Cp4.1LG01g15360 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g15360
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG01: 9184563 .. 9187641 (-)
RNA-Seq ExpressionCp4.1LG01g15360
SyntenyCp4.1LG01g15360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGACGCCAATCTGCGACTTCAAAGATCAATGACGTGTTCGATGTTTATTGGAAGTTAATTGACTCTCCTGCGGTACATCAAAAGGGTAGTTTCGTACTTCAACCTGCCCTCGCCTTTCGGTTTATATACAGGGCCCGGGTTGGAATTTCATCTTCCCACCGTTCTTTTTTCTGTCTGTCGTAGATTCTCGGTGGTGCTCGTTGAAGGTAATTTCTTGTTTCCGAATTTCGTTCTCCTTTTCTGTCCCTCTGTGATTTTGTAGTCTTTCTGATATTGTGGTTCTTGATTTTCTGATGTCCATTGTTTCTTTTCAATTTATAACACATAATACTTTGTTTTCTAATACGAATTAGGCGCCTCTTTTGATTAGTACCGTCATTTATTGTTCCGATCTGCTTCTTTGTCGATTTTTTGTGGTTTAATTTTTTATTGGATGCTTGAATTTCTTGGATGAGTTTCATATGAGGTCACCTTCCTGGTCTCAAATCGATCTGAAGTTGCGATGTGTATACCTTCAGATCCCTTCGAGTGAGCGTGAGGGATGTAATTTTATGGAATTGATGATTCTCAGCTGCTTCATTTTTACGTTCCATTTTATTGTATGGTACTTCGAATTATCTAGATTTGTATATATGTATTTTGTTGATTTTCATTTCCGGCATCGCTATTTTCTCCCGATCTTTGTCGGCATGGTTATCGATTTATCTGATATATTCTGATGGCGTTGGAATCACGTTGGGATTTTTTGGCAGAGACAGAATGGGGCTTACGTTCACAAAGCTTTTCAGTCGGCTTTTTGCCAAGAAGGAAATGCGAATTCTGATGGTTGGTCTTGATGCGGCTGGTAAGACGACTATCCTCTACAAGCTCAAGCTTGGCGAGATCGTGACAACAATCCCTACCATCGGTGAGTTTTCTCTTCCATTTCCTTTCTAGATATAAGCGGAGTTATTACATGATCTATCTTCGATCTATGTGCCTGTGTGTGTGTGTATATATAGATTGATTCGTTTATAATATGTTATTTAGGAAAGTAAGCTCACGACATCTCTCATCTCTGCATTTTATATGATTTATTACTAGGAGTACACCATGGCAATACTCCTCCATGCTGGGCTCGCAATTTTCTTCTGCTCATTTATATACTACATTCGTTTGTCAACCATATTAAATATTGAACTTGTAATATTTTTTCATCTGGATATATGTTTACATAAAACAAATATATAGTCAATGCTGAAGTAAAGTGTCAATCACTAGATTATCACCTTGGTCAAAGGAGGAAGGAATATTTAGATCTCTCATCACTGCCGTTCATATTCATATGGTATTCGACTATACCATGTTTTTGTGCATTTTTCATGTTGGTTTCACAATTTCCTTCTGCTTTAACATTTGGATGTTTGTTAACTCTATGATTTGAAATATTAAACCGCCTACATCTTATCCAGTTGATTATCGATACGTAGAAAGAAAAACAGTACAAAGAAAGTTTGCTTGAAGAAGTCAACTAGCTGATTGTCACCTTGACTGAAATTTCTCTTGGCATAATCTATTTTTTAGCACTTGCTTTGCCGAAGATCATAATTTAGCCTATGTCCTTTACTTGCAGGGTTTAATGTTGAGACTGTCGAATACAAAAACATCAGCTTCACTGTCTGGGATGTTGGGGGTCAAGACAAGGTTTGAACTTCTGTTGTCTTGATTTCTCTCCTGTCTGAGTTGACATTGTGTTCATTAAAATCTTACCCTGCTAGAATGCAGGTCATTTGTTCCTTATTTCTAAATGTGTCATTTATATACTGTTTCATTAAATTGTGTTCTTAAATGGTTGTCCAACAGATTCGTCCCTTGTGGAGGCACTACTTCCAGAATACACAGGGTCTCATATTTGTTGTTGATAGCAATGACAGAGATCGAGTTGTTGAGGCCAGGGATGAATTGCATAGGATGTTGAATGAGGTATTACATACTAACTTACTATCTAGTTTGAGCTTCTGTTTGAAGTCACTCGTAAATCCCGCTATATCATTTTTGGGAGTACTGTTTGAATGGTTCACGATTTACCATTTTCCTTTTTCTAAATTATTCGCCATCTCATTATCTATCCAAGTTTTAAGCATTGATAATGTTCTTATTATCTAGTCAGACGTCAATGCTTGTCTTTTTGTAATAGACCTGGTACTAGTAGTGTACCCCTTTCCCCCTTGTGTTTCAGTTTATGTAGACACAGGACCATCAGATTCTAATGATATCTCATGTGATCCTAGGATGAGCTGCGAGATGCAGTTTTGCTTGTGTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAGATCACTGACAAGCTTGGGCTCCACTCGCTCCGTCAGCGTCACTGGTAGGCTTTGTCATCTTATCCTGAATCTAAAATTTTCCTTCTCTTAACTTGGCTTACTCAGATGTGAACTTCTTCATGGATATCTTCAGGTACATCCAGAGCACTTGTGCCACCTCTGGAGAGGGGCTTTATGAGGGGTTGGATTGGCTCTCCAACAACATTGCTAATAAGGTAAATATTAACATATTTCTCTGATTTACCAATTGGTTTTGAAACCCGAAAAGCTTTATATCAATTTTCTTTCACTCTATTATTATTATTTACTGAAATCCTGTTGAACAGTGACTTACATCTCTATGCATATGCTCCTATGGTATGCAGGCATGAGCGGTATCGAACAGTTGCTTCTGAGACTCACAGTTCTGGATGCAGGGTGAATATTATCTAATTTTTTTCATGGGGCACCTTACAAAGAGGTTATGGTTTTTCTGTTTACGGGAGCTTTTTTAGCAAACTATTTGTCATTATACTGTAATATCAGAATGGTTAGCCTTGGTTATTGTGTTTGGGGCTCTTTTTTGGGGCTTTACTTGCTTGTTATTCTCATTCGATTTCTAGCTGAAACTAGTTGATGTATCATTCCATGTTGGATTTGTCTCATAACCAATTCTTTTGTTGCTTCCGTTTCAATTTCATTGCATGAATAGTAAGATATAATAATGCCGCATAATTTAGTGTCATGATTAGCTT

mRNA sequence

TGACGCCAATCTGCGACTTCAAAGATCAATGACGTGTTCGATGTTTATTGGAAGTTAATTGACTCTCCTGCGGTACATCAAAAGGGTAGTTTCGTACTTCAACCTGCCCTCGCCTTTCGGTTTATATACAGGGCCCGGGTTGGAATTTCATCTTCCCACCGTTCTTTTTTCTGTCTGTCGTAGATTCTCGGTGGTGCTCGTTGAAGGATGAGCTGCGAGATGCAGTTTTGCTTGTGTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAGATCACTGACAAGCTTGGGCTCCACTCGCTCCGTCAGCGTCACTGGTACATCCAGAGCACTTGTGCCACCTCTGGAGAGGGGCTTTATGAGGGGTTGGATTGGCTCTCCAACAACATTGCTAATAAGGCATGAGCGGTATCGAACAGTTGCTTCTGAGACTCACAGTTCTGGATGCAGGGTGAATATTATCTAATTTTTTTCATGGGGCACCTTACAAAGAGGTTATGGTTTTTCTGTTTACGGGAGCTTTTTTAGCAAACTATTTGTCATTATACTGTAATATCAGAATGGTTAGCCTTGGTTATTGTGTTTGGGGCTCTTTTTTGGGGCTTTACTTGCTTGTTATTCTCATTCGATTTCTAGCTGAAACTAGTTGATGTATCATTCCATGTTGGATTTGTCTCATAACCAATTCTTTTGTTGCTTCCGTTTCAATTTCATTGCATGAATAGTAAGATATAATAATGCCGCATAATTTAGTGTCATGATTAGCTT

Coding sequence (CDS)

ATGCTGCTGAGATCACTGACAAGCTTGGGCTCCACTCGCTCCGTCAGCGTCACTGGTACATCCAGAGCACTTGTGCCACCTCTGGAGAGGGGCTTTATGAGGGGTTGGATTGGCTCTCCAACAACATTGCTAATAAGGCATGAGCGGTATCGAACAGTTGCTTCTGAGACTCACAGTTCTGGATGCAGGGTGAATATTATCTAA

Protein sequence

MLLRSLTSLGSTRSVSVTGTSRALVPPLERGFMRGWIGSPTTLLIRHERYRTVASETHSSGCRVNII
Homology
[Close]
BLAST of Cp4.1LG01g15360 vs. NCBI nr
Match: XP_004135254.2 (LOW QUALITY PROTEIN: ADP-ribosylation factor [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 2.61e-08
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 0 

Query: 31  GFMRGWIGSPTTLLIRHERYRTVASETHSSGCRVNII 67
           G  RGWIGSPTTLL RH+  +  ASET SSGCRVNII
Sbjct: 165 GLYRGWIGSPTTLLTRHKDIQQFASETRSSGCRVNII 201

[Close]
BLAST of Cp4.1LG01g15360 vs. NCBI nr
Match: XP_042485395.1 (uncharacterized protein LOC122065641 isoform X2 [Macadamia integrifolia])

HSP 1 Score: 57.0 bits (136), Expect = 5.12e-08
Identity = 29/46 (63.04%), Postives = 32/46 (69.57%), Query Frame = 0 

Query: 1   MLLRSLTSLGSTRSVSVTGTSRALVPPLERGFMRGWIGSPTTLLIR 46
           ML RS+ SL  T S + TGTS  LV PLER F+RGW  SPTTLL R
Sbjct: 105 MLWRSMISLAFTLSANATGTSIVLVQPLERAFLRGWTSSPTTLLTR 150

[Close]
BLAST of Cp4.1LG01g15360 vs. NCBI nr
Match: XP_042485394.1 (uncharacterized protein LOC122065641 isoform X1 [Macadamia integrifolia])

HSP 1 Score: 57.0 bits (136), Expect = 6.74e-08
Identity = 29/46 (63.04%), Postives = 32/46 (69.57%), Query Frame = 0 

Query: 1   MLLRSLTSLGSTRSVSVTGTSRALVPPLERGFMRGWIGSPTTLLIR 46
           ML RS+ SL  T S + TGTS  LV PLER F+RGW  SPTTLL R
Sbjct: 105 MLWRSMISLAFTLSANATGTSIVLVQPLERAFLRGWTSSPTTLLTR 150

[Close]
BLAST of Cp4.1LG01g15360 vs. NCBI nr
Match: KAG6601505.1 (ADP-ribosylation factor, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 50.4 bits (119), Expect = 1.64e-05
Identity = 22/22 (100.00%), Postives = 22/22 (100.00%), Query Frame = 0 

Query: 17  VTGTSRALVPPLERGFMRGWIG 38
           VTGTSRALVPPLERGFMRGWIG
Sbjct: 124 VTGTSRALVPPLERGFMRGWIG 145

[Close]
BLAST of Cp4.1LG01g15360 vs. NCBI nr
Match: KAE8023476.1 (hypothetical protein FH972_009166 [Carpinus fangiana])

HSP 1 Score: 47.0 bits (110), Expect = 2.22e-04
Identity = 23/31 (74.19%), Postives = 23/31 (74.19%), Query Frame = 0 

Query: 18  TGTSRALVPPLERGFMRGWIGSPTTLLIRHE 48
           T TSRA V P ERGFMRGWIGS TTL  R E
Sbjct: 76  TSTSRAPVQPQERGFMRGWIGSLTTLQTRRE 106

[Close]
BLAST of Cp4.1LG01g15360 vs. ExPASy TrEMBL
Match: A0A7M4DXU7 (Meiosis specific with coiled-coil domain OS=Crocodylus porosus OX=8502 GN=MEIOC PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.77e-06
Identity = 30/67 (44.78%), Postives = 39/67 (58.21%), Query Frame = 0 

Query: 1  MLLRSLTSLGSTRSVSVTGTSRALVPPLERGFMRGWIGSPTTLLIRHERYRTVASETH-- 60
          ML RS T+L     V  TGTS+  VPP+E GFMR WIGSPT+   R++ +    S+    
Sbjct: 1  MLQRSQTNLACIPFVRETGTSKQRVPPVEMGFMRVWIGSPTSSKTRNDPFVAYLSKPRVA 60

Query: 61 ---SSGC 62
             +SGC
Sbjct: 61 FRSTSGC 67

[Close]
BLAST of Cp4.1LG01g15360 vs. ExPASy TrEMBL
Match: A0A5N6R138 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_009166 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.08e-04
Identity = 23/31 (74.19%), Postives = 23/31 (74.19%), Query Frame = 0 

Query: 18  TGTSRALVPPLERGFMRGWIGSPTTLLIRHE 48
           T TSRA V P ERGFMRGWIGS TTL  R E
Sbjct: 76  TSTSRAPVQPQERGFMRGWIGSLTTLQTRRE 106

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g15360 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g15360 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004135254.22.61e-0872.97LOW QUALITY PROTEIN: ADP-ribosylation factor [Cucumis sativus][more]
XP_042485395.15.12e-0863.04uncharacterized protein LOC122065641 isoform X2 [Macadamia integrifolia][more]
XP_042485394.16.74e-0863.04uncharacterized protein LOC122065641 isoform X1 [Macadamia integrifolia][more]
KAG6601505.11.64e-05100.00ADP-ribosylation factor, partial [Cucurbita argyrosperma subsp. sororia][more]
KAE8023476.12.22e-0474.19hypothetical protein FH972_009166 [Carpinus fangiana][more]
BLAST of Cp4.1LG01g15360 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7M4DXU74.77e-0644.78Meiosis specific with coiled-coil domain OS=Crocodylus porosus OX=8502 GN=MEIOC ... [more]
A0A5N6R1381.08e-0474.19Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_009166 PE=3 SV=1[more]
BLAST of Cp4.1LG01g15360 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g15360.1Cp4.1LG01g15360.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
molecular_function GO:0005525 GTP binding