Cp4.1LG01g13630 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g13630
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionRibulose bisphosphate carboxylase small subunit
LocationCp4.1LG01: 8064021 .. 8064869 (-)
RNA-Seq ExpressionCp4.1LG01g13630
SyntenyCp4.1LG01g13630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCTCCATCGTCTCATCCGCCGCTGTTGCCTCTGTGAACAGGGCCTCCCCTGCTCAAGCAAGCATGGTAGCCCCCTTCGTTGGCCTCAAATCCACCGCCGGCTTCCCTGTCACCCGCAAGAACAACGACATCACCACCCTCGCCAGCAATGGCTCAAGAGTAAAGTGCATGAAGGTATCACAATTTAAGCAACAACTCATTCCCCCTCATTAATTAGTTAATTAATTAGGGCTTATTATTAGTATTAATCTGTTTATTTTTTGTTGCTGTTAAAACAAAAACAAAGGTGTGGCCACCACTTGGATTGAAGAAGTTCGAGACTCTGTCCTACCTCCCTGATCTTACCGGTGAACAATTGTTGAAGGAAATTGCGTACCTTCTCCGCTCTGGCTGGGTTCCCTGCATCGAGTTCGAATTGGAGGTCAGTAATGAATAAATGATTCAATGATTCAATTGAAAAGAAGAATGGAATTGCTGAATTGTGTTGTTGGTTTGAATGATGGTGCTTTGCAGAAGGGATTCGTGTACCGTGAGAACCACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCCATGTTTGGGTGCACAGACCCCGCTCAGGTGGCTGCTGAGATCGAGGAGGCCAAGAAGGAATACCCCAACGCATTCATCAGGGTCATTGGCTTCGACAACGTCCGCCAAGTCCAGTGCATCAGTTTCATTGTCTACAAGCCTGCAAGCTACTAAGTCCATCCCCACTCCACGCTTTTGCTTCAGTTGGGTTTCATCAAATTTCTTTTTCCTTTTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

mRNA sequence

ATGGCTTCCTCCATCGTCTCATCCGCCGCTGTTGCCTCTGTGAACAGGGCCTCCCCTGCTCAAGCAAGCATGGTAGCCCCCTTCGTTGGCCTCAAATCCACCGCCGGCTTCCCTGTCACCCGCAAGAACAACGACATCACCACCCTCGCCAGCAATGGCTCAAGAGTAAAGTGCATGAAGGTGTGGCCACCACTTGGATTGAAGAAGTTCGAGACTCTGTCCTACCTCCCTGATCTTACCGGTGAACAATTGTTGAAGGAAATTGCGTACCTTCTCCGCTCTGGCTGGGTTCCCTGCATCGAGTTCGAATTGGAGAAGGGATTCGTGTACCGTGAGAACCACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCCATGTTTGGGTGCACAGACCCCGCTCAGGTGGCTGCTGAGATCGAGGAGGCCAAGAAGGAATACCCCAACGCATTCATCAGGGTCATTGGCTTCGACAACGTCCGCCAAGTCCAGTGCATCAGTTTCATTGTCTACAAGCCTGCAAGCTACTAAGTCCATCCCCACTCCACGCTTTTGCTTCAGTTGGGTTTCATCAAATTTCTTTTTCCTTTTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGGCTTCCTCCATCGTCTCATCCGCCGCTGTTGCCTCTGTGAACAGGGCCTCCCCTGCTCAAGCAAGCATGGTAGCCCCCTTCGTTGGCCTCAAATCCACCGCCGGCTTCCCTGTCACCCGCAAGAACAACGACATCACCACCCTCGCCAGCAATGGCTCAAGAGTAAAGTGCATGAAGGTGTGGCCACCACTTGGATTGAAGAAGTTCGAGACTCTGTCCTACCTCCCTGATCTTACCGGTGAACAATTGTTGAAGGAAATTGCGTACCTTCTCCGCTCTGGCTGGGTTCCCTGCATCGAGTTCGAATTGGAGAAGGGATTCGTGTACCGTGAGAACCACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCCATGTTTGGGTGCACAGACCCCGCTCAGGTGGCTGCTGAGATCGAGGAGGCCAAGAAGGAATACCCCAACGCATTCATCAGGGTCATTGGCTTCGACAACGTCCGCCAAGTCCAGTGCATCAGTTTCATTGTCTACAAGCCTGCAAGCTACTAA

Protein sequence

MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNNDITTLASNGSRVKCMKVWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPASY
Homology
[Close]
BLAST of Cp4.1LG01g13630 vs. ExPASy Swiss-Prot
Match: P08474 (Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Cucumis sativus OX=3659 GN=RBCS PE=2 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 3.4e-84
Identity = 149/179 (83.24%), Postives = 164/179 (91.62%), Query Frame = 0 

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNN-DITTLASNGSRVKCM 60
           MASSI+SSAAVASVN ASPAQASMVAPF GLKS+AGFP+TRKNN DITTLASN  +V+CM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNAGKVQCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGY 120
           KVWPPLGL+KFETLSYLPD++ EQL KE  YLLR+GWVPC+EF++  GFVYRENHRSPG+
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGF 120

Query: 121 YDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKP 179
           YDGRYWTMWKLPMFGCTD +QV  EIEEAKKEYP+AFIRVIGFDNVRQVQCISFI YKP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179

[Close]
BLAST of Cp4.1LG01g13630 vs. ExPASy Swiss-Prot
Match: P16032 (Ribulose bisphosphate carboxylase small subunit, chloroplastic 1 OS=Mesembryanthemum crystallinum OX=3544 GN=RBCS1 PE=2 SV=2)

HSP 1 Score: 299.3 bits (765), Expect = 3.0e-80
Identity = 142/181 (78.45%), Postives = 161/181 (88.95%), Query Frame = 0 

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNNDITTLASNGSRVKCMK 60
           MASS+VSSAAVA+VNR +PAQASMVAPF GLKS A FPVT+KNNDIT++A+NG RV+CM+
Sbjct: 1   MASSMVSSAAVATVNR-TPAQASMVAPFNGLKSVAAFPVTKKNNDITSVATNGGRVQCMQ 60

Query: 61  VWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120
           VWPPLG KKFETLSYLP L+ E L+KE+ YLL +GWVPC+EFE   GFVYRE+  +PGYY
Sbjct: 61  VWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180
           DGRYWTMWKLPMFGCTDP+QV AE+EEAKK YP AFIR+IGFDNVRQVQCISFI YKPAS
Sbjct: 121 DGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKPAS 180

Query: 181 Y 182
           Y
Sbjct: 181 Y 180

[Close]
BLAST of Cp4.1LG01g13630 vs. ExPASy Swiss-Prot
Match: P32764 (Ribulose bisphosphate carboxylase small subunit, chloroplastic 6 OS=Solanum tuberosum OX=4113 GN=RBCS6 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.5e-79
Identity = 141/183 (77.05%), Postives = 161/183 (87.98%), Query Frame = 0 

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNN--DITTLASNGSRVKC 60
           MASSIVSSAAVA+  R++ AQASMVAPF GLKS A FPVT+KNN  DIT+LASNG RV+C
Sbjct: 1   MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRC 60

Query: 61  MKVWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPG 120
           M+VWPP+ +KK+ETLSYLPDL+ EQLLKE+ YLL++GWVPC+EFE E GFVYRENH+SPG
Sbjct: 61  MQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPG 120

Query: 121 YYDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKP 180
           YYDGRYWTMWKLPMFGCTD  QV AE++EAKK YP A+IR+IGFDNVRQVQCISFI YKP
Sbjct: 121 YYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 180

Query: 181 ASY 182
             Y
Sbjct: 181 EGY 181

[Close]
BLAST of Cp4.1LG01g13630 vs. ExPASy Swiss-Prot
Match: P24007 (Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Pyrus pyrifolia OX=3767 GN=RBCS PE=2 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 3.3e-79
Identity = 139/183 (75.96%), Postives = 159/183 (86.89%), Query Frame = 0 

Query: 1   MASSIVSSAAVASV--NRASPAQASMVAPFVGLKSTAGFPVTRKNNDITTLASNGSRVKC 60
           MASS++SS  VA+V  +R +PAQA MVAPF GLKS++ FPVTRK+NDIT++ASNG RV+C
Sbjct: 1   MASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRKSNDITSIASNGGRVQC 60

Query: 61  MKVWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPG 120
           M+VWPPLGLKKFETLSYLP L+ E L KE+ YLLR  WVPC+EFELE GFVYRENHRSPG
Sbjct: 61  MQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPG 120

Query: 121 YYDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKP 180
           YYDGRYWTMWKLPMFGCTD +QV  E+EEAKK YP +FIR+IGFDNVRQVQCISFI YKP
Sbjct: 121 YYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKP 180

Query: 181 ASY 182
           A +
Sbjct: 181 AGF 183

[Close]
BLAST of Cp4.1LG01g13630 vs. ExPASy Swiss-Prot
Match: P26576 (Ribulose bisphosphate carboxylase small subunit, chloroplastic 4 OS=Solanum tuberosum OX=4113 GN=RBCS4 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 2.1e-78
Identity = 140/182 (76.92%), Postives = 160/182 (87.91%), Query Frame = 0 

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNN-DITTLASNGSRVKCM 60
           MASSIVSSAAVA+  RA+ AQASMV PF GLKSTA FPV+RK N DIT++ASNG RV+CM
Sbjct: 1   MASSIVSSAAVAT--RANGAQASMVGPFTGLKSTASFPVSRKQNLDITSIASNGGRVRCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGY 120
           +VWPP+ +KK+ETLSYLPDL+ EQLLKE+ YLL++GWVPC+EFE E GFVYREN++SPGY
Sbjct: 61  QVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPA 180
           YDGRYWTMWKLPMFGCTD  QV AE+EEAKK YP A+IR+IGFDNVRQVQCISFI YKP 
Sbjct: 121 YDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPE 180

Query: 181 SY 182
            Y
Sbjct: 181 GY 180

[Close]
BLAST of Cp4.1LG01g13630 vs. NCBI nr
Match: XP_023513414.1 (ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023513481.1 ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 365 bits (938), Expect = 1.60e-127
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0 

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNNDITTLASNGSRVKCMK 60
           MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNNDITTLASNGSRVKCMK
Sbjct: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNNDITTLASNGSRVKCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180
           DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS
Sbjct: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180

[Close]
BLAST of Cp4.1LG01g13630 vs. NCBI nr
Match: XP_022957356.1 (ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita moschata] >KAG6601287.1 Ribulose bisphosphate carboxylase small chain, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032075.1 Ribulose bisphosphate carboxylase small chain, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 359 bits (921), Expect = 6.28e-125
Identity = 178/181 (98.34%), Postives = 178/181 (98.34%), Query Frame = 0 

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNNDITTLASNGSRVKCMK 60
           MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTA FPVTRKNNDITTLASNGSRVKCMK
Sbjct: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAAFPVTRKNNDITTLASNGSRVKCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLPDLT EQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPDLTSEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180
           DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKP S
Sbjct: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPPS 180

[Close]
BLAST of Cp4.1LG01g13630 vs. NCBI nr
Match: XP_023542956.1 (ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 355 bits (912), Expect = 1.48e-123
Identity = 174/181 (96.13%), Postives = 178/181 (98.34%), Query Frame = 0 

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNNDITTLASNGSRVKCMK 60
           MAS + S+AAVASVNRASPAQASMVAP+ GLKSTAGFPVTRKNNDITTLASNGSRV+CMK
Sbjct: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180
           DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS
Sbjct: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180

[Close]
BLAST of Cp4.1LG01g13630 vs. NCBI nr
Match: XP_022986878.1 (ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 354 bits (908), Expect = 6.03e-123
Identity = 175/181 (96.69%), Postives = 177/181 (97.79%), Query Frame = 0 

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNNDITTLASNGSRVKCMK 60
           MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTA FPVTRKNNDITTLASNGSRVKCMK
Sbjct: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAAFPVTRKNNDITTLASNGSRVKCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLPDL+  QLLKEI YLLRSGWVPCIEFELEKGFVYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPDLSDAQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180
           DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPA+
Sbjct: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAT 180

[Close]
BLAST of Cp4.1LG01g13630 vs. NCBI nr
Match: XP_022945823.1 (ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita moschata] >KAG6573959.1 Ribulose bisphosphate carboxylase small chain, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 352 bits (902), Expect = 4.96e-122
Identity = 172/181 (95.03%), Postives = 176/181 (97.24%), Query Frame = 0 

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNNDITTLASNGSRVKCMK 60
           MAS + S+AAVASVNRASPAQASMVAP+ GLKSTAGFPVTRKNNDITTLASNGSRV+CMK
Sbjct: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLPDLT EQLLKEI YLLRSGWVPCIEFELEKGFVYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180
           DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS
Sbjct: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180

[Close]
BLAST of Cp4.1LG01g13630 vs. ExPASy TrEMBL
Match: A0A6J1GZ01 (Ribulose bisphosphate carboxylase small subunit OS=Cucurbita moschata OX=3662 GN=LOC111458779 PE=3 SV=1)

HSP 1 Score: 359 bits (921), Expect = 3.04e-125
Identity = 178/181 (98.34%), Postives = 178/181 (98.34%), Query Frame = 0 

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNNDITTLASNGSRVKCMK 60
           MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTA FPVTRKNNDITTLASNGSRVKCMK
Sbjct: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAAFPVTRKNNDITTLASNGSRVKCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLPDLT EQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPDLTSEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180
           DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKP S
Sbjct: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPPS 180

[Close]
BLAST of Cp4.1LG01g13630 vs. ExPASy TrEMBL
Match: A0A6J1JHU0 (Ribulose bisphosphate carboxylase small subunit OS=Cucurbita maxima OX=3661 GN=LOC111484459 PE=3 SV=1)

HSP 1 Score: 354 bits (908), Expect = 2.92e-123
Identity = 175/181 (96.69%), Postives = 177/181 (97.79%), Query Frame = 0 

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNNDITTLASNGSRVKCMK 60
           MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTA FPVTRKNNDITTLASNGSRVKCMK
Sbjct: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAAFPVTRKNNDITTLASNGSRVKCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLPDL+  QLLKEI YLLRSGWVPCIEFELEKGFVYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPDLSDAQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180
           DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPA+
Sbjct: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAT 180

[Close]
BLAST of Cp4.1LG01g13630 vs. ExPASy TrEMBL
Match: A0A6J1G227 (Ribulose bisphosphate carboxylase small subunit OS=Cucurbita moschata OX=3662 GN=LOC111449952 PE=3 SV=1)

HSP 1 Score: 352 bits (902), Expect = 2.40e-122
Identity = 172/181 (95.03%), Postives = 176/181 (97.24%), Query Frame = 0 

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNNDITTLASNGSRVKCMK 60
           MAS + S+AAVASVNRASPAQASMVAP+ GLKSTAGFPVTRKNNDITTLASNGSRV+CMK
Sbjct: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLPDLT EQLLKEI YLLRSGWVPCIEFELEKGFVYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180
           DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS
Sbjct: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180

[Close]
BLAST of Cp4.1LG01g13630 vs. ExPASy TrEMBL
Match: A0A6J1HZN6 (Ribulose bisphosphate carboxylase small subunit OS=Cucurbita maxima OX=3661 GN=LOC111467689 PE=3 SV=1)

HSP 1 Score: 345 bits (886), Expect = 6.61e-120
Identity = 169/181 (93.37%), Postives = 174/181 (96.13%), Query Frame = 0 

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNNDITTLASNGSRVKCMK 60
           MAS + S+AAVASVNRASPAQASMVAP+ GLKSTAGFPVTRKNNDITTLASNGSRV+CMK
Sbjct: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLPDL+  QLLKEI YLLRSGWVPCIEFELEKGFVYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPDLSDAQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180
           DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKP S
Sbjct: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPES 180

[Close]
BLAST of Cp4.1LG01g13630 vs. ExPASy TrEMBL
Match: A0A6J1D9J4 (Ribulose bisphosphate carboxylase small subunit OS=Momordica charantia OX=3673 GN=LOC111018606 PE=3 SV=1)

HSP 1 Score: 319 bits (817), Expect = 2.26e-109
Identity = 154/179 (86.03%), Postives = 165/179 (92.18%), Query Frame = 0 

Query: 3   SSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNNDITTLASNGSRVKCMKVW 62
           SSIVSSAAVASVNRASPAQASMVAPF GLKS A FPVTRK NDITTLA+NG RV+CMKVW
Sbjct: 4   SSIVSSAAVASVNRASPAQASMVAPFTGLKSAAAFPVTRKTNDITTLANNGGRVQCMKVW 63

Query: 63  PPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYYDG 122
           PPLG KKFETLSYLPD+T  QLLKEI YL+RSGW+PCIEFELE GFVYRE+H+SPGYYDG
Sbjct: 64  PPLGKKKFETLSYLPDMTETQLLKEIDYLIRSGWIPCIEFELEHGFVYREHHKSPGYYDG 123

Query: 123 RYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPASY 181
           RYWTMWKLPM+GCTD +QV  EIEEAKKEYP+AFIRVIGFDN RQVQCISFIVYKP+SY
Sbjct: 124 RYWTMWKLPMYGCTDASQVVKEIEEAKKEYPSAFIRVIGFDNKRQVQCISFIVYKPSSY 182

[Close]
BLAST of Cp4.1LG01g13630 vs. TAIR 10
Match: AT5G38430.1 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 283.9 bits (725), Expect = 9.2e-77
Identity = 135/182 (74.18%), Postives = 154/182 (84.62%), Query Frame = 0 

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRK-NNDITTLASNGSRVKCM 60
           MASS++SSAAV +    SPAQA+MVAPF GLKS+A FPVTRK NNDIT++ SNG RV CM
Sbjct: 1   MASSMLSSAAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGY 120
           KVWPP+G KKFETLSYLPDLT  +L KE+ YLLR+ W+PC+EFELE GFVYRE+  +PGY
Sbjct: 61  KVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPA 180
           YDGRYWTMWKLP+FGCTD AQV  E+EE KKEYP AFIR+IGFDN RQVQCISFI YKP 
Sbjct: 121 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 178

Query: 181 SY 182
           S+
Sbjct: 181 SF 178

[Close]
BLAST of Cp4.1LG01g13630 vs. TAIR 10
Match: AT1G67090.1 (ribulose bisphosphate carboxylase small chain 1A )

HSP 1 Score: 281.6 bits (719), Expect = 4.6e-76
Identity = 133/182 (73.08%), Postives = 153/182 (84.07%), Query Frame = 0 

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRK-NNDITTLASNGSRVKCM 60
           MASS++SSA +     ASPAQA+MVAPF GLKS+A FP TRK NNDIT++ SNG RV CM
Sbjct: 1   MASSMLSSATMV----ASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGY 120
           +VWPP+G KKFETLSYLPDLT  +L KE+ YL+R+ W+PC+EFELE GFVYRE+  SPGY
Sbjct: 61  QVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPA 180
           YDGRYWTMWKLP+FGCTD AQV  E+EE KKEYPNAFIR+IGFDN RQVQCISFI YKP 
Sbjct: 121 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPP 178

Query: 181 SY 182
           S+
Sbjct: 181 SF 178

[Close]
BLAST of Cp4.1LG01g13630 vs. TAIR 10
Match: AT5G38410.1 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 281.6 bits (719), Expect = 4.6e-76
Identity = 134/182 (73.63%), Postives = 154/182 (84.62%), Query Frame = 0 

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRK-NNDITTLASNGSRVKCM 60
           MASS++SSAAV +    SPAQA+MVAPF GLKS+A FPVTRK N DIT++ASNG RV CM
Sbjct: 1   MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGY 120
           KVWPP+G KKFETLSYLPDL+  +L KE+ YLLR+ W+PC+EFELE GFVYRE+  +PGY
Sbjct: 61  KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPA 180
           YDGRYWTMWKLP+FGCTD AQV  E+EE KKEYP AFIR+IGFDN RQVQCISFI YKP 
Sbjct: 121 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 178

Query: 181 SY 182
           S+
Sbjct: 181 SF 178

[Close]
BLAST of Cp4.1LG01g13630 vs. TAIR 10
Match: AT5G38420.1 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 280.0 bits (715), Expect = 1.3e-75
Identity = 133/182 (73.08%), Postives = 152/182 (83.52%), Query Frame = 0 

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRK-NNDITTLASNGSRVKCM 60
           MASS+ SS AV +    SPAQA+MVAPF GLKS+A FPVTRK NNDIT++ SNG RV CM
Sbjct: 1   MASSMFSSTAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGY 120
           KVWPP+G KKFETLSYLPDL+  +L KE+ YLLR+ W+PC+EFELE GFVYRE+  +PGY
Sbjct: 61  KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPA 180
           YDGRYWTMWKLP+FGCTD AQV  E+EE KKEYP AFIR+IGFDN RQVQCISFI YKP 
Sbjct: 121 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 178

Query: 181 SY 182
           S+
Sbjct: 181 SF 178

[Close]
BLAST of Cp4.1LG01g13630 vs. TAIR 10
Match: AT5G38410.3 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 275.4 bits (703), Expect = 3.3e-74
Identity = 134/187 (71.66%), Postives = 154/187 (82.35%), Query Frame = 0 

Query: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRK-NNDITTLASNGSRVKCM 60
           MASS++SSAAV +    SPAQA+MVAPF GLKS+A FPVTRK N DIT++ASNG RV CM
Sbjct: 1   MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELE-----KGFVYRENH 120
           KVWPP+G KKFETLSYLPDL+  +L KE+ YLLR+ W+PC+EFELE      GFVYRE+ 
Sbjct: 61  KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEVINTKHGFVYREHG 120

Query: 121 RSPGYYDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFI 180
            +PGYYDGRYWTMWKLP+FGCTD AQV  E+EE KKEYP AFIR+IGFDN RQVQCISFI
Sbjct: 121 NTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFI 180

Query: 181 VYKPASY 182
            YKP S+
Sbjct: 181 AYKPPSF 183

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g13630 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P084743.4e-8483.24Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Cucumis sativu... [more]
P160323.0e-8078.45Ribulose bisphosphate carboxylase small subunit, chloroplastic 1 OS=Mesembryanth... [more]
P327642.5e-7977.05Ribulose bisphosphate carboxylase small subunit, chloroplastic 6 OS=Solanum tube... [more]
P240073.3e-7975.96Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Pyrus pyrifoli... [more]
P265762.1e-7876.92Ribulose bisphosphate carboxylase small subunit, chloroplastic 4 OS=Solanum tube... [more]
BLAST of Cp4.1LG01g13630 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023513414.11.60e-127100.00ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita pep... [more]
XP_022957356.16.28e-12598.34ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita mos... [more]
XP_023542956.11.48e-12396.13ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita pep... [more]
XP_022986878.16.03e-12396.69ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita max... [more]
XP_022945823.14.96e-12295.03ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita mos... [more]
BLAST of Cp4.1LG01g13630 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GZ013.04e-12598.34Ribulose bisphosphate carboxylase small subunit OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1JHU02.92e-12396.69Ribulose bisphosphate carboxylase small subunit OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1G2272.40e-12295.03Ribulose bisphosphate carboxylase small subunit OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1HZN66.61e-12093.37Ribulose bisphosphate carboxylase small subunit OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1D9J42.26e-10986.03Ribulose bisphosphate carboxylase small subunit OS=Momordica charantia OX=3673 G... [more]
BLAST of Cp4.1LG01g13630 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G38430.19.2e-7774.18Ribulose bisphosphate carboxylase (small chain) family protein [more]
AT1G67090.14.6e-7673.08ribulose bisphosphate carboxylase small chain 1A [more]
AT5G38410.14.6e-7673.63Ribulose bisphosphate carboxylase (small chain) family protein [more]
AT5G38420.11.3e-7573.08Ribulose bisphosphate carboxylase (small chain) family protein [more]
AT5G38410.33.3e-7471.66Ribulose bisphosphate carboxylase (small chain) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024681Ribulose bisphosphate carboxylase, small subunitPRINTSPR00152RUBISCOSMALLcoord: 118..147
score: 82.44
coord: 152..178
score: 82.24
coord: 21..38
score: 73.12
coord: 68..94
score: 71.96
coord: 96..111
score: 69.56
coord: 47..65
score: 66.21
IPR000894Ribulose bisphosphate carboxylase small subunit, domainSMARTSM00961RuBisCO_small_2_acoord: 69..178
e-value: 1.1E-40
score: 151.2
IPR000894Ribulose bisphosphate carboxylase small subunit, domainPFAMPF00101RuBisCO_smallcoord: 70..178
e-value: 1.3E-39
score: 134.1
IPR000894Ribulose bisphosphate carboxylase small subunit, domainCDDcd03527RuBisCO_smallcoord: 68..178
e-value: 3.36622E-62
score: 185.538
IPR036385Ribulose bisphosphate carboxylase, small subunit superfamilyGENE3D3.30.190.10Ribulose bisphosphate carboxylase, small subunitcoord: 59..181
e-value: 3.5E-61
score: 206.7
IPR036385Ribulose bisphosphate carboxylase, small subunit superfamilySUPERFAMILY55239RuBisCO, small subunitcoord: 59..180
IPR024680Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminalPFAMPF12338RbcScoord: 2..44
e-value: 2.0E-24
score: 85.5
NoneNo IPR availablePANTHERPTHR31262RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTICcoord: 1..181
NoneNo IPR availablePANTHERPTHR31262:SF14RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTICcoord: 1..181

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g13630.1Cp4.1LG01g13630.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009853 photorespiration
biological_process GO:0019253 reductive pentose-phosphate cycle
cellular_component GO:0009507 chloroplast
cellular_component GO:0009506 plasmodesma