Cp4.1LG01g14670 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g14670
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	thioredoxin-like 3-2, chloroplastic
Location	Cp4.1LG01: 7447930 .. 7449971 (+)
RNA-Seq Expression	Cp4.1LG01g14670
Synteny	Cp4.1LG01g14670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTGGGTTTCTTAATTTTTCTTTTCCTTTTTGTTTTCTTCAACAAAATCAAATGGCGTTTCTCTCAGATTTTCCAGTTTAGGGGATCGATCGGAACAATCTCTGAACTACTCTGAATCTCCCGGTGGGACTCCACCGAAACCCTCTCTAAGCCGCCGCCGCCGTCGTCAGCTCCACCCCGATTTAACCCACCAGCCGCTGTCCTCTGAATTTTTCTCTCCTTTTTCCGTTTTCCATCTGAAATGGTGAAAGCTTTGCCTCTTCACCTCGCAAGCGTGAAATTTTTCCCCAAATTCGACGGTTCTTATGATCTTCCTTCGCTTCTCCTGCTCCCGCCCGCGAGGCTCCCCGCCTCTGGTTTCAACAAGCTTCCTCTGTCTCGAAAATTTCCGCGGATTTCCCAGAAAGTTTATGTGACTGATGAGAAGGTTTCGCTGCTTGGAGCTTGGACGCAAGAGAGTTCCCTGCAATTTCGAGATGAATCGCCTGTTTCGATGGAGCTCCAGTCCATTAGCAGCGAACTTGAATTCGATCAGGCTATTGCAGATGCGGAGGAACACAACGGGCTCGTGATTCTTGTATGGTATGCATACGTTTCTTTTGGGCTTTTCTAGGGTTTCACTGAAACAGAATAACAACCTCTGTTGTACATTAATTCTGATAATTTTCAACAGCTTTCCTTCAAGCCTTTCAAGAACATTTCTCTTTGTTTTACCTTGTTTCGTTGAAAATTGAGTTTATGTGGATATGTAGGATGGCTAACTGGTGCAGAAATTATATTTATTTGATACCCCAATTGGAAAGATTGGCTGCTGATTATTACCCCAGGTTAGCTCTTAGCCCATTTCTTTTGACCAACCAAATGGCTAAGTCCTTATTGAAGTTGTGCTTGTTCTTGATGAATTTTAGATTGCAGTTCTACTGCATTAATGTCAATATGGTGCCACACAAGCTAGTTGTTCGTGCCGGATTAGCTGTAAGTTCCTTCCAAAGCTTGCAAATTATAGTGATCTTCTTTGGGTAGGATTTTACTTGAGTTCTGTTTACAATGGAAATTAGAACTTGTGTTTCATTACCTTTAGGAACGTTTCCAATTTGCAGTTTGAACATAGGAGTCCAAGGACATGTTGAGCTTGTGTTACTTTGATGGATGAGTTGATTGAATAAACTGCTTGATCTGTTTTATCTTTTCATTTATTGTTTGCGAACATGAAATCTTTATGTGAGATCCCACGTCGATCGGAGAGGGGAACGAAACATTTCTTATAAGAGTGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAACTTTGATAGGAAGCTTGAGAGGGAAAGTCCAAAGAGAACAATATTTTTAGCGGTGGGCTTAGGCTTTGGCTTAGGCTATTGCACTTTCTATACTTGGTTGAGTGATACATGTGACATTATCATTTTGATTTCTTGCATTTTCTCGTGTATCTCAACCGTTCTTCTTCGAATCTTCCAGAAGATGCCAGCTATTCAGGTGATTTTCTTCACAATCAGATATGTTAACGTTGGAAACCTTCATCTCTTCTAATATCAAGATCTTGATTATGTTTATTGCAGCTATGGAAGGATGGCAAGAAACAAGACGAGGTGATTGGTCTCTACAAAGCATATTTAGTTGTCAACGACGTTCAGAAAATGATCGAACGTGAGCTAACAGGCGAGTGACTTACGATTCATTTTTACCCTCATCCTCTTACCCACTTAGTGGTATTTGAATTGATTGATAGCATCTCATAGAAATTCCCTTCTTCTTACATTCATCAACATAAAGAACACGGCCTGACTAGCCTTTTGAAGCCTTCTGAAAATATTAGTTGGTTGCTTCAGTATGATAGTTGTCTCGAAATATCGGTTGTTCTCGGTTATAATAATTGTTCAAAATTGATGGTTGTCTTAATAGAATGGACTTTCCTGTAATGATAGTTGTCTCAAAAAGGTCAGTTGTGTCGATTAATAATTGTTTAGACATATTGGTTGCCTCAAGTGAACTTATAATGCTCATCTCAAAAGATG

