Cp4.1LG01g13730 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g13730
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Clavata3/esr-related 43, putative
Location	Cp4.1LG01: 8071318 .. 8071671 (+)
RNA-Seq Expression	Cp4.1LG01g13730
Synteny	Cp4.1LG01g13730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGCGTTTTCTTCCCGCCGCCGGGCAGCCATGTGTACCAGAAGAATCGCCACTTCCTCCTCCTCCTCCTCCTCCTCTTCTTTTGCCCTGCTAATTTTCATCCTCTGGGTGTCACAGATTTGGGTTTGCTCTCACTGCCAAGCTAAAGCTTCACGGATTTTTCCTCCGCCGCCGCCGTCGCACACGGCGGACAAAACACTCACTGTCGACCAAAAACACAACGCCAACGCCGAAAGCGAACTTCTCCGAAAATACTTCAAGGGAAAGGCCTTCGATCGACACCGCCACGATGAAGGATTCGAAGACAGCAAACGGAGAATACCCAGTTGTCCGGATCCTCTTCATAATTAG

mRNA sequence

ATGTCGGCGTTTTCTTCCCGCCGCCGGGCAGCCATGTGTACCAGAAGAATCGCCACTTCCTCCTCCTCCTCCTCCTCCTCTTCTTTTGCCCTGCTAATTTTCATCCTCTGGGTGTCACAGATTTGGGTTTGCTCTCACTGCCAAGCTAAAGCTTCACGGATTTTTCCTCCGCCGCCGCCGTCGCACACGGCGGACAAAACACTCACTGTCGACCAAAAACACAACGCCAACGCCGAAAGCGAACTTCTCCGAAAATACTTCAAGGGAAAGGCCTTCGATCGACACCGCCACGATGAAGGATTCGAAGACAGCAAACGGAGAATACCCAGTTGTCCGGATCCTCTTCATAATTAG

Coding sequence (CDS)

ATGTCGGCGTTTTCTTCCCGCCGCCGGGCAGCCATGTGTACCAGAAGAATCGCCACTTCCTCCTCCTCCTCCTCCTCCTCTTCTTTTGCCCTGCTAATTTTCATCCTCTGGGTGTCACAGATTTGGGTTTGCTCTCACTGCCAAGCTAAAGCTTCACGGATTTTTCCTCCGCCGCCGCCGTCGCACACGGCGGACAAAACACTCACTGTCGACCAAAAACACAACGCCAACGCCGAAAGCGAACTTCTCCGAAAATACTTCAAGGGAAAGGCCTTCGATCGACACCGCCACGATGAAGGATTCGAAGACAGCAAACGGAGAATACCCAGTTGTCCGGATCCTCTTCATAATTAG

Protein sequence

MSAFSSRRRAAMCTRRIATSSSSSSSSSFALLIFILWVSQIWVCSHCQAKASRIFPPPPPSHTADKTLTVDQKHNANAESELLRKYFKGKAFDRHRHDEGFEDSKRRIPSCPDPLHN

Homology

[Close]

BLAST of Cp4.1LG01g13730 vs. ExPASy Swiss-Prot
Match: Q6IWB1 (CLAVATA3/ESR (CLE)-related protein 43 OS=Arabidopsis thaliana OX=3702 GN=CLE43 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.7e-04
Identity = 30/93 (32.26%), Postives = 47/93 (50.54%), Query Frame = 0


Query: 28  SFALLIFILWVSQIWVCSHCQAKASRIFPPPPPSHTAD--KTLTVDQKHNANAE-SELLR 87
           +F++ + ++ + QIW+      +  R  P            TL   +  N N +   L +
Sbjct: 9   TFSVALLLISLFQIWL-----FREGRQVPELSDDQLGKDRNTLMTSKNKNKNEDVQRLFQ 68

Query: 88  KYFKGKAFDRHRHDEGFEDSKRRIPSCPDPLHN 118
           +YFKG++F  +  +  FEDS RRIPS PD LHN
Sbjct: 69  RYFKGRSFGLNNTNSRFEDSNRRIPSSPDRLHN 96

[Close]

BLAST of Cp4.1LG01g13730 vs. NCBI nr
Match: KAG6601288.1 (CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196 bits (499), Expect = 1.07e-62
Identity = 104/119 (87.39%), Postives = 107/119 (89.92%), Query Frame = 0


Query: 1   MSAFSSRRRAAMCTRRIATSSSSSSSSSFALLIFILWVSQIWVCSHCQAKASRIFPPPPP 60
           MS +SSRRRAAMCTRRIATSSS    SSFALLIFILWVSQIWVCSHCQA+ASRIFPPPPP
Sbjct: 1   MSGYSSRRRAAMCTRRIATSSS----SSFALLIFILWVSQIWVCSHCQARASRIFPPPPP 60

Query: 61  SHTADKTLTVDQKHNANA--ESELLRKYFKGKAFDRHRHDEGFEDSKRRIPSCPDPLHN 117
            HTAD TLT DQK+NANA  E ELLRKYFKGKAFDRHR DEGFEDSKRRIPSCPDPLHN
Sbjct: 61  -HTADTTLTGDQKYNANANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 114

[Close]

BLAST of Cp4.1LG01g13730 vs. NCBI nr
Match: KAG7032076.1 (CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183 bits (465), Expect = 1.15e-57
Identity = 95/108 (87.96%), Postives = 97/108 (89.81%), Query Frame = 0


Query: 12  MCTRRIATSSSSSSSSSFALLIFILWVSQIWVCSHCQAKASRIFPPPPPSHTADKTLTVD 71
           MCTRRIATSSS    SSFALLIFILWVSQIWVCSHCQA+ASRIFPPPPP HTAD TLT D
Sbjct: 1   MCTRRIATSSS----SSFALLIFILWVSQIWVCSHCQARASRIFPPPPP-HTADTTLTGD 60

Query: 72  QKHNANA--ESELLRKYFKGKAFDRHRHDEGFEDSKRRIPSCPDPLHN 117
           QK+NANA  E ELLRKYFKGKAFDRHR DEGFEDSKRRIPSCPDPLHN
Sbjct: 61  QKYNANANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 103

[Close]

BLAST of Cp4.1LG01g13730 vs. NCBI nr
Match: KGN52083.1 (hypothetical protein Csa_008231 [Cucumis sativus])

HSP 1 Score: 162 bits (410), Expect = 3.16e-49
Identity = 80/109 (73.39%), Postives = 93/109 (85.32%), Query Frame = 0


Query: 12  MCTRRIATSSSSSSSSSFALLIFILWVSQIWVCSHCQAKASRIFPPPPPS---HTADKTL 71
           M  RRI TSSSSSS+S+FA+LI ILWVSQIWVC HCQA+ASRIFPPPPP    H ADK+L
Sbjct: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60

Query: 72  TVDQKHNANAESELLRKYFKGKAFDRHRHDEGFEDSKRRIPSCPDPLHN 117
           + ++K NA   ++LL+KYF G+AFDRHRHDEGFEDSKR+IPSCPDPLHN
Sbjct: 61  SGEEKDNAK--NDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]

BLAST of Cp4.1LG01g13730 vs. NCBI nr
Match: KAG6573960.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127 bits (318), Expect = 2.62e-35
Identity = 73/112 (65.18%), Postives = 79/112 (70.54%), Query Frame = 0


Query: 12  MCTRRIATSSSSSSSSSFALLIFILWVSQIWV-CSHCQAKASRIFPPPPPS----HTADK 71
           MCTRRIA S      SSFA+LI ILWVSQIWV C   QA+ASRIFPPPPP     HT DK
Sbjct: 1   MCTRRIAAS------SSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDK 60

Query: 72  TLTVDQKHNANAESELLRKYFKGKAF-DRHRHDEGFEDSKRRIPSCPDPLHN 117
           T       +AN   ELL+KYFK +AF D HRH EGF DSKR+IPSCPDPLHN
Sbjct: 61  T------DHANRRYELLQKYFKDRAFLDPHRHHEGFVDSKRKIPSCPDPLHN 100

[Close]

BLAST of Cp4.1LG01g13730 vs. NCBI nr
Match: XP_022150497.1 (uncharacterized protein LOC111018633 [Momordica charantia])

HSP 1 Score: 122 bits (305), Expect = 4.14e-31
Identity = 65/102 (63.73%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 12  MCTRRIATSSSSSSSSSFALLIFILWVSQIWVCSHCQAKASRIFPPPPPSHTADKTLTVD 71
           MCTRRIA  SSS+  SSFA+LI ILWVSQIWVC HCQA+ASRI PPP         LT D
Sbjct: 1   MCTRRIAAVSSSA--SSFAILILILWVSQIWVCCHCQARASRILPPP---------LTGD 60

Query: 72  QKHNANAESELLRKYFKGKAFDRHRHDEGFEDSKRRIPSCPD 113
            KH+A+ ++EL++KY +G+A DRH   EGFEDSKRR+PSC D
Sbjct: 61  AKHDASGKNELVQKYLRGRASDRH---EGFEDSKRRVPSCSD 88

[Close]

BLAST of Cp4.1LG01g13730 vs. ExPASy TrEMBL
Match: A0A0A0KR66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1)

HSP 1 Score: 162 bits (410), Expect = 1.53e-49
Identity = 80/109 (73.39%), Postives = 93/109 (85.32%), Query Frame = 0


Query: 12  MCTRRIATSSSSSSSSSFALLIFILWVSQIWVCSHCQAKASRIFPPPPPS---HTADKTL 71
           M  RRI TSSSSSS+S+FA+LI ILWVSQIWVC HCQA+ASRIFPPPPP    H ADK+L
Sbjct: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60

Query: 72  TVDQKHNANAESELLRKYFKGKAFDRHRHDEGFEDSKRRIPSCPDPLHN 117
           + ++K NA   ++LL+KYF G+AFDRHRHDEGFEDSKR+IPSCPDPLHN
Sbjct: 61  SGEEKDNAK--NDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]

BLAST of Cp4.1LG01g13730 vs. ExPASy TrEMBL
Match: A0A6J1DAV9 (uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018633 PE=3 SV=1)

HSP 1 Score: 122 bits (305), Expect = 2.01e-31
Identity = 65/102 (63.73%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 12  MCTRRIATSSSSSSSSSFALLIFILWVSQIWVCSHCQAKASRIFPPPPPSHTADKTLTVD 71
           MCTRRIA  SSS+  SSFA+LI ILWVSQIWVC HCQA+ASRI PPP         LT D
Sbjct: 1   MCTRRIAAVSSSA--SSFAILILILWVSQIWVCCHCQARASRILPPP---------LTGD 60

Query: 72  QKHNANAESELLRKYFKGKAFDRHRHDEGFEDSKRRIPSCPD 113
            KH+A+ ++EL++KY +G+A DRH   EGFEDSKRR+PSC D
Sbjct: 61  AKHDASGKNELVQKYLRGRASDRH---EGFEDSKRRVPSCSD 88

[Close]

BLAST of Cp4.1LG01g13730 vs. ExPASy TrEMBL
Match: A0A067GNI3 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g046114mg PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.27e-21
Identity = 51/104 (49.04%), Postives = 66/104 (63.46%), Query Frame = 0


Query: 15  RRIATSSSSSSSSSFA-LLIFILWVSQIWVCSHCQAKASRIFPPPPPSHTADKTLTVDQK 74
           +RI  SSSSSS S  A +L+ I+ V QIWVC  CQ  A RIF  P   +  +K   V + 
Sbjct: 9   KRIVYSSSSSSFSMVAAMLMIIMLVLQIWVCRDCQVGAIRIFSTP---NEVEKQQMVTKN 68

Query: 75  HNANAESELLRKYFKGKAFDRHRHDEGFEDSKRRIPSCPDPLHN 117
           + +  E +L+RKYF G AF+  R ++G  D KRR+PSCPDPLHN
Sbjct: 69  NKSYKEGDLVRKYFGGSAFNFSRTEKGIADDKRRVPSCPDPLHN 109

[Close]

BLAST of Cp4.1LG01g13730 vs. ExPASy TrEMBL
Match: A0A2C9VNI0 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G068400 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 6.28e-20
Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = 0


Query: 25  SSSSFALLIFILWVSQIWVCSHCQAKASRIFPPPP-PSHTADKTLTVDQKHNANAESELL 84
           SSS  AL++F++++ QIWVCS C+A A RIFP    PS    + +T     N   + +LL
Sbjct: 13  SSSLVALVVFLIFMLQIWVCSDCKAGAIRIFPDNGMPSKLKHRNITTTD--NKATKQDLL 72

Query: 85  RKYFKGKAFDRHRHDEGFEDSKRRIPSCPDPLHN 117
           RK+F G+A   +   +GFE++KRR+PSCPDPLHN
Sbjct: 73  RKFFNGRASSFNSSKKGFEENKRRVPSCPDPLHN 104

[Close]

BLAST of Cp4.1LG01g13730 vs. ExPASy TrEMBL
Match: A0A2C9UKL3 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G102600 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.05e-18
Identity = 40/93 (43.01%), Postives = 60/93 (64.52%), Query Frame = 0


Query: 25  SSSSFALLIFILWVSQIWVCSHCQAKASRIFPPPPPSHTADKTLTVDQKHNANAESELLR 84
           SSS   L++F+++V QIWVCS C+A A RIFP    +    K   +    N +++ +L  
Sbjct: 13  SSSLLVLVVFLIFVLQIWVCSDCKAGAIRIFPDNGMAPNL-KQRNISTTDNKDSKEDLFH 72

Query: 85  KYFKGKAFDRHRHDEGFEDSKRRIPSCPDPLHN 117
           K+F G+ +  +   +GFE++KRR+PSCPDPLHN
Sbjct: 73  KFFNGRQYSFNTTKKGFEENKRRVPSCPDPLHN 104

[Close]

BLAST of Cp4.1LG01g13730 vs. TAIR 10
Match: AT1G25425.1 (CLAVATA3/ESR-RELATED 43 )

HSP 1 Score: 47.0 bits (110), Expect = 1.2e-05
Identity = 30/93 (32.26%), Postives = 47/93 (50.54%), Query Frame = 0


Query: 28  SFALLIFILWVSQIWVCSHCQAKASRIFPPPPPSHTAD--KTLTVDQKHNANAE-SELLR 87
           +F++ + ++ + QIW+      +  R  P            TL   +  N N +   L +
Sbjct: 9   TFSVALLLISLFQIWL-----FREGRQVPELSDDQLGKDRNTLMTSKNKNKNEDVQRLFQ 68

Query: 88  KYFKGKAFDRHRHDEGFEDSKRRIPSCPDPLHN 118
           +YFKG++F  +  +  FEDS RRIPS PD LHN
Sbjct: 69  RYFKGRSFGLNNTNSRFEDSNRRIPSSPDRLHN 96

[Close]

BLAST of Cp4.1LG01g13730 vs. TAIR 10
Match: AT3G25905.1 (CLAVATA3/ESR-RELATED 27 )

HSP 1 Score: 43.9 bits (102), Expect = 1.0e-04
Identity = 31/96 (32.29%), Postives = 44/96 (45.83%), Query Frame = 0


Query: 24  SSSSSFALLIFILWVSQIWVCSHCQAKASRIFPPPPPSHTADKTLTVDQKHNANAESELL 83
           SS ++  L++ +L       C + +  A RIFP  P S                 E +L+
Sbjct: 9   SSLTTTLLMVILLSYMLHLFCVYSRVGAIRIFPETPAS-------------GKRQEEDLM 68

Query: 84  RKYFKGKAFDRHRH--DEGFEDSKRRIPSCPDPLHN 118
           +KYF    F        +G  +SKR +PSCPDPLHN
Sbjct: 69  KKYFGAGKFPPVDSFVGKGISESKRIVPSCPDPLHN 91

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g13730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6IWB1	1.7e-04	32.26	CLAVATA3/ESR (CLE)-related protein 43 OS=Arabidopsis thaliana OX=3702 GN=CLE43 P...	[more]

BLAST of Cp4.1LG01g13730 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601288.1	1.07e-62	87.39	CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7032076.1	1.15e-57	87.96	CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. ar...	[more]
KGN52083.1	3.16e-49	73.39	hypothetical protein Csa_008231 [Cucumis sativus]	[more]
KAG6573960.1	2.62e-35	65.18	CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022150497.1	4.14e-31	63.73	uncharacterized protein LOC111018633 [Momordica charantia]	[more]

BLAST of Cp4.1LG01g13730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR66	1.53e-49	73.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1	[more]
A0A6J1DAV9	2.01e-31	63.73	uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A067GNI3	6.27e-21	49.04	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g046114mg PE=4 SV=1	[more]
A0A2C9VNI0	6.28e-20	47.87	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G068400 PE=4 SV=...	[more]
A0A2C9UKL3	2.05e-18	43.01	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G102600 PE=4 SV=...	[more]

BLAST of Cp4.1LG01g13730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G25425.1	1.2e-05	32.26	CLAVATA3/ESR-RELATED 43	[more]
AT3G25905.1	1.0e-04	32.29	CLAVATA3/ESR-RELATED 27	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..117
None	No IPR available	PANTHER	PTHR37184:SF2	CLAVATA3/ESR (CLE)-RELATED PROTEIN 27	coord: 15..117
IPR040274	CLAVATA3/ESR (CLE)-related protein 27/43	PANTHER	PTHR37184	CLAVATA3/ESR (CLE)-RELATED PROTEIN 27	coord: 15..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g13730.1	Cp4.1LG01g13730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane