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGK 295

Query: 105 LPKEARQTLLEWWNVHYRWPYPTVCLLISLQGQNPLLLIMQEADKVALAERTGLDQKQIN 164
           LPKEARQ LL+WW+ HY+WPYP+                  E  K+ALAE TGLDQKQIN
Sbjct: 296 LPKEARQQLLDWWSRHYKWPYPS------------------EQQKLALAESTGLDQKQIN 355

Query: 165 NWFINQRKRHWKPSDNMQFEGMDGLSSSRLFRED 199
           NWFINQRKRHWKPS++MQF  MD       F ++
Sbjct: 356 NWFINQRKRHWKPSEDMQFVVMDATHPHHYFMDN 366

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g15550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84JS6	2.4e-46	63.82	Homeobox protein knotted-1-like 6 OS=Arabidopsis thaliana OX=3702 GN=KNAT6 PE=1 ...	[more]
P46640	5.8e-45	59.38	Homeobox protein knotted-1-like 2 OS=Arabidopsis thaliana OX=3702 GN=KNAT2 PE=1 ...	[more]
O04134	5.6e-40	59.15	Homeobox protein knotted-1-like 1 OS=Malus domestica OX=3750 PE=2 SV=1	[more]
O04135	9.6e-40	60.00	Homeobox protein knotted-1-like 2 OS=Malus domestica OX=3750 PE=2 SV=1	[more]
P46639	1.6e-39	59.73	Homeobox protein knotted-1-like 1 OS=Arabidopsis thaliana OX=3702 GN=KNAT1 PE=1 ...	[more]

BLAST of Cp4.1LG01g15550 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032296.1	3.08e-115	88.21	Homeobox protein knotted-1-like 6 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023540871.1	2.09e-85	86.25	homeobox protein knotted-1-like 6 [Cucurbita pepo subsp. pepo] >XP_023540877.1 h...	[more]
XP_022956903.1	8.44e-85	85.63	homeobox protein knotted-1-like 6 [Cucurbita moschata]	[more]
KAG6601516.1	8.44e-85	85.63	Homeobox protein knotted-1-like 6, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022994780.1	3.41e-84	85.00	homeobox protein knotted-1-like 6 [Cucurbita maxima] >XP_022994788.1 homeobox pr...	[more]

BLAST of Cp4.1LG01g15550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GYJ7	4.09e-85	85.63	homeobox protein knotted-1-like 6 OS=Cucurbita moschata OX=3662 GN=LOC111458449 ...	[more]
A0A6J1K638	1.65e-84	85.00	homeobox protein knotted-1-like 6 OS=Cucurbita maxima OX=3661 GN=LOC111490404 PE...	[more]
A0A0A0KVK5	1.64e-79	80.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G600390 PE=3 SV=1	[more]
A0A6J1E3I1	5.22e-78	79.08	homeobox protein knotted-1-like 4 OS=Momordica charantia OX=3673 GN=LOC111025713...	[more]
A0A5D3CW74	1.11e-77	80.12	Homeobox protein knotted-1-like 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cp4.1LG01g15550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23380.2	1.7e-47	63.82	KNOTTED1-like homeobox gene 6	[more]
AT1G23380.1	1.7e-47	63.82	KNOTTED1-like homeobox gene 6	[more]
AT1G70510.1	4.1e-46	59.38	KNOTTED-like from Arabidopsis thaliana 2	[more]
AT4G08150.1	1.2e-40	59.73	KNOTTED-like from Arabidopsis thaliana	[more]
AT1G62360.1	2.5e-35	50.65	KNOX/ELK homeobox transcription factor	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 98..181 e-value: 2.5E-4 score: 29.7
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 148..177 score: 9.571846
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 108..178 e-value: 4.65758E-8 score: 46.0825
IPR005539	ELK domain	SMART	SM01188	ELK_2	coord: 76..97 e-value: 5.1E-5 score: 32.7
IPR005539	ELK domain	PFAM	PF03789	ELK	coord: 76..97 e-value: 7.1E-8 score: 32.3
IPR005539	ELK domain	PROSITE	PS51213	ELK	coord: 76..96 score: 9.480852
None	No IPR available	GENE3D	1.10.10.60		coord: 94..186 e-value: 2.4E-25 score: 89.9
None	No IPR available	PANTHER	PTHR11850	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	coord: 35..133
None	No IPR available	PANTHER	PTHR11850:SF305	HOMEOBOX PROTEIN KNOTTED-1-LIKE 2	coord: 146..196 coord: 35..133
None	No IPR available	PANTHER	PTHR11850	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	coord: 146..196
IPR008422	Homeobox KN domain	PFAM	PF05920	Homeobox_KN	coord: 146..173 e-value: 1.6E-10 score: 40.7
IPR017970	Homeobox, conserved site	PROSITE	PS00027	HOMEOBOX_1	coord: 152..175
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 97..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g15550.1	Cp4.1LG01g15550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding