Cp4.1LG01g13940 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g13940
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionATP synthase subunit beta
LocationCp4.1LG01: 7913254 .. 7915598 (-)
RNA-Seq ExpressionCp4.1LG01g13940
SyntenyCp4.1LG01g13940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGAGTCGATCACAGCCTCCATAGAACCATCCACTCCTCAGCTCTCTGAAGCCCTTCTCATGGCTTCACGCAGACTTCTCTCCTCTCTTCTCAGATCCTCCGCCGGAAGAGCTTCCTCCAGATCTCCTCTCTCCAATCGCAATCCAAGAATTTCACCCACTACAACTTCACGCGCTTCTCCTTACGGGTATATTCTCTCTCGCGTGGCCGAGTATGCGACTTCTGCTGCGGCGGCTGCGCCTCCATCACCACTGCCTCTGGCGAAGGATGCCGCAAAAGGAGGGAAGATTACTGATGAGTTTACTGGTGCCGTGCGCTTGGACAGGTGTGTCAGGTGATTGGTGCTGTCGTCGATGTGAGATTCGATGAAGGATTGCCGCCTATCCTAAGGGCTCTTGAGGTGCTTGGCAACCCGATCCGTTTAGTGCTCGAGGTTGCTCAGCATTTGGGGGAGAACATGGTTCGGACTATTGCTATGGATGGGACTAAAGGGCTTGTTAGAGGACAGCGAGTGCTCAATACTGGTTCTCCTATCACTGTGAGTTTTGGTATTTGCTTCGTCGCTGCTACTCATTTGATTAGGTTAAATGGCGTTTTCTTGTTTATTTACGTTTTGACATTTGGTTGTGTCGTCATATCGGTGTGGTATGAATGAAGTGGAGATGGATTTCTTTTTCGCATGACATGGACTTGGTGATCAATGATATCCTCAGATCCCTTTATTATTGTTACATTTCTACAAATTTGTACACAATGTAAGATTTTATGTTGGAAATTTGAGCAGAATGAGTTGATGTGGACAACTATTGTAGGGAATTATAATTCGGTAGTTCGACTTATTTCCCCTTGTTATGATAACTTCAATGTAAGGAAAGTCTTCTAGACCTGTTCCTTTGTGAAATATGTTAGTTTTAAAGTAGGCTAATGCTTAATAAAGGAGATTTGAACATTGTCTAATTTTTACCAAATCTCGTGCTCCGGTTTACTATCTTTGATTGAATGGTGAACTGGTATTTTGTAGATGGTCATCAATTCTGTATTTTCTGTTGAATCCTGCAGCTGATGCACGTTCTTGAGTTTGATTGCTTCTTCCACAGATCAAGACATCATGCGTTTTATTATGTTTCGCTCCTATCTTTATTATGTATTATGTTTTGCTCTGCCTTTTGGACAATTTGTTTCTTGGTTAGGTTGTAAATGTTCATAACATTTGATTTGAATTGGTTATTTGGATTAGATTTGATTTGGTTACTATGAATTAGATTTAATCATAGAGATTTGGGGAGTTTTGTGTGTCACATTGTATTTCTTGATTTCTTGAGTGACATAACACTTTGTTTATTAGTGATTGGTTGCTACCCGTAGATGTAGGGGAACTTCTTCTCTCCGAACCACATAATGGTGTCTGTCTATTTGTGTAATTTCGTTCATTGATGTTGTGAGTGTTGGTGTCTCTTTGTGTAATTTCGTTCATTGGTGTTGTGAGTATTGGTGTCTCTTTGTGTAATTCCGTCCATTGGTGTTGTGAGTCTTGATGTCTCTTTGTGTAATTCCATTCATTGGTGTTGTGAGTATTGGTGTCTCTTTGTGTAATTCCGTTCATTGGTGTTGTGAGTCTTGATGTCTCTTTGTGTAATTTCGTTCATTGGTGTTGTGAGTATTGGTGTCTCTTTGTGTAATTCCGTTCATTGGTGTTGTGAGTCTTGATGTCTCTTTGTGTAATTCCATTCATTGGTGTTGTGAGTATTGGTGTCTCTTTGTGTAATTCCGTTCATTGGTGTTGTGAGTCTTGATGTCTCTTTGTGTAATTTCGTTCATTGGTGTTGTGAGTATTGGTGTCTCTTTGTGTAATTCCGTTCATTGGTGTTGTGAGTCTTAGTGTCTCTTTGTGTAATTCCATTCATTGGTGTTGTGAGTACATTTGTTCCACATTGGGCGTACACCATTTTAGCCCAACTTTTTTCAGGATAATCCATGGGATTTTTCTTTTCTAACATTTAAAAACTTGACAGGTGCCCGTTGGTAGGGCTACACTTCCTTCATTCTGAAAATTATGAAGATTGATCACTGAGGAGGTGCTGGAGAATAATACCAGCTACTACAGGGTTTCAATTTTTGGTTGAGATGCAACGCAAGCAGAGATCTTCTGCTCTGTTTCTAAGTTTTGTTGCAGAATCTGAAAGAGAGTTTCACCAGCATACGGCTTCTCCCTGTGCCCCTTTGGCCTTTGCTGTGTTCTTTTAACTAGGGGAGGAAGAAACAGCAGGACATGTACTAATTTTGCCATTTTTTCTTTACAACAATTTACCACATTTTATAGTATAATCAAATGGTTGAGTATTATT

mRNA sequence

GGGAGTCGATCACAGCCTCCATAGAACCATCCACTCCTCAGCTCTCTGAAGCCCTTCTCATGGCTTCACGCAGACTTCTCTCCTCTCTTCTCAGATCCTCCGCCGGAAGAGCTTCCTCCAGATCTCCTCTCTCCAATCGCAATCCAAGAATTTCACCCACTACAACTTCACGCGCTTCTCCTTACGGGTGTGTCAGGTGATTGGTGCTGTCGTCGATGTGAGATTCGATGAAGGATTGCCGCCTATCCTAAGGGCTCTTGAGGTGCTTGGCAACCCGATCCGTTTAGTGCTCGAGGTTGCTCAGCATTTGGGGGAGAACATGGTTCGGACTATTGCTATGGATGGGACTAAAGGGCTTGTTAGAGGACAGCGAGTGCTCAATACTGGTTCTCCTATCACTGTGCCCGTTGGTAGGGCTACACTTCCTTCATTCTGAAAATTATGAAGATTGATCACTGAGGAGGTGCTGGAGAATAATACCAGCTACTACAGGGTTTCAATTTTTGGTTGAGATGCAACGCAAGCAGAGATCTTCTGCTCTGTTTCTAAGTTTTGTTGCAGAATCTGAAAGAGAGTTTCACCAGCATACGGCTTCTCCCTGTGCCCCTTTGGCCTTTGCTGTGTTCTTTTAACTAGGGGAGGAAGAAACAGCAGGACATGTACTAATTTTGCCATTTTTTCTTTACAACAATTTACCACATTTTATAGTATAATCAAATGGTTGAGTATTATT

Coding sequence (CDS)

ATGGCTTCACGCAGACTTCTCTCCTCTCTTCTCAGATCCTCCGCCGGAAGAGCTTCCTCCAGATCTCCTCTCTCCAATCGCAATCCAAGAATTTCACCCACTACAACTTCACGCGCTTCTCCTTACGGGTGTGTCAGGTGA

Protein sequence

MASRRLLSSLLRSSAGRASSRSPLSNRNPRISPTTTSRASPYGCVR
Homology
[Close]
BLAST of Cp4.1LG01g13940 vs. ExPASy Swiss-Prot
Match: P29685 (ATP synthase subunit beta, mitochondrial OS=Hevea brasiliensis OX=3981 GN=ATPB PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 2.7e-06
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 1  MASRRLLSSLLRSSAGRASSRSPLSNRNPRI---SPTTTSRASPYG 44
          MASRRLLSSLLRSS+ R+ S+SP+SN NP++   SP++ SRASPYG
Sbjct: 1  MASRRLLSSLLRSSSRRSVSKSPISNINPKLSSSSPSSKSRASPYG 46

[Close]
BLAST of Cp4.1LG01g13940 vs. NCBI nr
Match: KAG6601260.1 (ATP synthase subunit beta, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.8 bits (177), Expect = 1.39e-13
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 1  MASRRLLSSLLRSSAGRASSRSPLSNRNPRISPTTTSRASPYGCV 45
          MASRRLLSSLLRSSAG ASSRSPLSN NPRISPTTTSRASPYG +
Sbjct: 25 MASRRLLSSLLRSSAGSASSRSPLSNPNPRISPTTTSRASPYGYI 69

[Close]
BLAST of Cp4.1LG01g13940 vs. NCBI nr
Match: KAG6573926.1 (ATP synthase subunit beta, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.5 bits (171), Expect = 1.62e-12
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 0 

Query: 1  MASRRLLSSLLRSSAGRASSRSPLSNRNPRISPTTTSRASPYGCV 45
          MASRRLLSSLLRSSA RASSRSP SN NPRISPTTTSRASPYG +
Sbjct: 1  MASRRLLSSLLRSSARRASSRSPFSNPNPRISPTTTSRASPYGYI 45

[Close]
BLAST of Cp4.1LG01g13940 vs. NCBI nr
Match: XP_023541095.1 (ATP synthase subunit beta, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.5 bits (171), Expect = 1.64e-12
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 0 

Query: 1  MASRRLLSSLLRSSAGRASSRSPLSNRNPRISPTTTSRASPYGCV 45
          MASRRLLSSLLRSSA RASSRSP SN NPRISPTTTSRASPYG +
Sbjct: 1  MASRRLLSSLLRSSARRASSRSPFSNPNPRISPTTTSRASPYGYI 45

[Close]
BLAST of Cp4.1LG01g13940 vs. NCBI nr
Match: KAG7012990.1 (ATP synthase subunit beta, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 70.5 bits (171), Expect = 1.64e-12
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 0 

Query: 1  MASRRLLSSLLRSSAGRASSRSPLSNRNPRISPTTTSRASPYGCV 45
          MASRRLLSSLLRSSA RASSRSP SN NPRISPTTTSRASPYG +
Sbjct: 1  MASRRLLSSLLRSSARRASSRSPFSNPNPRISPTTTSRASPYGYI 45

[Close]
BLAST of Cp4.1LG01g13940 vs. NCBI nr
Match: XP_022945804.1 (ATP synthase subunit beta, mitochondrial [Cucurbita moschata])

HSP 1 Score: 70.5 bits (171), Expect = 1.64e-12
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 0 

Query: 1  MASRRLLSSLLRSSAGRASSRSPLSNRNPRISPTTTSRASPYGCV 45
          MASRRLLSSLLRSSA RASSRSP SN NPRISPTTTSRASPYG +
Sbjct: 1  MASRRLLSSLLRSSARRASSRSPFSNPNPRISPTTTSRASPYGYI 45

[Close]
BLAST of Cp4.1LG01g13940 vs. ExPASy TrEMBL
Match: A0A6J1G1Z1 (ATP synthase subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111449943 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 7.93e-13
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 0 

Query: 1  MASRRLLSSLLRSSAGRASSRSPLSNRNPRISPTTTSRASPYGCV 45
          MASRRLLSSLLRSSA RASSRSP SN NPRISPTTTSRASPYG +
Sbjct: 1  MASRRLLSSLLRSSARRASSRSPFSNPNPRISPTTTSRASPYGYI 45

[Close]
BLAST of Cp4.1LG01g13940 vs. ExPASy TrEMBL
Match: A0A6J1HZC2 (ATP synthase subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111467593 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.80e-11
Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 1  MASRRLLSSLLRSSAGRASSRSPLSNRNPRISPTTTSRASPYGCV 45
          MASRRLLSSLLRSSA RASSRSP SN NPRIS TTTSRASPYG +
Sbjct: 1  MASRRLLSSLLRSSARRASSRSPFSNPNPRISLTTTSRASPYGYI 45

[Close]
BLAST of Cp4.1LG01g13940 vs. ExPASy TrEMBL
Match: A0A0A0KTA5 (ATP synthase subunit beta OS=Cucumis sativus OX=3659 GN=Csa_5G611600 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.60e-11
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 1  MASRRLLSSLLRSSAGRASSRSPLSNRNPRISPTTTSRASPYGCV 45
          MASRRLLSSLLRSSA RASSRSP SN NPRISP+TTSRASP G +
Sbjct: 1  MASRRLLSSLLRSSARRASSRSPFSNPNPRISPSTTSRASPRGYI 45

[Close]
BLAST of Cp4.1LG01g13940 vs. ExPASy TrEMBL
Match: A0A6J1DB27 (ATP synthase subunit beta OS=Momordica charantia OX=3673 GN=LOC111018677 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.59e-11
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 1  MASRRLLSSLLRSSAGRASSRSPLSNRNPRISPTTTSRASPYGCV 45
          MASRRLLSSLLRSS  RASSRSPLSN NPRISP TTSRASP G +
Sbjct: 1  MASRRLLSSLLRSSPRRASSRSPLSNPNPRISPVTTSRASPCGYI 45

[Close]
BLAST of Cp4.1LG01g13940 vs. ExPASy TrEMBL
Match: A0A5A7STZ9 (ATP synthase subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001450 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.61e-10
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 1  MASRRLLSSLLRSSAGRASSRSPLSNRNPRISPTTTSRASPYGCV 45
          MASRRLLSS LRSSA RASSRSP SN NPRISP+TTSRASP G +
Sbjct: 1  MASRRLLSSFLRSSARRASSRSPFSNPNPRISPSTTSRASPCGYI 45

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g13940 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P296852.7e-0667.39ATP synthase subunit beta, mitochondrial OS=Hevea brasiliensis OX=3981 GN=ATPB P... [more]
BLAST of Cp4.1LG01g13940 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6601260.11.39e-1391.11ATP synthase subunit beta, mitochondrial, partial [Cucurbita argyrosperma subsp.... [more]
KAG6573926.11.62e-1288.89ATP synthase subunit beta, mitochondrial, partial [Cucurbita argyrosperma subsp.... [more]
XP_023541095.11.64e-1288.89ATP synthase subunit beta, mitochondrial [Cucurbita pepo subsp. pepo][more]
KAG7012990.11.64e-1288.89ATP synthase subunit beta, mitochondrial [Cucurbita argyrosperma subsp. argyrosp... [more]
XP_022945804.11.64e-1288.89ATP synthase subunit beta, mitochondrial [Cucurbita moschata][more]
BLAST of Cp4.1LG01g13940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G1Z17.93e-1388.89ATP synthase subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111449943 PE=3 SV=... [more]
A0A6J1HZC21.80e-1186.67ATP synthase subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111467593 PE=3 SV=1[more]
A0A0A0KTA54.60e-1184.44ATP synthase subunit beta OS=Cucumis sativus OX=3659 GN=Csa_5G611600 PE=3 SV=1[more]
A0A6J1DB278.59e-1184.44ATP synthase subunit beta OS=Momordica charantia OX=3673 GN=LOC111018677 PE=3 SV... [more]
A0A5A7STZ91.61e-1082.22ATP synthase subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
BLAST of Cp4.1LG01g13940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR042079ATP synthase, F1 beta subunit superfamilyGENE3D1.10.10.910ATP synthase, F1 beta subunitcoord: 1..45
e-value: 1.1E-12
score: 50.2
IPR020971ATP synthase, F1 beta subunitPFAMPF11421Synthase_betacoord: 1..43
e-value: 3.7E-16
score: 59.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..46

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g13940.1Cp4.1LG01g13940.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006754 ATP biosynthetic process
biological_process GO:0042776 mitochondrial ATP synthesis coupled proton transport
cellular_component GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1)
molecular_function GO:0005524 ATP binding
molecular_function GO:0016887 ATP hydrolysis activity
molecular_function GO:0046961 proton-transporting ATPase activity, rotational mechanism
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism