Cp4.1LG01g15110 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAATCTCATGTATGCATATACTCATAAAGGTCAGGAAATACCGAAACAAATGCCTTCTTTTTTCGACAGTATGAAAGCAACGAACGTCCCGAAAATGAAAGCAACGAACGTCCCGAAAGGGTAAGTAAATGGTCGTTAAAAGTATAGGTGGTAGCTACTAATACATATCCTAAGCAGAAAAAGGTGGTGAGATTACCTACTCACTCCCAAACGCCCTTAGCCACCTGAGAGGTCAAAAAACCATGAATTTTAGTTAGCAATCACGCAGCTTTAGGCACTATAAAATGGGATGAGTATGGGCAACACTGAGTAACTCATCCTAAAAGCCTTCTTCACCAAAATTCTCTCCTCTTGCAATGAAGACTGTTTCCATGCTCCTCTGCTTCCTTTTGCTTGCCAACCTCTGCTATGCAGCAGAGCAAGAAATGGGTAAGTTGGAGGCCGCCCAAGGTACCTTCACCAACTTTTTAGGCTCATTTTGGGTCATTTTCAGGCTAAAAAATGCTTGTTGTTTTGATCATGTCTGTCTTCATTTTATGCAGGCACCAAAGGAGAAGAAGGGGAAGAGACCGAAGCAGAGAAATTGAAGCTTATTCCACACCACATACCATTCTACAAGAAGCCGCTTTTGAAGGCAGCTCCAAAGAAGCCAATTCCGCATCACCCAATCCTCAAGAAGCCATTTCCAAAGCCTCGTTATCCGCCAGTGTTCCCCACCCATCCTTGAAACAAACTATGCTCATGAGCCCTTATAATGCCATGGAATAATAAGCTTTACTGCATAGTTAAGTTTTAGAAACCAAGAGTTTATTTTGGAGTCAGCTTCCTTTGCTACTACTACTCTTCACTGTTCTTGTTCTTGTTGTGTTCAATCAAATAATAAACTATCGCTTTTTGTTTCATCATGTATGCCTTTTCATCTGTTCCCTAACCCTATAAGTTAACATGAAATAGGCTAAATTTCCGACCAACCCAACTCCCAATCACTCCAAAAATTTGGTTGGACTACGAGCTTATTTGGATTGAGTTTGATTCAAATAAATGAAGATTCTGTAGATTGGGTTGATTCCTGTCCGCTCTCCTAAAACTAGATTGGGCTGAACAGAACCAACTCGAATTTATTGTTAATTTTAAAAGATCTATTGAGTTGTATACATTGACATTGAGTTGTACTTCTGACCCGAACAACTCGAACCAACCCAACACAAAAATGTTATGGTTGGGTTCATTATTT GAATCTCATGTATGCATATACTCATAAAGGTCAGGAAATACCGAAACAAATGCCTTCTTTTTTCGACAGTATGAAAGCAACGAACGTCCCGAAAATGAAAGCAACGAACGTCCCGAAAGGGTAAGTAAATGGTCGTTAAAAGTATAGGTGGTAGCTACTAATACATATCCTAAGCAGAAAAAGGTGGTGAGATTACCTACTCACTCCCAAACGCCCTTAGCCACCTGAGAGGTCAAAAAACCATGAATTTTAGTTAGCAATCACGCAGCTTTAGGCACTATAAAATGGGATGAGTATGGGCAACACTGAGTAACTCATCCTAAAAGCCTTCTTCACCAAAATTCTCTCCTCTTGCAATGAAGACTGTTTCCATGCTCCTCTGCTTCCTTTTGCTTGCCAACCTCTGCTATGCAGCAGAGCAAGAAATGGGTAAGTTGGAGGCCGCCCAAGGCACCAAAGGAGAAGAAGGGGAAGAGACCGAAGCAGAGAAATTGAAGCTTATTCCACACCACATACCATTCTACAAGAAGCCGCTTTTGAAGGCAGCTCCAAAGAAGCCAATTCCGCATCACCCAATCCTCAAGAAGCCATTTCCAAAGCCTCGTTATCCGCCAGTGTTCCCCACCCATCCTTGAAACAAACTATGCTCATGAGCCCTTATAATGCCATGGAATAATAAGCTTTACTGCATAGTTAAGTTTTAGAAACCAAGAGTTTATTTTGGAGTCAGCTTCCTTTGCTACTACTACTCTTCACTGTTCTTGTTCTTGTTGTGTTCAATCAAATAATAAACTATCGCTTTTTGTTTCATCATGTATGCCTTTTCATCTGTTCCCTAACCCTATAAGTTAACATGAAATAGGCTAAATTTCCGACCAACCCAACTCCCAATCACTCCAAAAATTTGGTTGGACTACGAGCTTATTTGGATTGAGTTTGATTCAAATAAATGAAGATTCTGTAGATTGGGTTGATTCCTGTCCGCTCTCCTAAAACTAGATTGGGCTGAACAGAACCAACTCGAATTTATTGTTAATTTTAAAAGATCTATTGAGTTGTATACATTGACATTGAGTTGTACTTCTGACCCGAACAACTCGAACCAACCCAACACAAAAATGTTATGGTTGGGTTCATTATTT ATGAAGACTGTTTCCATGCTCCTCTGCTTCCTTTTGCTTGCCAACCTCTGCTATGCAGCAGAGCAAGAAATGGGTAAGTTGGAGGCCGCCCAAGGCACCAAAGGAGAAGAAGGGGAAGAGACCGAAGCAGAGAAATTGAAGCTTATTCCACACCACATACCATTCTACAAGAAGCCGCTTTTGAAGGCAGCTCCAAAGAAGCCAATTCCGCATCACCCAATCCTCAAGAAGCCATTTCCAAAGCCTCGTTATCCGCCAGTGTTCCCCACCCATCCTTGA MKTVSMLLCFLLLANLCYAAEQEMGKLEAAQGTKGEEGEETEAEKLKLIPHHIPFYKKPLLKAAPKKPIPHHPILKKPFPKPRYPPVFPTHP Homology
BLAST of Cp4.1LG01g15110 vs. NCBI nr
Match: KAG6601142.1 (hypothetical protein SDJN03_06375, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031941.1 hypothetical protein SDJN02_05983 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 181 bits (460), Expect = 1.69e-57 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0
BLAST of Cp4.1LG01g15110 vs. NCBI nr
Match: XP_022138883.1 (uncharacterized protein LOC111009954 [Momordica charantia]) HSP 1 Score: 79.7 bits (195), Expect = 1.18e-16 Identity = 46/97 (47.42%), Postives = 60/97 (61.86%), Query Frame = 0
BLAST of Cp4.1LG01g15110 vs. NCBI nr
Match: KAG6601141.1 (hypothetical protein SDJN03_06374, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031940.1 hypothetical protein SDJN02_05982, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 77.4 bits (189), Expect = 6.19e-16 Identity = 51/116 (43.97%), Postives = 62/116 (53.45%), Query Frame = 0
BLAST of Cp4.1LG01g15110 vs. NCBI nr
Match: KAE8648861.1 (hypothetical protein Csa_008879 [Cucumis sativus]) HSP 1 Score: 77.0 bits (188), Expect = 2.17e-15 Identity = 45/84 (53.57%), Postives = 53/84 (63.10%), Query Frame = 0
BLAST of Cp4.1LG01g15110 vs. NCBI nr
Match: XP_038893221.1 (uncharacterized protein LOC120082072 [Benincasa hispida]) HSP 1 Score: 73.6 bits (179), Expect = 2.52e-14 Identity = 46/115 (40.00%), Postives = 59/115 (51.30%), Query Frame = 0
BLAST of Cp4.1LG01g15110 vs. ExPASy TrEMBL
Match: A0A6J1CED0 (uncharacterized protein LOC111009954 OS=Momordica charantia OX=3673 GN=LOC111009954 PE=4 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 5.72e-17 Identity = 46/97 (47.42%), Postives = 60/97 (61.86%), Query Frame = 0
BLAST of Cp4.1LG01g15110 vs. ExPASy TrEMBL
Match: A0A0A0KRM7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623640 PE=4 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 1.88e-16 Identity = 45/84 (53.57%), Postives = 53/84 (63.10%), Query Frame = 0
BLAST of Cp4.1LG01g15110 vs. ExPASy TrEMBL
Match: A0A5D3CG71 (Annexin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002960 PE=4 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 1.05e-13 Identity = 41/83 (49.40%), Postives = 50/83 (60.24%), Query Frame = 0
BLAST of Cp4.1LG01g15110 vs. ExPASy TrEMBL
Match: A0A1S3BG81 (proline-rich 33 kDa extensin-related protein-like OS=Cucumis melo OX=3656 GN=LOC103489493 PE=4 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 1.05e-13 Identity = 41/83 (49.40%), Postives = 50/83 (60.24%), Query Frame = 0
BLAST of Cp4.1LG01g15110 vs. ExPASy TrEMBL
Match: A0A0A0KWW0 (ATP-dependent RNA helicase DBP7 OS=Cucumis sativus OX=3659 GN=Csa_5G623650 PE=4 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 3.31e-13 Identity = 51/109 (46.79%), Postives = 61/109 (55.96%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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