mRNA sequence

TATTGGGTTTCTTAATTTTTCTTTTCCTTTTTGTTTTCTTCAACAAAATCAAATGGCGTTTCTCTCAGATTTTCCAGTTTAGGGGATCGATCGGAACAATCTCTGAACTACTCTGAATCTCCCGGTGGGACTCCACCGAAACCCTCTCTAAGCCGCCGCCGCCGTCGTCAGCTCCACCCCGATTTAACCCACCAGCCGCTGTCCTCTGAATTTTTCTCTCCTTTTTCCGTTTTCCATCTGAAATGGTGAAAGCTTTGCCTCTTCACCTCGCAAGCGTGAAATTTTTCCCCAAATTCGACGGTTCTTATGATCTTCCTTCGCTTCTCCTGCTCCCGCCCGCGAGGCTCCCCGCCTCTGGTTTCAACAAGCTTCCTCTGTCTCGAAAATTTCCGCGGATTTCCCAGAAAGTTTATGTGACTGATGAGAAGGTTTCGCTGCTTGGAGCTTGGACGCAAGAGAGTTCCCTGCAATTTCGAGATGAATCGCCTGTTTCGATGGAGCTCCAGTCCATTAGCAGCGAACTTGAATTCGATCAGGCTATTGCAGATGCGGAGGAACACAACGGGCTCGTGATTCTTGTATGGATGGCTAACTGGTGCAGAAATTATATTTATTTGATACCCCAATTGGAAAGATTGGCTGCTGATTATTACCCCAGATTGCAGTTCTACTGCATTAATGTCAATATGGTGCCACACAAGCTAGTTGTTCGTGCCGGATTAGCTCTATGGAAGGATGGCAAGAAACAAGACGAGGTGATTGGTCTCTACAAAGCATATTTAGTTGTCAACGACGTTCAGAAAATGATCGAACGTGAGCTAACAGGCGAGTGACTTACGATTCATTTTTACCCTCATCCTCTTACCCACTTAGTGGTATTTGAATTGATTGATAGCATCTCATAGAAATTCCCTTCTTCTTACATTCATCAACATAAAGAACACGGCCTGACTAGCCTTTTGAAGCCTTCTGAAAATATTAGTTGGTTGCTTCAGTATGATAGTTGTCTCGAAATATCGGTTGTTCTCGGTTATAATAATTGTTCAAAATTGATGGTTGTCTTAATAGAATGGACTTTCCTGTAATGATAGTTGTCTCAAAAAGGTCAGTTGTGTCGATTAATAATTGTTTAGACATATTGGTTGCCTCAAGTGAACTTATAATGCTCATCTCAAAAGATG

Coding sequence (CDS)

ATGGTGAAAGCTTTGCCTCTTCACCTCGCAAGCGTGAAATTTTTCCCCAAATTCGACGGTTCTTATGATCTTCCTTCGCTTCTCCTGCTCCCGCCCGCGAGGCTCCCCGCCTCTGGTTTCAACAAGCTTCCTCTGTCTCGAAAATTTCCGCGGATTTCCCAGAAAGTTTATGTGACTGATGAGAAGGTTTCGCTGCTTGGAGCTTGGACGCAAGAGAGTTCCCTGCAATTTCGAGATGAATCGCCTGTTTCGATGGAGCTCCAGTCCATTAGCAGCGAACTTGAATTCGATCAGGCTATTGCAGATGCGGAGGAACACAACGGGCTCGTGATTCTTGTATGGATGGCTAACTGGTGCAGAAATTATATTTATTTGATACCCCAATTGGAAAGATTGGCTGCTGATTATTACCCCAGATTGCAGTTCTACTGCATTAATGTCAATATGGTGCCACACAAGCTAGTTGTTCGTGCCGGATTAGCTCTATGGAAGGATGGCAAGAAACAAGACGAGGTGATTGGTCTCTACAAAGCATATTTAGTTGTCAACGACGTTCAGAAAATGATCGAACGTGAGCTAACAGGCGAGTGA

Protein sequence

MVKALPLHLASVKFFPKFDGSYDLPSLLLLPPARLPASGFNKLPLSRKFPRISQKVYVTDEKVSLLGAWTQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCRNYIYLIPQLERLAADYYPRLQFYCINVNMVPHKLVVRAGLALWKDGKKQDEVIGLYKAYLVVNDVQKMIERELTGE

Homology

[Close]

BLAST of Cp4.1LG01g14670 vs. ExPASy Swiss-Prot
Match: Q8VZT6 (Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=WCRKC2 PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.9e-36
Identity = 78/170 (45.88%), Postives = 116/170 (68.24%), Query Frame = 0


Query: 29  LLPPARLPASGFNKLPLSRKFPRISQKVYVTDEKVSLLGAWTQESSLQFRDESPVSMELQ 88
           L+PP R  +S F++ P + K+   + K+ +  E++  +    Q+  LQ  D+SPVS+EL 
Sbjct: 21  LVPPYRQTSSSFSR-PRNFKYHSFTDKICLAAERIRAVDIQKQDGGLQELDDSPVSVELG 80

Query: 89  SISSELEFDQAIADAEEHNGLVILVWMANWCRNYIYLIPQLERLAADYYPRLQFYCINVN 148
            I  E  FDQ + DA++    V++VWMA WCR  IYL P+LE+LAA++YPRL+FY ++VN
Sbjct: 81  PICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLRFYHVDVN 140

Query: 149 MVPHKLVVRAG------LALWKDGKKQDEVIGLYKAYLVVNDVQKMIERE 193
            VP++LV RAG      + LW+DG+KQ EVIG +KA+ VVN+V++MIE +
Sbjct: 141 AVPYRLVSRAGVTKMPTIQLWRDGQKQAEVIGGHKAHFVVNEVREMIEND 189

[Close]

BLAST of Cp4.1LG01g14670 vs. ExPASy Swiss-Prot
Match: Q9FG36 (Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=WCRKC1 PE=2 SV=3)

HSP 1 Score: 97.1 bits (240), Expect = 2.4e-19
Identity = 45/116 (38.79%), Postives = 78/116 (67.24%), Query Frame = 0


Query: 82  PVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCRNYIYLIPQLERLAADYYPRLQ 141
           P ++E++ I++  E D  ++ A + +  +I+ WMA+WCR  IYL P+LE+LAA+Y  R +
Sbjct: 93  PTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAK 152

Query: 142 FYCINVNMVPHKLVVRAGLA------LWKDGKKQDEVIGLYKAYLVVNDVQKMIER 192
           FY ++VN VP  LV R  ++      LWK+ + ++EVIG +K +LV+ +V+++I +
Sbjct: 153 FYYVDVNKVPQTLVKRGNISKMPTIQLWKEDEMKEEVIGGHKGWLVIEEVRELINK 208

[Close]

BLAST of Cp4.1LG01g14670 vs. ExPASy Swiss-Prot
Match: Q6Z7L3 (Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0774100 PE=3 SV=2)

HSP 1 Score: 89.7 bits (221), Expect = 3.9e-17
Identity = 45/113 (39.82%), Postives = 76/113 (67.26%), Query Frame = 0


Query: 85  MELQSISSELEFDQAIADAEEHNGLVILVWMANWCRNYIYLIPQLERLAADYYPRLQFYC 144
           +E++ I S  + D A+  + E+   +I+ WMA+WCR  IYL P+LE++A + +P ++FY 
Sbjct: 80  VEMEEIDSMEKLDDALRWSVENKQPIIIDWMASWCRKCIYLKPRLEKIAGE-FPGVRFYF 139

Query: 145 INVNMVPHKLVVRAGLA------LWKDGKKQDEVIGLYKAYLVVNDVQKMIER 192
           ++VN VP  +V R  +       LWKDG+   EVIG +KA+LV+++V++MI++
Sbjct: 140 VDVNKVPQTVVKRGNITKMPTIQLWKDGEWAAEVIGGHKAWLVMDEVREMIQK 191

[Close]

BLAST of Cp4.1LG01g14670 vs. NCBI nr
Match: XP_023533174.1 (thioredoxin-like 3-2, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 389 bits (998), Expect = 4.43e-136
Identity = 196/202 (97.03%), Postives = 196/202 (97.03%), Query Frame = 0


Query: 1   MVKALPLHLASVKFFPKFDGSYDLPSLLLLPPARLPASGFNKLPLSRKFPRISQKVYVTD 60
           MVKALPLHLASVKFFPKFDGSYDLPSLLLLPPARLPASGFNKLPLSRKFPRISQKVYVTD
Sbjct: 1   MVKALPLHLASVKFFPKFDGSYDLPSLLLLPPARLPASGFNKLPLSRKFPRISQKVYVTD 60

Query: 61  EKVSLLGAWTQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120
           EKVSLLGAWTQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR
Sbjct: 61  EKVSLLGAWTQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120

Query: 121 NYIYLIPQLERLAADYYPRLQFYCINVNMVPHKLVVRAGLA------LWKDGKKQDEVIG 180
           NYIYLIPQLERLAADYYPRLQFYCINVNMVPHKLVVRAGLA      LWKDGKKQDEVIG
Sbjct: 121 NYIYLIPQLERLAADYYPRLQFYCINVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVIG 180

Query: 181 LYKAYLVVNDVQKMIERELTGE 196
           LYKAYLVVNDVQKMIERELTGE
Sbjct: 181 LYKAYLVVNDVQKMIERELTGE 202

[Close]

BLAST of Cp4.1LG01g14670 vs. NCBI nr
Match: XP_023533184.1 (thioredoxin-like 3-2, chloroplastic isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 384 bits (986), Expect = 2.89e-134
Identity = 194/200 (97.00%), Postives = 194/200 (97.00%), Query Frame = 0


Query: 1   MVKALPLHLASVKFFPKFDGSYDLPSLLLLPPARLPASGFNKLPLSRKFPRISQKVYVTD 60
           MVKALPLHLASVKFFPKFDGSYDLPSLLLLPPARLPASGFNKLPLSRKFPRISQKVYVTD
Sbjct: 1   MVKALPLHLASVKFFPKFDGSYDLPSLLLLPPARLPASGFNKLPLSRKFPRISQKVYVTD 60

Query: 61  EKVSLLGAWTQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120
           EKVSLLGAWTQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR
Sbjct: 61  EKVSLLGAWTQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120

Query: 121 NYIYLIPQLERLAADYYPRLQFYCINVNMVPHKLVVRAGLA------LWKDGKKQDEVIG 180
           NYIYLIPQLERLAADYYPRLQFYCINVNMVPHKLVVRAGLA      LWKDGKKQDEVIG
Sbjct: 121 NYIYLIPQLERLAADYYPRLQFYCINVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVIG 180

Query: 181 LYKAYLVVNDVQKMIERELT 194
           LYKAYLVVNDVQKMIERELT
Sbjct: 181 LYKAYLVVNDVQKMIERELT 200

[Close]

BLAST of Cp4.1LG01g14670 vs. NCBI nr
Match: XP_023533166.1 (thioredoxin-like 3-2, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 384 bits (986), Expect = 5.69e-134
Identity = 194/200 (97.00%), Postives = 194/200 (97.00%), Query Frame = 0


Query: 1   MVKALPLHLASVKFFPKFDGSYDLPSLLLLPPARLPASGFNKLPLSRKFPRISQKVYVTD 60
           MVKALPLHLASVKFFPKFDGSYDLPSLLLLPPARLPASGFNKLPLSRKFPRISQKVYVTD
Sbjct: 1   MVKALPLHLASVKFFPKFDGSYDLPSLLLLPPARLPASGFNKLPLSRKFPRISQKVYVTD 60

Query: 61  EKVSLLGAWTQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120
           EKVSLLGAWTQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR
Sbjct: 61  EKVSLLGAWTQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120

Query: 121 NYIYLIPQLERLAADYYPRLQFYCINVNMVPHKLVVRAGLA------LWKDGKKQDEVIG 180
           NYIYLIPQLERLAADYYPRLQFYCINVNMVPHKLVVRAGLA      LWKDGKKQDEVIG
Sbjct: 121 NYIYLIPQLERLAADYYPRLQFYCINVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVIG 180

Query: 181 LYKAYLVVNDVQKMIERELT 194
           LYKAYLVVNDVQKMIERELT
Sbjct: 181 LYKAYLVVNDVQKMIERELT 200

[Close]

BLAST of Cp4.1LG01g14670 vs. NCBI nr
Match: KAG7031972.1 (Thioredoxin-like 3-2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 369 bits (947), Expect = 2.64e-128
Identity = 187/202 (92.57%), Postives = 190/202 (94.06%), Query Frame = 0


Query: 1   MVKALPLHLASVKFFPKFDGSYDLPSLLLLPPARLPASGFNKLPLSRKFPRISQKVYVTD 60
           MVKALPLH+ SVK FPKFDGS+DLPSL LLPPARLPAS FNKLPLSRKFP +SQKVYVTD
Sbjct: 1   MVKALPLHIGSVKIFPKFDGSHDLPSLPLLPPARLPASCFNKLPLSRKFPPLSQKVYVTD 60

Query: 61  EKVSLLGAWTQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120
           EKVSLLGAWTQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR
Sbjct: 61  EKVSLLGAWTQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120

Query: 121 NYIYLIPQLERLAADYYPRLQFYCINVNMVPHKLVVRAGLA------LWKDGKKQDEVIG 180
           NYIYLIPQLERLAADYYPRLQFYCINVNMVPHKLVVRAGLA      LWKD KKQDEVIG
Sbjct: 121 NYIYLIPQLERLAADYYPRLQFYCINVNMVPHKLVVRAGLAKMPAIQLWKDCKKQDEVIG 180

Query: 181 LYKAYLVVNDVQKMIERELTGE 196
           LYKAYLVVNDVQKMIERELTGE
Sbjct: 181 LYKAYLVVNDVQKMIERELTGE 202

[Close]

BLAST of Cp4.1LG01g14670 vs. NCBI nr
Match: XP_022969531.1 (thioredoxin-like 3-2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 368 bits (944), Expect = 7.57e-128
Identity = 186/202 (92.08%), Postives = 190/202 (94.06%), Query Frame = 0


Query: 1   MVKALPLHLASVKFFPKFDGSYDLPSLLLLPPARLPASGFNKLPLSRKFPRISQKVYVTD 60
           MVKALPLHL SVK FPKFDGS+DLPSL LLPPARLPASGFNKLPLSRKFP +SQKVYVTD
Sbjct: 1   MVKALPLHLGSVKIFPKFDGSFDLPSLPLLPPARLPASGFNKLPLSRKFPPLSQKVYVTD 60

Query: 61  EKVSLLGAWTQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120
           EKVSLLGAWTQESSL+FRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR
Sbjct: 61  EKVSLLGAWTQESSLKFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120

Query: 121 NYIYLIPQLERLAADYYPRLQFYCINVNMVPHKLVVRAGLA------LWKDGKKQDEVIG 180
           NYIYLIPQLERLAADY PRLQFYCI+VNMVPHKLVVRAGLA      LWKDGKKQDEVIG
Sbjct: 121 NYIYLIPQLERLAADYCPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVIG 180

Query: 181 LYKAYLVVNDVQKMIERELTGE 196
           LYKAYLVVNDVQKMIEREL GE
Sbjct: 181 LYKAYLVVNDVQKMIERELKGE 202

[Close]

BLAST of Cp4.1LG01g14670 vs. ExPASy TrEMBL
Match: A0A6J1HY22 (thioredoxin-like 3-2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111468483 PE=4 SV=1)

HSP 1 Score: 368 bits (944), Expect = 3.67e-128
Identity = 186/202 (92.08%), Postives = 190/202 (94.06%), Query Frame = 0


Query: 1   MVKALPLHLASVKFFPKFDGSYDLPSLLLLPPARLPASGFNKLPLSRKFPRISQKVYVTD 60
           MVKALPLHL SVK FPKFDGS+DLPSL LLPPARLPASGFNKLPLSRKFP +SQKVYVTD
Sbjct: 1   MVKALPLHLGSVKIFPKFDGSFDLPSLPLLPPARLPASGFNKLPLSRKFPPLSQKVYVTD 60

Query: 61  EKVSLLGAWTQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120
           EKVSLLGAWTQESSL+FRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR
Sbjct: 61  EKVSLLGAWTQESSLKFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120

Query: 121 NYIYLIPQLERLAADYYPRLQFYCINVNMVPHKLVVRAGLA------LWKDGKKQDEVIG 180
           NYIYLIPQLERLAADY PRLQFYCI+VNMVPHKLVVRAGLA      LWKDGKKQDEVIG
Sbjct: 121 NYIYLIPQLERLAADYCPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVIG 180

Query: 181 LYKAYLVVNDVQKMIERELTGE 196
           LYKAYLVVNDVQKMIEREL GE
Sbjct: 181 LYKAYLVVNDVQKMIERELKGE 202

[Close]

BLAST of Cp4.1LG01g14670 vs. ExPASy TrEMBL
Match: A0A6J1GZA8 (thioredoxin-like 3-2, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111458591 PE=4 SV=1)

HSP 1 Score: 357 bits (917), Expect = 6.35e-124
Identity = 183/200 (91.50%), Postives = 185/200 (92.50%), Query Frame = 0


Query: 1   MVKALPLHLASVKFFPKFDGSYDLPSLLLLPPARLPASGFNKLPLSRKFPRISQKVYVTD 60
           MVKALPLHL SVK FPKFD SYDLPSL LLPPARLPA GFNKL LSRKFP +SQKVYVTD
Sbjct: 1   MVKALPLHLGSVKIFPKFDSSYDLPSLPLLPPARLPAYGFNKLSLSRKFPPLSQKVYVTD 60

Query: 61  EKVSLLGAWTQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120
           EKVSLLGA TQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR
Sbjct: 61  EKVSLLGARTQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120

Query: 121 NYIYLIPQLERLAADYYPRLQFYCINVNMVPHKLVVRAGLA------LWKDGKKQDEVIG 180
           NYIYLIPQLERLAADYYPRLQFYCI+VNMVPHKLVVR GLA      LWKDGKKQDEVIG
Sbjct: 121 NYIYLIPQLERLAADYYPRLQFYCIDVNMVPHKLVVRVGLAKMPAIQLWKDGKKQDEVIG 180

Query: 181 LYKAYLVVNDVQKMIERELT 194
           LYKAYLVVNDVQKMIERELT
Sbjct: 181 LYKAYLVVNDVQKMIERELT 200

[Close]

BLAST of Cp4.1LG01g14670 vs. ExPASy TrEMBL
Match: A0A6J1GY93 (thioredoxin-like 3-2, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458591 PE=4 SV=1)

HSP 1 Score: 357 bits (917), Expect = 8.73e-124
Identity = 183/200 (91.50%), Postives = 185/200 (92.50%), Query Frame = 0


Query: 1   MVKALPLHLASVKFFPKFDGSYDLPSLLLLPPARLPASGFNKLPLSRKFPRISQKVYVTD 60
           MVKALPLHL SVK FPKFD SYDLPSL LLPPARLPA GFNKL LSRKFP +SQKVYVTD
Sbjct: 1   MVKALPLHLGSVKIFPKFDSSYDLPSLPLLPPARLPAYGFNKLSLSRKFPPLSQKVYVTD 60

Query: 61  EKVSLLGAWTQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120
           EKVSLLGA TQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR
Sbjct: 61  EKVSLLGARTQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120

Query: 121 NYIYLIPQLERLAADYYPRLQFYCINVNMVPHKLVVRAGLA------LWKDGKKQDEVIG 180
           NYIYLIPQLERLAADYYPRLQFYCI+VNMVPHKLVVR GLA      LWKDGKKQDEVIG
Sbjct: 121 NYIYLIPQLERLAADYYPRLQFYCIDVNMVPHKLVVRVGLAKMPAIQLWKDGKKQDEVIG 180

Query: 181 LYKAYLVVNDVQKMIERELT 194
           LYKAYLVVNDVQKMIERELT
Sbjct: 181 LYKAYLVVNDVQKMIERELT 200

[Close]

BLAST of Cp4.1LG01g14670 vs. ExPASy TrEMBL
Match: A0A1S3BGW0 (thioredoxin-like 3-2, chloroplastic isoform X9 OS=Cucumis melo OX=3656 GN=LOC103489448 PE=4 SV=1)

HSP 1 Score: 323 bits (827), Expect = 2.40e-110
Identity = 165/201 (82.09%), Postives = 175/201 (87.06%), Query Frame = 0


Query: 1   MVKALPLHLASVKFFPKFDGSYDLPSLLLLPPARLPASGFNKLPLSRKFPRISQKVYVTD 60
           MVKALPLHL  VK FPKFD S+DLP    L  ARLP SGFN+LPLSRKFP I QKV  T 
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKVSLLGAWTQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120
           EK SLLGAWTQ+S+LQFRDESPVS+EL+SISSELEFD+AIADAEE N LVILVWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLIPQLERLAADYYPRLQFYCINVNMVPHKLVVRAGLA-----LWKDGKKQDEVIGL 180
           NYIYL PQLERLAADYYPRLQFYCI+VNMVPHKLVVRAGLA     LWKDGKKQDEV+GL
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAMPAIQLWKDGKKQDEVVGL 180

Query: 181 YKAYLVVNDVQKMIERELTGE 196
           YKAYLVVNDV+KMIERELT E
Sbjct: 181 YKAYLVVNDVRKMIERELTDE 201

[Close]

BLAST of Cp4.1LG01g14670 vs. ExPASy TrEMBL
Match: A0A5D3CG32 (Thioredoxin-like 3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002530 PE=4 SV=1)

HSP 1 Score: 322 bits (826), Expect = 3.53e-110
Identity = 165/202 (81.68%), Postives = 175/202 (86.63%), Query Frame = 0


Query: 1   MVKALPLHLASVKFFPKFDGSYDLPSLLLLPPARLPASGFNKLPLSRKFPRISQKVYVTD 60
           MVKALPLHL  VK FPKFD S+DLP    L  ARLP SGFN+LPLSRKFP I QKV  T 
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKVSLLGAWTQESSLQFRDESPVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCR 120
           EK SLLGAWTQ+S+LQFRDESPVS+EL+SISSELEFD+AIADAEE N LVILVWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLIPQLERLAADYYPRLQFYCINVNMVPHKLVVRAGLA------LWKDGKKQDEVIG 180
           NYIYL PQLERLAADYYPRLQFYCI+VNMVPHKLVVRAGLA      LWKDGKKQDEV+G
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVVG 180

Query: 181 LYKAYLVVNDVQKMIERELTGE 196
           LYKAYLVVNDV+KMIERELT E
Sbjct: 181 LYKAYLVVNDVRKMIERELTDE 202

[Close]

BLAST of Cp4.1LG01g14670 vs. TAIR 10
Match: AT5G04260.1 (WCRKC thioredoxin 2 )

HSP 1 Score: 152.5 bits (384), Expect = 3.5e-37
Identity = 78/170 (45.88%), Postives = 116/170 (68.24%), Query Frame = 0


Query: 29  LLPPARLPASGFNKLPLSRKFPRISQKVYVTDEKVSLLGAWTQESSLQFRDESPVSMELQ 88
           L+PP R  +S F++ P + K+   + K+ +  E++  +    Q+  LQ  D+SPVS+EL 
Sbjct: 21  LVPPYRQTSSSFSR-PRNFKYHSFTDKICLAAERIRAVDIQKQDGGLQELDDSPVSVELG 80

Query: 89  SISSELEFDQAIADAEEHNGLVILVWMANWCRNYIYLIPQLERLAADYYPRLQFYCINVN 148
            I  E  FDQ + DA++    V++VWMA WCR  IYL P+LE+LAA++YPRL+FY ++VN
Sbjct: 81  PICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLRFYHVDVN 140

Query: 149 MVPHKLVVRAG------LALWKDGKKQDEVIGLYKAYLVVNDVQKMIERE 193
            VP++LV RAG      + LW+DG+KQ EVIG +KA+ VVN+V++MIE +
Sbjct: 141 AVPYRLVSRAGVTKMPTIQLWRDGQKQAEVIGGHKAHFVVNEVREMIEND 189

[Close]

BLAST of Cp4.1LG01g14670 vs. TAIR 10
Match: AT5G06690.1 (WCRKC thioredoxin 1 )

HSP 1 Score: 97.1 bits (240), Expect = 1.7e-20
Identity = 45/116 (38.79%), Postives = 78/116 (67.24%), Query Frame = 0


Query: 82  PVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCRNYIYLIPQLERLAADYYPRLQ 141
           P ++E++ I++  E D  ++ A + +  +I+ WMA+WCR  IYL P+LE+LAA+Y  R +
Sbjct: 93  PTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAK 152

Query: 142 FYCINVNMVPHKLVVRAGLA------LWKDGKKQDEVIGLYKAYLVVNDVQKMIER 192
           FY ++VN VP  LV R  ++      LWK+ + ++EVIG +K +LV+ +V+++I +
Sbjct: 153 FYYVDVNKVPQTLVKRGNISKMPTIQLWKEDEMKEEVIGGHKGWLVIEEVRELINK 208

[Close]

BLAST of Cp4.1LG01g14670 vs. TAIR 10
Match: AT5G06690.2 (WCRKC thioredoxin 1 )

HSP 1 Score: 75.1 bits (183), Expect = 7.0e-14
Identity = 33/81 (40.74%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 82  PVSMELQSISSELEFDQAIADAEEHNGLVILVWMANWCRNYIYLIPQLERLAADYYPRLQ 141
           P ++E++ I++  E D  ++ A + +  +I+ WMA+WCR  IYL P+LE+LAA+Y  R +
Sbjct: 93  PTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAK 152

Query: 142 FYCINVNMVPHKLVVRAGLAL 163
           FY ++VN VP  LV R  +++
Sbjct: 153 FYYVDVNKVPQTLVKRGNISV 173

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g14670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZT6	4.9e-36	45.88	Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=WCRKC2 PE...	[more]
Q9FG36	2.4e-19	38.79	Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=WCRKC1 PE...	[more]
Q6Z7L3	3.9e-17	39.82	Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]

BLAST of Cp4.1LG01g14670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023533174.1	4.43e-136	97.03	thioredoxin-like 3-2, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023533184.1	2.89e-134	97.00	thioredoxin-like 3-2, chloroplastic isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_023533166.1	5.69e-134	97.00	thioredoxin-like 3-2, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAG7031972.1	2.64e-128	92.57	Thioredoxin-like 3-2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022969531.1	7.57e-128	92.08	thioredoxin-like 3-2, chloroplastic [Cucurbita maxima]	[more]

BLAST of Cp4.1LG01g14670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HY22	3.67e-128	92.08	thioredoxin-like 3-2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111468483 ...	[more]
A0A6J1GZA8	6.35e-124	91.50	thioredoxin-like 3-2, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1GY93	8.73e-124	91.50	thioredoxin-like 3-2, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A1S3BGW0	2.40e-110	82.09	thioredoxin-like 3-2, chloroplastic isoform X9 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5D3CG32	3.53e-110	81.68	Thioredoxin-like 3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475...	[more]

BLAST of Cp4.1LG01g14670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04260.1	3.5e-37	45.88	WCRKC thioredoxin 2	[more]
AT5G06690.1	1.7e-20	38.79	WCRKC thioredoxin 1	[more]
AT5G06690.2	7.0e-14	40.74	WCRKC thioredoxin 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 74..188 e-value: 2.5E-8 score: 35.5
None	No IPR available	PANTHER	PTHR47192:SF4	THIOREDOXIN-LIKE 3-2, CHLOROPLASTIC	coord: 37..193
None	No IPR available	CDD	cd02947	TRX_family	coord: 95..190 e-value: 3.7576E-8 score: 47.1677
IPR044253	Thioredoxin-like 3-1/3-2	PANTHER	PTHR47192	THIOREDOXIN-LIKE 3-2, CHLOROPLASTIC	coord: 37..193
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 81..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g14670.1	Cp4.1LG01g14670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009570	chloroplast stroma