Cp4.1LG01g15160 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g15160
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein CRABS CLAW
Location	Cp4.1LG01: 9051093 .. 9053781 (+)
RNA-Seq Expression	Cp4.1LG01g15160
Synteny	Cp4.1LG01g15160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCCACAAAAGCAGCCCTTCCTCAACAGACCCACTTCTCATCTCTTCATTATGCTAAAACCCTTGCCTTAGCTCAACCAAACCTTCCTTCCTTGCCCACAATTCTCCTTCTCTCAAACATTAATGAGCAGCTCCCAAGACAAATCTTCCATGGATTTGGTTCAACCAAATGACCATCTTTGTTATGTCAAATGCAACTTTTGCAACACTCTTCTCGCGGTAACCTTCTCTCGTCTATACTCAATTTTACGATCCACTTTGAGTATACGTGTTCATGGCTTTTCTTTTCATGCTCGTGTCTTTTATTTATATACCCATGATTTTTTCTTTAATTAGCTAACATAGGACTCTAACAATCCTCTCCGAGCCTCTATGACTGAAGATCCGTGGTAAAACCCTATTGGATTACCAATGTGTTCTAGAGAAAAAGGGTTGTCTGGATAGTGCTAGACGGATAGATAACTCAATCGTAGTTTGCTCGAGGAGAGGATTGTTGGAGTCCATTAACGTGAGGACTTTTGGAGTATACGTGTTCATGGCTTTCCTTTTCATGATCGTGTCTTTTATTTATATACCCACGATTTTTCTTTTAATTAGCTAACATAGGACTCTAACAATCCTCTCCGAGCCTCTATGACTGAAGATCCGTGGTAAAACCCTATTGGATTACCAATATGTTCTAGAGAAAAGGGGTTGTCTAGATAGTGCTAGACGGATAGATAACTCAATTGTAGTCTGCTCGAGGAGAGGATTGTTGGAGTCCTTTTAACGTGAGGACTTTTGAAGAAACCAAAAGGAAAACCACGAACTAAGGCTAAATATGGTTGGATTTTGTTGGGTTTGGAAGGTTGGGATACCATGCAGACGTTTGTTGGAGACAGTGACAGTGAAATGTGGTAATTGTAGTAATCTGTCGTTTTTGAGCACAAGACCACCTTTACAAGGCCAATGCATTGATCATCATCCTCTCACTTTTCAGGTGACCTCCACAAATAGTTAAAGATTGATATTGATATTGAGTTATAAGAATTTTTCCAATGATCAAACTAATTGATATTCATCTTGTTGCAATCAGCCTCAGGTTGGCTTCTCTAATGATACTCAAAAGGGTGCATCGATATCGTCTACATCGTCGTCGTCTTCAATGCCAAATGAACCTCCCTCTCCAAATTTTGTTGTCAAACGTATGTTTTACTGTTCTATTACTAATTCAAGTTGTTCTTAATATAATCCATCCAAGATTAAATTTATTTTTCCTACATGAAAATACAAAATCAAATCATTATCAAACGATTTTCATTTTTTATCTTTAAATATTAGGGTTAATTTTTTCACAATTTCTTCACATGGGTATTCATGAATCTTAAAGAAAATATTTGAGTTTATTGTTAAATTCCAAGAAAAAAAAATTAAATAGACTAGAATAAAAAAAAAATACATTTCAATTTTATACTTATTTCAAAAGTATTCCTAAACTTTCAAAATTTTCAATAACAGACTTAAACTTTCAACAAAAAGTTTAAAAATACTCGTATTCAGTTAATATTCGGTTAGAAAATACCTTTTAACATTTAAAAATTGTTTAAAAAATACTCCTTTAACTTATAAACGTGTTTCAAAAACACCCTCGAATTTTCAAAAAATCAACTAATTATCTTTAAACATTTTTTAAAAAAAACTTCAAAAACATCTTTAAATTTTTAAAAAATTCAAAAATACATTTAAGGTAAATACAACATTTAAAAAATACTCATAAACTATCCAAAAGAACCTTAAAACGTTTATGGATAATCTAAGAGATGTCGATAGACGATTTTCATTAATATATTAGCACAAAGAATATTTCAAATTTTTTATAATAAATATAAAAATTAATGTTTTTTTTTATTATTTAAACATATCAAACTTATTTTTTTAGACTTTTTTAAAAGTTTAAGGATATTATTGAAAAGTTTAACGGCATTGAAGTATAAAGTTTAGAAGTATTTAAAAAATCGTGTTTTTATTTATTTATTTATTATTATTTTTTTTTCAGCTCCGGAGAAGAAACACAGACTCCCATCAGCTTACAATTGTTTCATGAAGTAAGAAGAGTTAATTGATTAAGCAGAAAAGGAATTAAAAATAAAAATAAAATTGTTAGCAGTCTTCTTGACAATATATTGTTGTGTTAGGGAGGAGATTCAACGCATCAAAGCTGCCAACCCAGAAATCCCACATCGAGAAGCATTCAGTGCCGCAGCAAAAAACGTAATTTAATTATTATTTTTTTTTTTATCATTTATTTTCTTAATTCCTTCGAAATAAATTAACGTTGTCACAACAGTGGGCAAGGTACATTCCAAATTCCGCAGCTGGGTCGGTTTCTGGGACTCCCAACGACGTAAGAAAAAGGGTATTATTGTATTTTTACATAAATAAAGCAACTATTTTTGTAGTTCATATTTAAGGTTCTTAGGGTTTTCAAACTTGCAGGAATGATACGGTTTAGAGCACTGGAAGAATCGGACATATCAAATGGCTGTCTGCTCTAGGGTTTGATCATCTTAAGATTCGCCATCTCTGTGTCTCCATGTCTTTATTTATTTATTTTTCTCGCATTTCATGTTTTTCTTTATGCTACTTTTCATTTTCTGTTGCCTGTGGATTAAAACCTATATTATTTTCTAATATAAGGTAATTTATATAT

mRNA sequence

CACCCACAAAAGCAGCCCTTCCTCAACAGACCCACTTCTCATCTCTTCATTATGCTAAAACCCTTGCCTTAGCTCAACCAAACCTTCCTTCCTTGCCCACAATTCTCCTTCTCTCAAACATTAATGAGCAGCTCCCAAGACAAATCTTCCATGGATTTGGTTCAACCAAATGACCATCTTTGTTATGTCAAATGCAACTTTTGCAACACTCTTCTCGCGGTTGGGATACCATGCAGACGTTTGTTGGAGACAGTGACAGTGAAATGTGGTAATTGTAGTAATCTGTCGTTTTTGAGCACAAGACCACCTTTACAAGGCCAATGCATTGATCATCATCCTCTCACTTTTCAGCCTCAGGTTGGCTTCTCTAATGATACTCAAAAGGGTGCATCGATATCGTCTACATCGTCGTCGTCTTCAATGCCAAATGAACCTCCCTCTCCAAATTTTGTTGTCAAACGAGATTCAACGCATCAAAGCTGCCAACCCAGAAATCCCACATCGAGAAGCATTCAGTGCCGCAGCAAAAAACTGGGCAAGGTACATTCCAAATTCCGCAGCTGGGTCGGTTTCTGGGACTCCCAACGACGAATGATACGGTTTAGAGCACTGGAAGAATCGGACATATCAAATGGCTGTCTGCTCTAGGGTTTGATCATCTTAAGATTCGCCATCTCTGTGTCTCCATGTCTTTATTTATTTATTTTTCTCGCATTTCATGTTTTTCTTTATGCTACTTTTCATTTTCTGTTGCCTGTGGATTAAAACCTATATTATTTTCTAATATAAGGTAATTTATATAT

Coding sequence (CDS)

ATGAGCAGCTCCCAAGACAAATCTTCCATGGATTTGGTTCAACCAAATGACCATCTTTGTTATGTCAAATGCAACTTTTGCAACACTCTTCTCGCGGTTGGGATACCATGCAGACGTTTGTTGGAGACAGTGACAGTGAAATGTGGTAATTGTAGTAATCTGTCGTTTTTGAGCACAAGACCACCTTTACAAGGCCAATGCATTGATCATCATCCTCTCACTTTTCAGCCTCAGGTTGGCTTCTCTAATGATACTCAAAAGGGTGCATCGATATCGTCTACATCGTCGTCGTCTTCAATGCCAAATGAACCTCCCTCTCCAAATTTTGTTGTCAAACGAGATTCAACGCATCAAAGCTGCCAACCCAGAAATCCCACATCGAGAAGCATTCAGTGCCGCAGCAAAAAACTGGGCAAGGTACATTCCAAATTCCGCAGCTGGGTCGGTTTCTGGGACTCCCAACGACGAATGATACGGTTTAGAGCACTGGAAGAATCGGACATATCAAATGGCTGTCTGCTCTAG

Protein sequence

MSSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQGQCIDHHPLTFQPQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVKRDSTHQSCQPRNPTSRSIQCRSKKLGKVHSKFRSWVGFWDSQRRMIRFRALEESDISNGCLL

Homology

[Close]

BLAST of Cp4.1LG01g15160 vs. ExPASy Swiss-Prot
Match: Q8L925 (Protein CRABS CLAW OS=Arabidopsis thaliana OX=3702 GN=CRC PE=1 SV=2)

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-22
Identity = 57/96 (59.38%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 17  DHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQGQCIDHHPLTFQ 76
           +HL YV+C+ CNT+LAVGIP +R+L+TVTVKCG+C NLSFL+T PPLQG    H  LT Q
Sbjct: 19  EHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNLSFLTTTPPLQG----HVSLTLQ 78

Query: 77  PQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVK 113
            Q    +D +KG+S SS+SS+SS     PSP FVVK
Sbjct: 79  MQSFGGSDYKKGSSSSSSSSTSSDQPPSPSPPFVVK 110

[Close]

BLAST of Cp4.1LG01g15160 vs. ExPASy Swiss-Prot
Match: Q76EJ0 (Protein DROOPING LEAF OS=Oryza sativa subsp. japonica OX=39947 GN=DL PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-20
Identity = 55/105 (52.38%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 10  MDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPL-QGQCI 69
           MDLV P++HLCYV+C +CNT+LAVG+PC+RL++TVTVKCG+C+NLSFLS RPP+ Q    
Sbjct: 1   MDLVSPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSFLSPRPPMVQPLSP 60

Query: 70  DHHPL-TFQPQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVK 113
             HPL  FQ         Q    +S TS+  S     P   FVVK
Sbjct: 61  TDHPLGPFQGPCTDCRRNQPLPLVSPTSNEGS-----PRAPFVVK 100

[Close]

BLAST of Cp4.1LG01g15160 vs. ExPASy Swiss-Prot
Match: A2X7Q3 (Protein YABBY 4 OS=Oryza sativa subsp. indica OX=39946 GN=YAB4 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-10
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 1  MSSSQDKSS------MDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNL 60
          MSSS   S+      +    P + LCYV CN C+T+LAVG+PC  L +TVTV+CG+C+NL
Sbjct: 1  MSSSSSSSAVFPLDHLAAPSPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANL 60

[Close]

BLAST of Cp4.1LG01g15160 vs. ExPASy Swiss-Prot
Match: Q6H668 (Protein YABBY 4 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB4 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-10
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 1  MSSSQDKSS------MDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNL 60
          MSSS   S+      +    P + LCYV CN C+T+LAVG+PC  L +TVTV+CG+C+NL
Sbjct: 1  MSSSSSSSAVFPLDHLAAPSPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANL 60

[Close]

BLAST of Cp4.1LG01g15160 vs. ExPASy Swiss-Prot
Match: O22152 (Axial regulator YABBY 1 OS=Arabidopsis thaliana OX=3702 GN=YAB1 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-09
Identity = 48/151 (31.79%), Postives = 74/151 (49.01%), Query Frame = 0


Query: 2   SSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRP 61
           S S    S D   P+DHLCYV+CNFC T+LAV +P   L +TVTV+CG C+NL  ++ R 
Sbjct: 8   SPSSAVCSPDHFSPSDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRS 67

Query: 62  -------PLQGQCIDHHPLTFQPQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVKRD 121
                   LQ Q   H    F PQ     D  +    + ++ +  M N+ P+ N +    
Sbjct: 68  YVLPASNQLQLQLGPHS--YFNPQ-----DILEELRDAPSNMNMMMMNQHPTMNDIPSFM 127

Query: 122 STHQSCQ-PRNPTSRSIQCRSKKLGKVHSKF 145
             HQ  + P+ P       + +++   +++F
Sbjct: 128 DLHQQHEIPKAPPVNRPPEKRQRVPSAYNRF 151

[Close]

BLAST of Cp4.1LG01g15160 vs. NCBI nr
Match: XP_023515593.1 (protein CRABS CLAW-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231 bits (590), Expect = 1.02e-74
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MSSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTR 60
           MSSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTR
Sbjct: 1   MSSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTR 60

Query: 61  PPLQGQCIDHHPLTFQPQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVK 112
           PPLQGQCIDHHPLTFQPQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVK
Sbjct: 61  PPLQGQCIDHHPLTFQPQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVK 112

[Close]

BLAST of Cp4.1LG01g15160 vs. NCBI nr
Match: XP_023515588.1 (protein CRABS CLAW-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231 bits (590), Expect = 1.16e-74
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MSSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTR 60
           MSSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTR
Sbjct: 1   MSSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTR 60

Query: 61  PPLQGQCIDHHPLTFQPQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVK 112
           PPLQGQCIDHHPLTFQPQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVK
Sbjct: 61  PPLQGQCIDHHPLTFQPQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVK 112

[Close]

BLAST of Cp4.1LG01g15160 vs. NCBI nr
Match: XP_022978498.1 (protein CRABS CLAW-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 222 bits (566), Expect = 4.56e-71
Identity = 107/112 (95.54%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MSSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTR 60
           M SS+DKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLST 
Sbjct: 1   MGSSEDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTI 60

Query: 61  PPLQGQCIDHHPLTFQPQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVK 112
           PPLQGQCIDHHPLTFQPQVGFSNDT+KGASISSTSSSSSMPNEPPSP+FVVK
Sbjct: 61  PPLQGQCIDHHPLTFQPQVGFSNDTRKGASISSTSSSSSMPNEPPSPSFVVK 112

[Close]

BLAST of Cp4.1LG01g15160 vs. NCBI nr
Match: XP_022978489.1 (protein CRABS CLAW-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 222 bits (566), Expect = 5.21e-71
Identity = 107/112 (95.54%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MSSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTR 60
           M SS+DKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLST 
Sbjct: 1   MGSSEDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTI 60

Query: 61  PPLQGQCIDHHPLTFQPQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVK 112
           PPLQGQCIDHHPLTFQPQVGFSNDT+KGASISSTSSSSSMPNEPPSP+FVVK
Sbjct: 61  PPLQGQCIDHHPLTFQPQVGFSNDTRKGASISSTSSSSSMPNEPPSPSFVVK 112

[Close]

BLAST of Cp4.1LG01g15160 vs. NCBI nr
Match: XP_022956963.1 (protein CRABS CLAW-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 218 bits (554), Expect = 3.16e-69
Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = 0


Query: 1   MSSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTR 60
           MSSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTR
Sbjct: 1   MSSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTR 60

Query: 61  PPLQGQCIDHHPLTFQPQVGFSNDTQKGASISSTSSSSS-MPNEPPSPNFVVK 112
           PPLQGQ IDHHPLTFQPQVGFS DT+KGASISSTSSSSS MPNEPPSPNFVVK
Sbjct: 61  PPLQGQRIDHHPLTFQPQVGFSYDTRKGASISSTSSSSSSMPNEPPSPNFVVK 113

[Close]

BLAST of Cp4.1LG01g15160 vs. ExPASy TrEMBL
Match: A0A6J1ITA5 (protein CRABS CLAW-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478451 PE=3 SV=1)

HSP 1 Score: 222 bits (566), Expect = 2.21e-71
Identity = 107/112 (95.54%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MSSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTR 60
           M SS+DKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLST 
Sbjct: 1   MGSSEDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTI 60

Query: 61  PPLQGQCIDHHPLTFQPQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVK 112
           PPLQGQCIDHHPLTFQPQVGFSNDT+KGASISSTSSSSSMPNEPPSP+FVVK
Sbjct: 61  PPLQGQCIDHHPLTFQPQVGFSNDTRKGASISSTSSSSSMPNEPPSPSFVVK 112

[Close]

BLAST of Cp4.1LG01g15160 vs. ExPASy TrEMBL
Match: A0A6J1IU64 (protein CRABS CLAW-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478451 PE=3 SV=1)

HSP 1 Score: 222 bits (566), Expect = 2.52e-71
Identity = 107/112 (95.54%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MSSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTR 60
           M SS+DKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLST 
Sbjct: 1   MGSSEDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTI 60

Query: 61  PPLQGQCIDHHPLTFQPQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVK 112
           PPLQGQCIDHHPLTFQPQVGFSNDT+KGASISSTSSSSSMPNEPPSP+FVVK
Sbjct: 61  PPLQGQCIDHHPLTFQPQVGFSNDTRKGASISSTSSSSSMPNEPPSPSFVVK 112

[Close]

BLAST of Cp4.1LG01g15160 vs. ExPASy TrEMBL
Match: A0A6J1GYT3 (protein CRABS CLAW-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111458487 PE=3 SV=1)

HSP 1 Score: 218 bits (554), Expect = 1.53e-69
Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = 0


Query: 1   MSSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTR 60
           MSSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTR
Sbjct: 1   MSSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTR 60

Query: 61  PPLQGQCIDHHPLTFQPQVGFSNDTQKGASISSTSSSSS-MPNEPPSPNFVVK 112
           PPLQGQ IDHHPLTFQPQVGFS DT+KGASISSTSSSSS MPNEPPSPNFVVK
Sbjct: 61  PPLQGQRIDHHPLTFQPQVGFSYDTRKGASISSTSSSSSSMPNEPPSPNFVVK 113

[Close]

BLAST of Cp4.1LG01g15160 vs. ExPASy TrEMBL
Match: A0A6J1GXV0 (protein CRABS CLAW-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458487 PE=3 SV=1)

HSP 1 Score: 218 bits (554), Expect = 1.74e-69
Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = 0


Query: 1   MSSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTR 60
           MSSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTR
Sbjct: 1   MSSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTR 60

Query: 61  PPLQGQCIDHHPLTFQPQVGFSNDTQKGASISSTSSSSS-MPNEPPSPNFVVK 112
           PPLQGQ IDHHPLTFQPQVGFS DT+KGASISSTSSSSS MPNEPPSPNFVVK
Sbjct: 61  PPLQGQRIDHHPLTFQPQVGFSYDTRKGASISSTSSSSSSMPNEPPSPNFVVK 113

[Close]

BLAST of Cp4.1LG01g15160 vs. ExPASy TrEMBL
Match: A0A6J1FZK6 (protein CRABS CLAW OS=Cucurbita moschata OX=3662 GN=LOC111449367 PE=3 SV=1)

HSP 1 Score: 192 bits (487), Expect = 2.12e-59
Identity = 95/110 (86.36%), Postives = 103/110 (93.64%), Query Frame = 0


Query: 3   SSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPP 62
           SS+DKSSMDLVQP+DHLCYVKCNFCNT+LAVGIPCRRLL+TVTVKCG+CSNLSFLSTRPP
Sbjct: 2   SSEDKSSMDLVQPSDHLCYVKCNFCNTVLAVGIPCRRLLDTVTVKCGHCSNLSFLSTRPP 61

Query: 63  LQGQCIDHHPLTFQPQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVK 112
           LQGQCIDH PL+FQ QVGFSND +KGAS SS+SSSSSM NE PS NFVVK
Sbjct: 62  LQGQCIDH-PLSFQSQVGFSNDIRKGASTSSSSSSSSMANESPSANFVVK 110

[Close]

BLAST of Cp4.1LG01g15160 vs. TAIR 10
Match: AT1G69180.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 107.8 bits (268), Expect = 8.7e-24
Identity = 57/96 (59.38%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 17  DHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQGQCIDHHPLTFQ 76
           +HL YV+C+ CNT+LAVGIP +R+L+TVTVKCG+C NLSFL+T PPLQG    H  LT Q
Sbjct: 19  EHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNLSFLTTTPPLQG----HVSLTLQ 78

Query: 77  PQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVK 113
            Q    +D +KG+S SS+SS+SS     PSP FVVK
Sbjct: 79  MQSFGGSDYKKGSSSSSSSSTSSDQPPSPSPPFVVK 110

[Close]

BLAST of Cp4.1LG01g15160 vs. TAIR 10
Match: AT2G45190.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-10
Identity = 48/151 (31.79%), Postives = 74/151 (49.01%), Query Frame = 0


Query: 2   SSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRP 61
           S S    S D   P+DHLCYV+CNFC T+LAV +P   L +TVTV+CG C+NL  ++ R 
Sbjct: 8   SPSSAVCSPDHFSPSDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRS 67

Query: 62  -------PLQGQCIDHHPLTFQPQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVKRD 121
                   LQ Q   H    F PQ     D  +    + ++ +  M N+ P+ N +    
Sbjct: 68  YVLPASNQLQLQLGPHS--YFNPQ-----DILEELRDAPSNMNMMMMNQHPTMNDIPSFM 127

Query: 122 STHQSCQ-PRNPTSRSIQCRSKKLGKVHSKF 145
             HQ  + P+ P       + +++   +++F
Sbjct: 128 DLHQQHEIPKAPPVNRPPEKRQRVPSAYNRF 151

[Close]

BLAST of Cp4.1LG01g15160 vs. TAIR 10
Match: AT4G00180.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 61.2 bits (147), Expect = 9.3e-10
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 2  SSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNL 55
          SSS      D     D LCYV C+FC+T+LAV +P   L +TVTV+CG+CSNL
Sbjct: 8  SSSAPAFPPDHFSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNL 60

[Close]

BLAST of Cp4.1LG01g15160 vs. TAIR 10
Match: AT2G26580.1 (plant-specific transcription factor YABBY family protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-09
Identity = 36/98 (36.73%), Postives = 54/98 (55.10%), Query Frame = 0


Query: 13  VQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQGQCIDHHP 72
           V   + LCY+ CNFCN +LAV +PC  L + VTV+CG+C+NL  ++    LQ     +  
Sbjct: 5   VMATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNFQ 64

Query: 73  LT--FQPQVGFS--NDTQKGASISS-TSSSSSMPNEPP 106
            T    P+ G S  + T+  + IS+ T +   + N PP
Sbjct: 65  ATNYAVPEYGSSSRSHTKIPSRISTRTITEQRIVNRPP 102

[Close]

BLAST of Cp4.1LG01g15160 vs. TAIR 10
Match: AT2G26580.2 (plant-specific transcription factor YABBY family protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-09
Identity = 36/98 (36.73%), Postives = 54/98 (55.10%), Query Frame = 0


Query: 13  VQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQGQCIDHHP 72
           V   + LCY+ CNFCN +LAV +PC  L + VTV+CG+C+NL  ++    LQ     +  
Sbjct: 5   VMATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNFQ 64

Query: 73  LT--FQPQVGFS--NDTQKGASISS-TSSSSSMPNEPP 106
            T    P+ G S  + T+  + IS+ T +   + N PP
Sbjct: 65  ATNYAVPEYGSSSRSHTKIPSRISTRTITEQRIVNRPP 102

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g15160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L925	1.2e-22	59.38	Protein CRABS CLAW OS=Arabidopsis thaliana OX=3702 GN=CRC PE=1 SV=2	[more]
Q76EJ0	1.5e-20	52.38	Protein DROOPING LEAF OS=Oryza sativa subsp. japonica OX=39947 GN=DL PE=1 SV=1	[more]
A2X7Q3	2.4e-10	46.97	Protein YABBY 4 OS=Oryza sativa subsp. indica OX=39946 GN=YAB4 PE=3 SV=1	[more]
Q6H668	2.4e-10	46.97	Protein YABBY 4 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB4 PE=2 SV=1	[more]
O22152	2.0e-09	31.79	Axial regulator YABBY 1 OS=Arabidopsis thaliana OX=3702 GN=YAB1 PE=1 SV=1	[more]

BLAST of Cp4.1LG01g15160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515593.1	1.02e-74	100.00	protein CRABS CLAW-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023515588.1	1.16e-74	100.00	protein CRABS CLAW-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022978498.1	4.56e-71	95.54	protein CRABS CLAW-like isoform X2 [Cucurbita maxima]	[more]
XP_022978489.1	5.21e-71	95.54	protein CRABS CLAW-like isoform X1 [Cucurbita maxima]	[more]
XP_022956963.1	3.16e-69	96.46	protein CRABS CLAW-like isoform X2 [Cucurbita moschata]	[more]

BLAST of Cp4.1LG01g15160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ITA5	2.21e-71	95.54	protein CRABS CLAW-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478451 P...	[more]
A0A6J1IU64	2.52e-71	95.54	protein CRABS CLAW-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478451 P...	[more]
A0A6J1GYT3	1.53e-69	96.46	protein CRABS CLAW-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111458487...	[more]
A0A6J1GXV0	1.74e-69	96.46	protein CRABS CLAW-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458487...	[more]
A0A6J1FZK6	2.12e-59	86.36	protein CRABS CLAW OS=Cucurbita moschata OX=3662 GN=LOC111449367 PE=3 SV=1	[more]

BLAST of Cp4.1LG01g15160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G69180.1	8.7e-24	59.38	Plant-specific transcription factor YABBY family protein	[more]
AT2G45190.1	1.4e-10	31.79	Plant-specific transcription factor YABBY family protein	[more]
AT4G00180.1	9.3e-10	52.83	Plant-specific transcription factor YABBY family protein	[more]
AT2G26580.1	1.2e-09	36.73	plant-specific transcription factor YABBY family protein	[more]
AT2G26580.2	1.2e-09	36.73	plant-specific transcription factor YABBY family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006780	YABBY protein	PFAM	PF04690	YABBY	coord: 15..107 e-value: 4.9E-20 score: 72.8
IPR006780	YABBY protein	PANTHER	PTHR31675	PROTEIN YABBY 6-RELATED	coord: 8..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..132
None	No IPR available	PANTHER	PTHR31675:SF1	PROTEIN CRABS CLAW	coord: 8..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g15160.1	Cp4.1LG01g15160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010582	floral meristem determinacy
biological_process	GO:0010254	nectary development
biological_process	GO:0048479	style development
biological_process	GO:0007275	multicellular organism development
molecular_function	GO:0000976	transcription cis-regulatory region binding