Cp4.1LG01g15290 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g15290
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	hybrid signal transduction histidine kinase L
Location	Cp4.1LG01: 9181544 .. 9182044 (-)
RNA-Seq Expression	Cp4.1LG01g15290
Synteny	Cp4.1LG01g15290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGACCTTCAACAGCAGCAGCAGCAGCAGCAGCAGCCGGCTTTGGTTTATCCCAACACTGCCGCCGTTGGCAGCCAACCGCCTCCTTCCCACCACTCCAACGGCTCATTCGGGGCAGTTTTTATAGTTCTTGCTGTTATTCTTGTCATATCCACTGTTGCTTGCTTCCTTGGCCGACTCTGCAACCGGCGAGCTGAAAACCAGAGGGCGAAGCCGGAGAAAACCCACGGCGGCGCTCGTCCCAGAGGGAAAGAACCCAAATTGCATCCTGACAAAGAAGGAGACATCGAATTTGGATTGGATTTGAGAAACCCAAATGGGAAAGGCAAAGCCCCATCTGGTGGAAATGGAGGAACCAAAGGCAACGGCCATGGGCCTAATGGGCCTAATGGCCATAGCCATGGGTTCAAACCCTTCGAAAATGGCCAAATCAAGCACGCGGATGATGATCATCATGAAGGGGATTTCAAGTTCAAAGCAGCAGCTCATCCGGTTTGA

mRNA sequence

ATGTCGGACCTTCAACAGCAGCAGCAGCAGCAGCAGCAGCCGGCTTTGGTTTATCCCAACACTGCCGCCGTTGGCAGCCAACCGCCTCCTTCCCACCACTCCAACGGCTCATTCGGGGCAGTTTTTATAGTTCTTGCTGTTATTCTTGTCATATCCACTGTTGCTTGCTTCCTTGGCCGACTCTGCAACCGGCGAGCTGAAAACCAGAGGGCGAAGCCGGAGAAAACCCACGGCGGCGCTCGTCCCAGAGGGAAAGAACCCAAATTGCATCCTGACAAAGAAGGAGACATCGAATTTGGATTGGATTTGAGAAACCCAAATGGGAAAGGCAAAGCCCCATCTGGTGGAAATGGAGGAACCAAAGGCAACGGCCATGGGCCTAATGGGCCTAATGGCCATAGCCATGGGTTCAAACCCTTCGAAAATGGCCAAATCAAGCACGCGGATGATGATCATCATGAAGGGGATTTCAAGTTCAAAGCAGCAGCTCATCCGGTTTGA

Coding sequence (CDS)

ATGTCGGACCTTCAACAGCAGCAGCAGCAGCAGCAGCAGCCGGCTTTGGTTTATCCCAACACTGCCGCCGTTGGCAGCCAACCGCCTCCTTCCCACCACTCCAACGGCTCATTCGGGGCAGTTTTTATAGTTCTTGCTGTTATTCTTGTCATATCCACTGTTGCTTGCTTCCTTGGCCGACTCTGCAACCGGCGAGCTGAAAACCAGAGGGCGAAGCCGGAGAAAACCCACGGCGGCGCTCGTCCCAGAGGGAAAGAACCCAAATTGCATCCTGACAAAGAAGGAGACATCGAATTTGGATTGGATTTGAGAAACCCAAATGGGAAAGGCAAAGCCCCATCTGGTGGAAATGGAGGAACCAAAGGCAACGGCCATGGGCCTAATGGGCCTAATGGCCATAGCCATGGGTTCAAACCCTTCGAAAATGGCCAAATCAAGCACGCGGATGATGATCATCATGAAGGGGATTTCAAGTTCAAAGCAGCAGCTCATCCGGTTTGA

Protein sequence

MSDLQQQQQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGRLCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGTKGNGHGPNGPNGHSHGFKPFENGQIKHADDDHHEGDFKFKAAAHPV

Homology

[Close]

BLAST of Cp4.1LG01g15290 vs. NCBI nr
Match: XP_023543410.1 (uncharacterized protein LOC111803300 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330 bits (847), Expect = 2.01e-113
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MSDLQQQQQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGR 60
           MSDLQQQQQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGR
Sbjct: 48  MSDLQQQQQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGR 107

Query: 61  LCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGT 120
           LCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGT
Sbjct: 108 LCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGT 167

Query: 121 KGNGHGPNGPNGHSHGFKPFENGQIKHADDDHHEGDFKFKAAAHPV 166
           KGNGHGPNGPNGHSHGFKPFENGQIKHADDDHHEGDFKFKAAAHPV
Sbjct: 168 KGNGHGPNGPNGHSHGFKPFENGQIKHADDDHHEGDFKFKAAAHPV 213

[Close]

BLAST of Cp4.1LG01g15290 vs. NCBI nr
Match: KAG6601504.1 (hypothetical protein SDJN03_06737, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 322 bits (826), Expect = 6.85e-111
Identity = 165/169 (97.63%), Postives = 165/169 (97.63%), Query Frame = 0


Query: 1   MSDLQQQQQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGR 60
           MSDLQQQQQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGR
Sbjct: 1   MSDLQQQQQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGR 60

Query: 61  LCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGT 120
           LCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGT
Sbjct: 61  LCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGT 120

Query: 121 KGNGHGPNGPNG---HSHGFKPFENGQIKHADDDHHEGDFKFKAAAHPV 166
           KGNGHGPNGPNG   HSHGFKPFENGQIKHADD HHEGDFKFKAAAHPV
Sbjct: 121 KGNGHGPNGPNGPNGHSHGFKPFENGQIKHADDHHHEGDFKFKAAAHPV 169

[Close]

BLAST of Cp4.1LG01g15290 vs. NCBI nr
Match: KAG7032287.1 (hypothetical protein SDJN02_06331, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 322 bits (825), Expect = 8.47e-111
Identity = 164/166 (98.80%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 1   MSDLQQQQQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGR 60
           MSDLQQQQ QQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGR
Sbjct: 1   MSDLQQQQ-QQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGR 60

Query: 61  LCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGT 120
           LCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGT
Sbjct: 61  LCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGT 120

Query: 121 KGNGHGPNGPNGHSHGFKPFENGQIKHADDDHHEGDFKFKAAAHPV 166
           KGNGHGPNGPNGHSHGFKPFENGQIKHADD HHEGDFKFKAAAHPV
Sbjct: 121 KGNGHGPNGPNGHSHGFKPFENGQIKHADDHHHEGDFKFKAAAHPV 165

[Close]

BLAST of Cp4.1LG01g15290 vs. NCBI nr
Match: XP_022956516.1 (uncharacterized protein LOC111458233 [Cucurbita moschata])

HSP 1 Score: 313 bits (802), Expect = 3.02e-107
Identity = 162/171 (94.74%), Postives = 162/171 (94.74%), Query Frame = 0


Query: 1   MSDLQQQQQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGR 60
           MSDLQQ   QQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVAC LGR
Sbjct: 1   MSDLQQ---QQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACLLGR 60

Query: 61  LCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGT 120
           LCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGT
Sbjct: 61  LCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGT 120

Query: 121 KGNGHGPNGPNGHSHGFKPFENG-----QIKHADDDHHEGDFKFKAAAHPV 166
           KGNGHGPNGPNGHSHGFKPFENG     QIKHADDDHHEGDFKFKAAAHPV
Sbjct: 121 KGNGHGPNGPNGHSHGFKPFENGGEMRGQIKHADDDHHEGDFKFKAAAHPV 168

[Close]

BLAST of Cp4.1LG01g15290 vs. NCBI nr
Match: XP_022972292.1 (uncharacterized protein LOC111470841 [Cucurbita maxima] >XP_022972361.1 uncharacterized protein LOC111470841 [Cucurbita maxima])

HSP 1 Score: 301 bits (772), Expect = 1.10e-102
Identity = 157/171 (91.81%), Postives = 159/171 (92.98%), Query Frame = 0


Query: 1   MSDLQQQQQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGR 60
           MS+LQ    QQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGR
Sbjct: 1   MSELQ----QQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGR 60

Query: 61  LCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGT 120
           LCNRRAENQRAKPEKTHGGARPRGKEPKLHPDK+GDIEFGLDLRNPNGKGKA SGGNGGT
Sbjct: 61  LCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKDGDIEFGLDLRNPNGKGKALSGGNGGT 120

Query: 121 KGNGHGPNGPNGHSHGFKPFENG-----QIKHADDDHHEGDFKFKAAAHPV 166
           KGNGHGPN PNGHSHGFKPFENG     QIKHADD HHEGDFKFKAAAHPV
Sbjct: 121 KGNGHGPNEPNGHSHGFKPFENGGEMRGQIKHADDHHHEGDFKFKAAAHPV 167

[Close]

BLAST of Cp4.1LG01g15290 vs. ExPASy TrEMBL
Match: A0A6J1GWS9 (uncharacterized protein LOC111458233 OS=Cucurbita moschata OX=3662 GN=LOC111458233 PE=4 SV=1)

HSP 1 Score: 313 bits (802), Expect = 1.46e-107
Identity = 162/171 (94.74%), Postives = 162/171 (94.74%), Query Frame = 0


Query: 1   MSDLQQQQQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGR 60
           MSDLQQ   QQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVAC LGR
Sbjct: 1   MSDLQQ---QQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACLLGR 60

Query: 61  LCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGT 120
           LCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGT
Sbjct: 61  LCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGT 120

Query: 121 KGNGHGPNGPNGHSHGFKPFENG-----QIKHADDDHHEGDFKFKAAAHPV 166
           KGNGHGPNGPNGHSHGFKPFENG     QIKHADDDHHEGDFKFKAAAHPV
Sbjct: 121 KGNGHGPNGPNGHSHGFKPFENGGEMRGQIKHADDDHHEGDFKFKAAAHPV 168

[Close]

BLAST of Cp4.1LG01g15290 vs. ExPASy TrEMBL
Match: A0A6J1I4F2 (uncharacterized protein LOC111470841 OS=Cucurbita maxima OX=3661 GN=LOC111470841 PE=4 SV=1)

HSP 1 Score: 301 bits (772), Expect = 5.30e-103
Identity = 157/171 (91.81%), Postives = 159/171 (92.98%), Query Frame = 0


Query: 1   MSDLQQQQQQQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGR 60
           MS+LQ    QQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGR
Sbjct: 1   MSELQ----QQQQPALVYPNTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGR 60

Query: 61  LCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGT 120
           LCNRRAENQRAKPEKTHGGARPRGKEPKLHPDK+GDIEFGLDLRNPNGKGKA SGGNGGT
Sbjct: 61  LCNRRAENQRAKPEKTHGGARPRGKEPKLHPDKDGDIEFGLDLRNPNGKGKALSGGNGGT 120

Query: 121 KGNGHGPNGPNGHSHGFKPFENG-----QIKHADDDHHEGDFKFKAAAHPV 166
           KGNGHGPN PNGHSHGFKPFENG     QIKHADD HHEGDFKFKAAAHPV
Sbjct: 121 KGNGHGPNEPNGHSHGFKPFENGGEMRGQIKHADDHHHEGDFKFKAAAHPV 167

[Close]

BLAST of Cp4.1LG01g15290 vs. ExPASy TrEMBL
Match: A0A0A0KTP5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G601520 PE=4 SV=1)

HSP 1 Score: 230 bits (587), Expect = 1.75e-74
Identity = 137/189 (72.49%), Postives = 146/189 (77.25%), Query Frame = 0


Query: 1   MSDLQQQQ----QQQQQPALVYPNTAAV--GSQPPPSHHSNGSFGAVFIVLAVILVISTV 60
           MS+LQQQQ    QQQQQPA VYP+TAA   GSQ PP HHSNGSFGAVFIVLAVI+VIS +
Sbjct: 1   MSELQQQQPQRQQQQQQPAYVYPDTAATSAGSQVPPPHHSNGSFGAVFIVLAVIVVISAL 60

Query: 61  ACFLGRLCNRRAEN-QRAKPEKTHGGARP-RGKEPKLHPDKEGDIEFGLDLRNPNGKGKA 120
           ACFLGRLCNRR EN QR KPEK+H GARP RGKEPKLHPDKEGDIEFG DLRNP+GKGK 
Sbjct: 61  ACFLGRLCNRRVENHQRPKPEKSHSGARPTRGKEPKLHPDKEGDIEFGFDLRNPSGKGKF 120

Query: 121 PSGGNGGT---------KGNGHGP---NGPNGHSHGFKPFENG-----QIKHADDDHHEG 164
           PSGGNG T         KGNG+GP   NGPNGH + FKPFENG     +IKH D  HHEG
Sbjct: 121 PSGGNGSTGNGNGGSKGKGNGNGPIGLNGPNGHGNSFKPFENGGETRSEIKHTD--HHEG 180

[Close]

BLAST of Cp4.1LG01g15290 vs. ExPASy TrEMBL
Match: A0A5A7ST81 (Hybrid signal transduction histidine kinase L OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001050 PE=4 SV=1)

HSP 1 Score: 226 bits (577), Expect = 6.22e-73
Identity = 132/180 (73.33%), Postives = 140/180 (77.78%), Query Frame = 0


Query: 5   QQQQQQQQQPALVYPNTAAV--GSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGRLC 64
           QQQQQQQQQPA VYP+TAA   GSQ PPSHHSNGSFGAVFIVLAVI+VIS +ACFLGRLC
Sbjct: 12  QQQQQQQQQPAYVYPDTAATSAGSQVPPSHHSNGSFGAVFIVLAVIVVISALACFLGRLC 71

Query: 65  NRRAEN-QRAKPEKTHGGARP-RGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGT 124
           NRR EN QR KPEK+H GARP RGKEPKLHPDKEGDIEFG DLRNP+GKGK P GGNG  
Sbjct: 72  NRRVENHQRPKPEKSHAGARPTRGKEPKLHPDKEGDIEFGFDLRNPSGKGKFPPGGNGNG 131

Query: 125 --------KGNGHGP---NGPNGHSHGFKPFENG-----QIKHADDDHHEGDFKFKAAAH 164
                   KGNG+GP   NGPNGH + FKPFENG     +IKH D  HHEGDF FKA  H
Sbjct: 132 NGNGGSKGKGNGNGPIGLNGPNGHGNSFKPFENGGETRSEIKHTD--HHEGDFNFKAGGH 189

[Close]

BLAST of Cp4.1LG01g15290 vs. ExPASy TrEMBL
Match: E5GBJ1 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 226 bits (577), Expect = 6.22e-73
Identity = 132/180 (73.33%), Postives = 140/180 (77.78%), Query Frame = 0


Query: 5   QQQQQQQQQPALVYPNTAAV--GSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGRLC 64
           QQQQQQQQQPA VYP+TAA   GSQ PPSHHSNGSFGAVFIVLAVI+VIS +ACFLGRLC
Sbjct: 12  QQQQQQQQQPAYVYPDTAATSAGSQVPPSHHSNGSFGAVFIVLAVIVVISALACFLGRLC 71

Query: 65  NRRAEN-QRAKPEKTHGGARP-RGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGNGGT 124
           NRR EN QR KPEK+H GARP RGKEPKLHPDKEGDIEFG DLRNP+GKGK P GGNG  
Sbjct: 72  NRRVENHQRPKPEKSHAGARPTRGKEPKLHPDKEGDIEFGFDLRNPSGKGKFPPGGNGNG 131

Query: 125 --------KGNGHGP---NGPNGHSHGFKPFENG-----QIKHADDDHHEGDFKFKAAAH 164
                   KGNG+GP   NGPNGH + FKPFENG     +IKH D  HHEGDF FKA  H
Sbjct: 132 NGNGGSKGKGNGNGPIGLNGPNGHGNSFKPFENGGETRSEIKHTD--HHEGDFNFKAGGH 189

[Close]

BLAST of Cp4.1LG01g15290 vs. TAIR 10
Match: AT1G23530.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70470.1); Has 38 Blast hits to 38 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 5.6e-12
Identity = 67/181 (37.02%), Postives = 90/181 (49.72%), Query Frame = 0


Query: 6   QQQQQQQQPALVYPNT-----AAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGR 65
           Q  QQ QQP +VYPN          ++P  S  S+G+FG VFIVLAVI V+S +AC  GR
Sbjct: 4   QGVQQMQQPIVVYPNAYNKQYPDPSTKPSSSSGSSGNFGTVFIVLAVIFVLSALACVFGR 63

Query: 66  LCNRR---AENQRAKPEKTHGGARPRGKE---PKLHPDKEGDIEFGLDLRNPNGKGKAPS 125
           LCNR    A+ Q +K  K    +  + +E    +  P + GD++FG D++ P    K PS
Sbjct: 64  LCNRESRAAKQQHSKHPKHEKASSKKSREIRPVEREPRERGDMDFGFDMKRPEPIEK-PS 123

Query: 126 GGNGGTK----------------GNGHGPNGPN-GHSHGFKPFENGQIKHADDDHHEGDF 159
           G +GG                  G G GP  PN  H+  FK  ENG      D H +G+ 
Sbjct: 124 GRDGGEDIEFGFDNKRGERGREGGGGGGPPPPNIKHAVRFKLPENG------DHHSKGEI 177

[Close]

BLAST of Cp4.1LG01g15290 vs. TAIR 10
Match: AT1G70470.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23530.1); Has 64 Blast hits to 64 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa - 7; Fungi - 10; Plants - 43; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 64.7 bits (156), Expect = 8.0e-11
Identity = 57/148 (38.51%), Postives = 76/148 (51.35%), Query Frame = 0


Query: 7   QQQQQQQPALVYPNTAAVGSQ--PPPSHHSNGSFGAVFIVLAVILVISTVACFLGRLCNR 66
           Q Q+ QQP  VYP+T++  S    P S  S+GSFG  FIVLA ILV++ +AC  GRLCNR
Sbjct: 4   QPQEFQQPQ-VYPSTSSSTSSSFSPSSSGSSGSFGTAFIVLAAILVLAALACVFGRLCNR 63

Query: 67  -------RAENQRAKPEKTHGGARPRGKEPKLHPDKEGDIEFGLDLRNPNGKGKAPSGGN 126
                  +  N+ +K EK         +  +  P + GD+EFG D++ P    K P+G N
Sbjct: 64  GGKQHKDKNNNKASKHEKPSSKKSREIRPVEREPRERGDVEFGFDMKRPGPMSK-PTGRN 123

Query: 127 GG------TKGNGHGPNGPNGHSHGFKP 140
           GG          G G  G  G   G +P
Sbjct: 124 GGDIEFGFDNKRGGGGGGGGGGKGGKRP 149

[Close]

BLAST of Cp4.1LG01g15290 vs. TAIR 10
Match: AT1G74055.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 2.5e-04
Identity = 23/64 (35.94%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 4  LQQQQQQQQQPALVYP---NTAAVGSQPPPSHHSNGSFGAVFIVLAVILVISTVACFLGR 63
          +QQQ QQQ     + P   N   + +   P+H+S+ S G  F V++V+++++ ++CFLGR
Sbjct: 15 IQQQPQQQLGGNEITPMATNANLIAAPNAPNHYSSSSIGPFFAVISVLIILAVLSCFLGR 74

Query: 64 LCNR 65
           C R
Sbjct: 75 FCAR 78

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g15290 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g15290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023543410.1	2.01e-113	100.00	uncharacterized protein LOC111803300 [Cucurbita pepo subsp. pepo]	[more]
KAG6601504.1	6.85e-111	97.63	hypothetical protein SDJN03_06737, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7032287.1	8.47e-111	98.80	hypothetical protein SDJN02_06331, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022956516.1	3.02e-107	94.74	uncharacterized protein LOC111458233 [Cucurbita moschata]	[more]
XP_022972292.1	1.10e-102	91.81	uncharacterized protein LOC111470841 [Cucurbita maxima] >XP_022972361.1 uncharac...	[more]

BLAST of Cp4.1LG01g15290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GWS9	1.46e-107	94.74	uncharacterized protein LOC111458233 OS=Cucurbita moschata OX=3662 GN=LOC1114582...	[more]
A0A6J1I4F2	5.30e-103	91.81	uncharacterized protein LOC111470841 OS=Cucurbita maxima OX=3661 GN=LOC111470841...	[more]
A0A0A0KTP5	1.75e-74	72.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G601520 PE=4 SV=1	[more]
A0A5A7ST81	6.22e-73	73.33	Hybrid signal transduction histidine kinase L OS=Cucumis melo var. makuwa OX=119...	[more]
E5GBJ1	6.22e-73	73.33	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g15290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23530.1	5.6e-12	37.02	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G70470.1	8.0e-11	38.51	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G74055.1	2.5e-04	35.94	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..100
None	No IPR available	PANTHER	PTHR33429:SF7	OS02G0708000 PROTEIN	coord: 1..153
None	No IPR available	PANTHER	PTHR33429	OS02G0708000 PROTEIN-RELATED	coord: 1..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g15290.1	Cp4.1LG01g15290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane