Cp4.1LG01g14320 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g14320
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionDNA-directed RNA polymerase I subunit like
LocationCp4.1LG01: 7659359 .. 7659853 (-)
RNA-Seq ExpressionCp4.1LG01g14320
SyntenyCp4.1LG01g14320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAATGTTAGGGTTTCTTACTATCCCATACCAATGGAAGATTTCCCCATCTCTCTCTTCATCTTCATCACCTTTTTCCCTCTCAACGAGATCTTCCCTCTCCTTTCCACTCTTCAAATTCCCTCTCCATTACTCGGAATCTCAAATTCCTGGTAAACGCAAAAGATTCACGGCGTTGGCGAGTAATAACGACAATGGATTGGGCGGGAATATCAAGGAGAGAGAAGGAGAAAGAAATGGAGCGAAGGGCTCCAATGGCGGCGATGACTTGAGGAAAGAACGAGGGCCGGTTTTCAATATCAAATGGGCTGAACTCTTAATCGATCCGGATCCTGATAACATCTTGGCCGTGGCGTTGACTGGCTTGCTTGCTTGGGCAAGTGTTCAGGTTTTGTGGCAGCTATTCTTCATCTCTTTGGCTATTTTAGTGGCTGCTCTTAAGTACTCTTTTATTGCTGCGCTTCTTATTTTCATTCTAATTACATTACTATAG

mRNA sequence

ATGACAATGTTAGGGTTTCTTACTATCCCATACCAATGGAAGATTTCCCCATCTCTCTCTTCATCTTCATCACCTTTTTCCCTCTCAACGAGATCTTCCCTCTCCTTTCCACTCTTCAAATTCCCTCTCCATTACTCGGAATCTCAAATTCCTGGTAAACGCAAAAGATTCACGGCGTTGGCGAGTAATAACGACAATGGATTGGGCGGGAATATCAAGGAGAGAGAAGGAGAAAGAAATGGAGCGAAGGGCTCCAATGGCGGCGATGACTTGAGGAAAGAACGAGGGCCGGTTTTCAATATCAAATGGGCTGAACTCTTAATCGATCCGGATCCTGATAACATCTTGGCCGTGGCGTTGACTGGCTTGCTTGCTTGGGCAAGTGTTCAGGTTTTGTGGCAGCTATTCTTCATCTCTTTGGCTATTTTAGTGGCTGCTCTTAAGTACTCTTTTATTGCTGCGCTTCTTATTTTCATTCTAATTACATTACTATAG

Coding sequence (CDS)

ATGACAATGTTAGGGTTTCTTACTATCCCATACCAATGGAAGATTTCCCCATCTCTCTCTTCATCTTCATCACCTTTTTCCCTCTCAACGAGATCTTCCCTCTCCTTTCCACTCTTCAAATTCCCTCTCCATTACTCGGAATCTCAAATTCCTGGTAAACGCAAAAGATTCACGGCGTTGGCGAGTAATAACGACAATGGATTGGGCGGGAATATCAAGGAGAGAGAAGGAGAAAGAAATGGAGCGAAGGGCTCCAATGGCGGCGATGACTTGAGGAAAGAACGAGGGCCGGTTTTCAATATCAAATGGGCTGAACTCTTAATCGATCCGGATCCTGATAACATCTTGGCCGTGGCGTTGACTGGCTTGCTTGCTTGGGCAAGTGTTCAGGTTTTGTGGCAGCTATTCTTCATCTCTTTGGCTATTTTAGTGGCTGCTCTTAAGTACTCTTTTATTGCTGCGCTTCTTATTTTCATTCTAATTACATTACTATAG

Protein sequence

MTMLGFLTIPYQWKISPSLSSSSSPFSLSTRSSLSFPLFKFPLHYSESQIPGKRKRFTALASNNDNGLGGNIKEREGERNGAKGSNGGDDLRKERGPVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Homology
BLAST of Cp4.1LG01g14320 vs. NCBI nr
Match: XP_023549272.1 (uncharacterized protein LOC111807677 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 304 bits (778), Expect = 1.11e-103
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0

Query: 1   MTMLGFLTIPYQWKISPSLSSSSSPFSLSTRSSLSFPLFKFPLHYSESQIPGKRKRFTAL 60
           MTMLGFLTIPYQWKISPSLSSSSSPFSLSTRSSLSFPLFKFPLHYSESQIPGKRKRFTAL
Sbjct: 1   MTMLGFLTIPYQWKISPSLSSSSSPFSLSTRSSLSFPLFKFPLHYSESQIPGKRKRFTAL 60

Query: 61  ASNNDNGLGGNIKEREGERNGAKGSNGGDDLRKERGPVFNIKWAELLIDPDPDNILAVAL 120
           ASNNDNGLGGNIKEREGERNGAKGSNGGDDLRKERGPVFNIKWAELLIDPDPDNILAVAL
Sbjct: 61  ASNNDNGLGGNIKEREGERNGAKGSNGGDDLRKERGPVFNIKWAELLIDPDPDNILAVAL 120

Query: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164
           TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164

BLAST of Cp4.1LG01g14320 vs. NCBI nr
Match: KAG7032002.1 (hypothetical protein SDJN02_06044, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 294 bits (752), Expect = 1.02e-99
Identity = 160/164 (97.56%), Postives = 160/164 (97.56%), Query Frame = 0

Query: 1   MTMLGFLTIPYQWKISPSLSSSSSPFSLSTRSSLSFPLFKFPLHYSESQIPGKRKRFTAL 60
           MTMLGFLTIPYQWKISPSL SSSSPFSLSTRSSLSF LFKFPLHY ESQIPGKRKRFTAL
Sbjct: 1   MTMLGFLTIPYQWKISPSLPSSSSPFSLSTRSSLSFSLFKFPLHYLESQIPGKRKRFTAL 60

Query: 61  ASNNDNGLGGNIKEREGERNGAKGSNGGDDLRKERGPVFNIKWAELLIDPDPDNILAVAL 120
           ASNNDNGLGGNIKEREGERNGAKGSNG DDLRKERGPVFNIKWAELLIDPDPDNILAVAL
Sbjct: 61  ASNNDNGLGGNIKEREGERNGAKGSNGDDDLRKERGPVFNIKWAELLIDPDPDNILAVAL 120

Query: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164
           TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164

BLAST of Cp4.1LG01g14320 vs. NCBI nr
Match: XP_022957096.1 (uncharacterized protein LOC111458579 [Cucurbita moschata])

HSP 1 Score: 294 bits (752), Expect = 1.02e-99
Identity = 160/164 (97.56%), Postives = 160/164 (97.56%), Query Frame = 0

Query: 1   MTMLGFLTIPYQWKISPSLSSSSSPFSLSTRSSLSFPLFKFPLHYSESQIPGKRKRFTAL 60
           MTMLGFLTIPYQWKISPSL SSSSPFSLSTRSSLSF LFKFPLHYSESQIPGKRKRFTAL
Sbjct: 1   MTMLGFLTIPYQWKISPSLPSSSSPFSLSTRSSLSFSLFKFPLHYSESQIPGKRKRFTAL 60

Query: 61  ASNNDNGLGGNIKEREGERNGAKGSNGGDDLRKERGPVFNIKWAELLIDPDPDNILAVAL 120
           ASNNDNGLGGNIKEREGERNGAKGS G DDLRKERGPVFNIKWAELLIDPDPDNILAVAL
Sbjct: 61  ASNNDNGLGGNIKEREGERNGAKGSKGDDDLRKERGPVFNIKWAELLIDPDPDNILAVAL 120

Query: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164
           TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164

BLAST of Cp4.1LG01g14320 vs. NCBI nr
Match: XP_022993576.1 (uncharacterized protein LOC111489528 [Cucurbita maxima])

HSP 1 Score: 290 bits (741), Expect = 4.85e-98
Identity = 158/164 (96.34%), Postives = 158/164 (96.34%), Query Frame = 0

Query: 1   MTMLGFLTIPYQWKISPSLSSSSSPFSLSTRSSLSFPLFKFPLHYSESQIPGKRKRFTAL 60
           MTMLGFLTIPYQWKISPSLSSSSSPF LSTRS LSFPLFKFPLHYSESQI GKRKRF AL
Sbjct: 1   MTMLGFLTIPYQWKISPSLSSSSSPFPLSTRSFLSFPLFKFPLHYSESQISGKRKRFAAL 60

Query: 61  ASNNDNGLGGNIKEREGERNGAKGSNGGDDLRKERGPVFNIKWAELLIDPDPDNILAVAL 120
           ASNNDNGLGGNIKEREGERNGAKGS G DDLRKERGPVFNIKWAELLIDPDPDNILAVAL
Sbjct: 61  ASNNDNGLGGNIKEREGERNGAKGSKGDDDLRKERGPVFNIKWAELLIDPDPDNILAVAL 120

Query: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164
           TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164

BLAST of Cp4.1LG01g14320 vs. NCBI nr
Match: KAG6601207.1 (hypothetical protein SDJN03_06440, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 250 bits (638), Expect = 3.86e-82
Identity = 127/130 (97.69%), Postives = 127/130 (97.69%), Query Frame = 0

Query: 1   MTMLGFLTIPYQWKISPSLSSSSSPFSLSTRSSLSFPLFKFPLHYSESQIPGKRKRFTAL 60
           MTMLGFLTIPYQWKISPSL SSSSPFSLSTRSS SFPLFKFPLHYSESQIPGKRKRFTAL
Sbjct: 1   MTMLGFLTIPYQWKISPSLPSSSSPFSLSTRSSFSFPLFKFPLHYSESQIPGKRKRFTAL 60

Query: 61  ASNNDNGLGGNIKEREGERNGAKGSNGGDDLRKERGPVFNIKWAELLIDPDPDNILAVAL 120
           ASNNDNGLGGNIKEREGERNGAKGSNG DDLRKERGPVFNIKWAELLIDPDPDNILAVAL
Sbjct: 61  ASNNDNGLGGNIKEREGERNGAKGSNGDDDLRKERGPVFNIKWAELLIDPDPDNILAVAL 120

Query: 121 TGLLAWASVQ 130
           TGLLAWASVQ
Sbjct: 121 TGLLAWASVQ 130

BLAST of Cp4.1LG01g14320 vs. ExPASy TrEMBL
Match: A0A6J1GYA2 (uncharacterized protein LOC111458579 OS=Cucurbita moschata OX=3662 GN=LOC111458579 PE=4 SV=1)

HSP 1 Score: 294 bits (752), Expect = 4.94e-100
Identity = 160/164 (97.56%), Postives = 160/164 (97.56%), Query Frame = 0

Query: 1   MTMLGFLTIPYQWKISPSLSSSSSPFSLSTRSSLSFPLFKFPLHYSESQIPGKRKRFTAL 60
           MTMLGFLTIPYQWKISPSL SSSSPFSLSTRSSLSF LFKFPLHYSESQIPGKRKRFTAL
Sbjct: 1   MTMLGFLTIPYQWKISPSLPSSSSPFSLSTRSSLSFSLFKFPLHYSESQIPGKRKRFTAL 60

Query: 61  ASNNDNGLGGNIKEREGERNGAKGSNGGDDLRKERGPVFNIKWAELLIDPDPDNILAVAL 120
           ASNNDNGLGGNIKEREGERNGAKGS G DDLRKERGPVFNIKWAELLIDPDPDNILAVAL
Sbjct: 61  ASNNDNGLGGNIKEREGERNGAKGSKGDDDLRKERGPVFNIKWAELLIDPDPDNILAVAL 120

Query: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164
           TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164

BLAST of Cp4.1LG01g14320 vs. ExPASy TrEMBL
Match: A0A6J1JWP5 (uncharacterized protein LOC111489528 OS=Cucurbita maxima OX=3661 GN=LOC111489528 PE=4 SV=1)

HSP 1 Score: 290 bits (741), Expect = 2.35e-98
Identity = 158/164 (96.34%), Postives = 158/164 (96.34%), Query Frame = 0

Query: 1   MTMLGFLTIPYQWKISPSLSSSSSPFSLSTRSSLSFPLFKFPLHYSESQIPGKRKRFTAL 60
           MTMLGFLTIPYQWKISPSLSSSSSPF LSTRS LSFPLFKFPLHYSESQI GKRKRF AL
Sbjct: 1   MTMLGFLTIPYQWKISPSLSSSSSPFPLSTRSFLSFPLFKFPLHYSESQISGKRKRFAAL 60

Query: 61  ASNNDNGLGGNIKEREGERNGAKGSNGGDDLRKERGPVFNIKWAELLIDPDPDNILAVAL 120
           ASNNDNGLGGNIKEREGERNGAKGS G DDLRKERGPVFNIKWAELLIDPDPDNILAVAL
Sbjct: 61  ASNNDNGLGGNIKEREGERNGAKGSKGDDDLRKERGPVFNIKWAELLIDPDPDNILAVAL 120

Query: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164
           TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164

BLAST of Cp4.1LG01g14320 vs. ExPASy TrEMBL
Match: A0A6J1CF05 (uncharacterized protein LOC111010120 OS=Momordica charantia OX=3673 GN=LOC111010120 PE=4 SV=1)

HSP 1 Score: 223 bits (568), Expect = 6.09e-72
Identity = 130/168 (77.38%), Postives = 138/168 (82.14%), Query Frame = 0

Query: 3   MLGFLTIPYQWKISPS--LSSSSSPFSLSTRSSLSFPLFKFPLHYS----ESQIPGKRKR 62
           MLGF T+P QW  +    LSS+ +P S S  S  + P FKF LHY+     SQIP  R R
Sbjct: 1   MLGFRTLPCQWSSASVRLLSSTPTPSSSSKISLRTVPRFKFTLHYALLMTRSQIPRNRAR 60

Query: 63  FTALASNNDNGLGGNIKEREGERNGAKGSNGGDDLRKERGPVFNIKWAELLIDPDPDNIL 122
           FTA + N DNGLGGNIKEREGER GAKGSNGGDDL+KERGPVFNIKWAELLIDPDPDNIL
Sbjct: 61  FTAFSGNGDNGLGGNIKEREGERTGAKGSNGGDDLKKERGPVFNIKWAELLIDPDPDNIL 120

Query: 123 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164
           AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 121 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 168

BLAST of Cp4.1LG01g14320 vs. ExPASy TrEMBL
Match: A0A1S3BFX0 (uncharacterized protein LOC103489407 OS=Cucumis melo OX=3656 GN=LOC103489407 PE=4 SV=1)

HSP 1 Score: 222 bits (565), Expect = 3.16e-71
Identity = 132/168 (78.57%), Postives = 143/168 (85.12%), Query Frame = 0

Query: 2   TMLGFLTIPYQWKISPSLSSSSSPFSLSTRSSLSFPLFKFPLHY----SESQIPGKRKRF 61
           TMLGFLTIP+Q KISPSL+S  S   +S+ SSL  PL+KFPLH+    S+  I   R+RF
Sbjct: 22  TMLGFLTIPHQLKISPSLASLPS---ISSPSSLFLPLYKFPLHHTFFNSKFLISSNRRRF 81

Query: 62  TALASNNDNGLGGNIKEREGERNGAKGS-NGGDDLRKERGPVFNIKWAELLIDPDPDNIL 121
           TA ASN +   GG+IKEREGERNGAK S NGGDDL+KERGPVFNIKWAELLIDPDPDNIL
Sbjct: 82  TASASNKNTEFGGSIKEREGERNGAKSSSNGGDDLKKERGPVFNIKWAELLIDPDPDNIL 141

Query: 122 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164
           AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 142 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 186

BLAST of Cp4.1LG01g14320 vs. ExPASy TrEMBL
Match: A0A5D3CD16 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002130 PE=4 SV=1)

HSP 1 Score: 220 bits (560), Expect = 8.80e-71
Identity = 131/167 (78.44%), Postives = 142/167 (85.03%), Query Frame = 0

Query: 3   MLGFLTIPYQWKISPSLSSSSSPFSLSTRSSLSFPLFKFPLHY----SESQIPGKRKRFT 62
           MLGFLTIP+Q KISPSL+S  S   +S+ SSL  PL+KFPLH+    S+  I   R+RFT
Sbjct: 1   MLGFLTIPHQLKISPSLASLPS---ISSPSSLFLPLYKFPLHHTFFNSKFLISSNRRRFT 60

Query: 63  ALASNNDNGLGGNIKEREGERNGAKGS-NGGDDLRKERGPVFNIKWAELLIDPDPDNILA 122
           A ASN +   GG+IKEREGERNGAK S NGGDDL+KERGPVFNIKWAELLIDPDPDNILA
Sbjct: 61  ASASNKNTEFGGSIKEREGERNGAKSSSNGGDDLKKERGPVFNIKWAELLIDPDPDNILA 120

Query: 123 VALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164
           VALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 121 VALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164

BLAST of Cp4.1LG01g14320 vs. TAIR 10
Match: AT4G40045.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-17
Identity = 63/128 (49.22%), Postives = 81/128 (63.28%), Query Frame = 0

Query: 37  PLFKFPLHYSESQIPGKRKRFTALASNNDNGLGGNIKEREGERNGAKGSNGGDDLRKERG 96
           P F + + +    I   +     L +N  NG   + KE  G  N    ++ G+  +K++ 
Sbjct: 15  PRFSYNIPHHHHHIRLCKSPSLILRTNAQNG-NDSAKESSGGGNRPVTNDDGNGSKKDQF 74

Query: 97  PVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALL 156
             F+ KW ELL +PD DN +AV L G+L WAS+QVL QLFFIS AILVAALKYSFIAALL
Sbjct: 75  AGFSFKWGELL-NPDQDNFVAVGLAGVLTWASLQVLSQLFFISFAILVAALKYSFIAALL 134

Query: 157 IFILITLL 165
           IFIL+TLL
Sbjct: 135 IFILVTLL 140

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023549272.11.11e-103100.00uncharacterized protein LOC111807677 [Cucurbita pepo subsp. pepo][more]
KAG7032002.11.02e-9997.56hypothetical protein SDJN02_06044, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022957096.11.02e-9997.56uncharacterized protein LOC111458579 [Cucurbita moschata][more]
XP_022993576.14.85e-9896.34uncharacterized protein LOC111489528 [Cucurbita maxima][more]
KAG6601207.13.86e-8297.69hypothetical protein SDJN03_06440, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A6J1GYA24.94e-10097.56uncharacterized protein LOC111458579 OS=Cucurbita moschata OX=3662 GN=LOC1114585... [more]
A0A6J1JWP52.35e-9896.34uncharacterized protein LOC111489528 OS=Cucurbita maxima OX=3661 GN=LOC111489528... [more]
A0A6J1CF056.09e-7277.38uncharacterized protein LOC111010120 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
A0A1S3BFX03.16e-7178.57uncharacterized protein LOC103489407 OS=Cucumis melo OX=3656 GN=LOC103489407 PE=... [more]
A0A5D3CD168.80e-7178.44Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
AT4G40045.11.5e-1749.22unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..91
NoneNo IPR availablePANTHERPTHR36789TRANSMEMBRANE PROTEINcoord: 33..164

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g14320.1Cp4.1LG01g14320.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane