Cp4.1LG01g13200 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g13200
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG01: 8384186 .. 8385363 (-)
RNA-Seq ExpressionCp4.1LG01g13200
SyntenyCp4.1LG01g13200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCAGATCGGGATAAAGCTTGTTTCATGACATTACGAAAGGAAAATGGAGGAGGATCTGGAGGACGAGGAGGTGAATTGGAAGCCATGGCTGTGGTGAGTTTCAATGCTTGTGATCGTCGCTCACTTATAATGTCTTAAGAGATAGCTTTGGGAAGAAAAGTTATATTCCCACCTAGCTACTAAATATAAATTCGAAATATTTTTACTATTTTTCCCTCTTATATACACATTAAAAACAATAATAATACCAATATAAACATAAATTTTTTTGAATTATGGAATCTAAATGTATGCTTAAAATTAAGAACATGTATAAGTTATAACCGAAAGAAACAAAAAAAGAGTAAAGTGAGTTTCTTGTGGGGAAAGTTTCTAAGTAATTTGGTAGCAAAGAGAAGTGAAGTCAAGTAGTTGCTTTTCTTAGTGGAAAGTGGGTCAGGGGATGGGGTCTTTATATGTTGGTGGAATGTGAGGCACACACATTTCCATGGCTCTTTGGATTCTCTTTCATTTACTCACTTTTTCTTTACTCTTTAGTTCCTCTATCCTATCAGTGCAAATTCCCAGAAGCTTCAAAGATCAACAGCCATGCTTTATGAAGTTTCCTTGAAGATTCTCGTATGGACTTTTTTTTTTTCTTGGATCAAGTCTAGATAAGAAGCTTCCCAGCAGAAGCAGCTTAGAATGAACTCTTCAACAACTATAAATACGTCTAAACAACACAGATGCGCAATGAGGTTCCCTCATATTGTCCAGCAATGAAGAACGCTGGAGCTATCAATATGAGTCCAGAGACTTCTTTTCCCCAGCATTTTCACATCCTTGGTAAGGCATGTTCAAGATTGGACATTTCAACCAATCTGATGTACTGTATATTGTGCTGCTCCTTCAAAACAGTGACCCTCATTCTCTTGTTTCCTTATGAGCAAGTGAATGGGAATCCTGTGCCTACTGTAATCTTCAAAGGCCTTCCATCAACTTTCCATGCCTTTCTACTTTCAACTGTGATGGCATTCTCAGGCGCATTTAACGCCTTGATGTTTTCTGCTAATAAGCCAAAAATTGCCAGGTTTTGCAGCTACTATTCTATGGCATTTATGGCCTCAGCTGTAGTTTTATTGATTTGGGCTGTGTATCAGACGGTTTTTAACCGGAGACAATGGCAGGATTAA

mRNA sequence

ATGGAAGCAGATCGGGATAAAGCTTGTTTCATGACATTACGAAAGGAAAATGGAGGAGGATCTGGAGGACGAGGAGGTGAATTGGAAGCCATGGCTGTGTTCCTCTATCCTATCAGTGCAAATTCCCAGAAGCTTCAAAGATCAACAGCCATGCTTTATGAAGTTTCCTTGAAGATTCTCATGCGCAATGAGGTTCCCTCATATTGTCCAGCAATGAAGAACGCTGGAGCTATCAATATGAGTCCAGAGACTTCTTTTCCCCAGCATTTTCACATCCTTGTGACCCTCATTCTCTTGTTTCCTTATGAGCAAGTGAATGGGAATCCTGTGCCTACTGTAATCTTCAAAGGCCTTCCATCAACTTTCCATGCCTTTCTACTTTCAACTGTGATGGCATTCTCAGGCGCATTTAACGCCTTGATGTTTTCTGCTAATAAGCCAAAAATTGCCAGGTTTTGCAGCTACTATTCTATGGCATTTATGGCCTCAGCTGTAGTTTTATTGATTTGGGCTGTGTATCAGACGGTTTTTAACCGGAGACAATGGCAGGATTAA

Coding sequence (CDS)

ATGGAAGCAGATCGGGATAAAGCTTGTTTCATGACATTACGAAAGGAAAATGGAGGAGGATCTGGAGGACGAGGAGGTGAATTGGAAGCCATGGCTGTGTTCCTCTATCCTATCAGTGCAAATTCCCAGAAGCTTCAAAGATCAACAGCCATGCTTTATGAAGTTTCCTTGAAGATTCTCATGCGCAATGAGGTTCCCTCATATTGTCCAGCAATGAAGAACGCTGGAGCTATCAATATGAGTCCAGAGACTTCTTTTCCCCAGCATTTTCACATCCTTGTGACCCTCATTCTCTTGTTTCCTTATGAGCAAGTGAATGGGAATCCTGTGCCTACTGTAATCTTCAAAGGCCTTCCATCAACTTTCCATGCCTTTCTACTTTCAACTGTGATGGCATTCTCAGGCGCATTTAACGCCTTGATGTTTTCTGCTAATAAGCCAAAAATTGCCAGGTTTTGCAGCTACTATTCTATGGCATTTATGGCCTCAGCTGTAGTTTTATTGATTTGGGCTGTGTATCAGACGGTTTTTAACCGGAGACAATGGCAGGATTAA

Protein sequence

MEADRDKACFMTLRKENGGGSGGRGGELEAMAVFLYPISANSQKLQRSTAMLYEVSLKILMRNEVPSYCPAMKNAGAINMSPETSFPQHFHILVTLILLFPYEQVNGNPVPTVIFKGLPSTFHAFLLSTVMAFSGAFNALMFSANKPKIARFCSYYSMAFMASAVVLLIWAVYQTVFNRRQWQD
Homology
BLAST of Cp4.1LG01g13200 vs. NCBI nr
Match: XP_022992466.1 (uncharacterized protein LOC111488762 [Cucurbita maxima])

HSP 1 Score: 230 bits (586), Expect = 6.30e-74
Identity = 119/145 (82.07%), Postives = 120/145 (82.76%), Query Frame = 0

Query: 64  EVPSYCPAMKNAGAINMSPETSFPQHFHIL------------------------VTLILL 123
           EVPSYCPAMKNAGAINMSPETSFPQHFHIL                        VTLILL
Sbjct: 31  EVPSYCPAMKNAGAINMSPETSFPQHFHILGKACSRLDISTNLMYCILCCSFKTVTLILL 90

Query: 124 FPYEQVNGNPVPTVIFKGLPSTFHAFLLSTVMAFSGAFNALMFSANKPKIARFCSYYSMA 183
           FPYEQVNGNPVPT+IFKGLPSTFHAFLLSTVMAFSGAFNALM SANKPKIARFCSYYSMA
Sbjct: 91  FPYEQVNGNPVPTIIFKGLPSTFHAFLLSTVMAFSGAFNALMLSANKPKIARFCSYYSMA 150

BLAST of Cp4.1LG01g13200 vs. NCBI nr
Match: KAG6601352.1 (hypothetical protein SDJN03_06585, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 212 bits (540), Expect = 1.79e-67
Identity = 112/137 (81.75%), Postives = 112/137 (81.75%), Query Frame = 0

Query: 72  MKNAGAINMSPETSFPQHFHIL------------------------VTLILLFPYEQVNG 131
           MKNAGAINMSPETSFPQHFHIL                        VTLILLFPYEQVNG
Sbjct: 1   MKNAGAINMSPETSFPQHFHILGKACSRLDISTNLMYCILCCSFKTVTLILLFPYEQVNG 60

Query: 132 NPVPTVIFKGLPSTFHAFLLSTVMAFSGAFNALMFSANKPKIARFCSYYSMAFMASAVVL 184
           NPVPTVIFKGLPSTFHAFLLSTVMAFSGAFNALM SANKPKIARFCSYYSMAFMASAVVL
Sbjct: 61  NPVPTVIFKGLPSTFHAFLLSTVMAFSGAFNALMLSANKPKIARFCSYYSMAFMASAVVL 120

BLAST of Cp4.1LG01g13200 vs. NCBI nr
Match: KAE8648779.1 (hypothetical protein Csa_009128 [Cucumis sativus])

HSP 1 Score: 155 bits (393), Expect = 1.73e-45
Identity = 81/119 (68.07%), Postives = 88/119 (73.95%), Query Frame = 0

Query: 64  EVPSYCPAMKNAGAINMSPETSFPQHFHILVTLILLFPYEQVNGNPVPTVIFKGLPSTFH 123
           +VP Y   MKN   IN SP+T F QHFHILV           NGN VP +IFKGLPSTFH
Sbjct: 2   KVPIYFLTMKNRRDINKSPDTCFAQHFHILV-----------NGNLVPAIIFKGLPSTFH 61

Query: 124 AFLLSTVMAFSGAFNALMFSANKPKIARFCSYYSMAFMASAVVLLIWAVYQTVFNRRQW 182
           AFLLS VMAFSGAFNALM + NKPKIA+FCSYYS+ FM SAVVL  WAV+QTVFN RQW
Sbjct: 62  AFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSLGFMVSAVVLFFWAVFQTVFNLRQW 109

BLAST of Cp4.1LG01g13200 vs. NCBI nr
Match: XP_040861221.1 (uncharacterized protein LOC121172803 [Glycine max] >KAG5059707.1 hypothetical protein JHK87_000736 [Glycine soja] >KAG5088117.1 hypothetical protein JHK86_000729 [Glycine max] >KRH75196.1 hypothetical protein GLYMA_01G069000v4 [Glycine max] >RZC28841.1 hypothetical protein D0Y65_000706 [Glycine soja])

HSP 1 Score: 96.3 bits (238), Expect = 5.42e-22
Identity = 44/86 (51.16%), Postives = 64/86 (74.42%), Query Frame = 0

Query: 93  LVTLILLFPYEQVNGNPVPTVIFKGLPSTFHAFLLSTVMAFSGAFNALMFSANKPKIARF 152
           ++T++L  PYE ++ NPVPT++FKG P TFHAF++  + AFSGA NAL+ + NK + +R 
Sbjct: 32  VITILLQLPYEYIDNNPVPTIVFKGRPRTFHAFIICIIFAFSGATNALV-AFNKSRFSRL 91

Query: 153 CSYYSMAFMASAVVLLIWAVYQTVFN 178
           C YY+MA MASA+ +L+WA+  T  N
Sbjct: 92  CGYYAMASMASALAILLWALCCTCIN 116

BLAST of Cp4.1LG01g13200 vs. NCBI nr
Match: KYP48304.1 (hypothetical protein KK1_029996 [Cajanus cajan])

HSP 1 Score: 95.9 bits (237), Expect = 7.65e-22
Identity = 45/83 (54.22%), Postives = 63/83 (75.90%), Query Frame = 0

Query: 93  LVTLILLFPYEQVNGNPVPTVIFKGLPSTFHAFLLSTVMAFSGAFNALMFSANKPKIARF 152
           ++T++L  PYE ++ NPVPTVIFKG P  FHAF++  + AFSG+ NAL+ + NK   ++F
Sbjct: 32  VITILLQLPYEYIDNNPVPTVIFKGHPRIFHAFIICIIFAFSGSTNALV-AFNKSTFSKF 91

Query: 153 CSYYSMAFMASAVVLLIWAVYQT 175
           C YY+MA MASA+ +L+WAVY T
Sbjct: 92  CGYYAMASMASAMAILLWAVYCT 113

BLAST of Cp4.1LG01g13200 vs. ExPASy TrEMBL
Match: A0A6J1JTM5 (uncharacterized protein LOC111488762 OS=Cucurbita maxima OX=3661 GN=LOC111488762 PE=4 SV=1)

HSP 1 Score: 230 bits (586), Expect = 3.05e-74
Identity = 119/145 (82.07%), Postives = 120/145 (82.76%), Query Frame = 0

Query: 64  EVPSYCPAMKNAGAINMSPETSFPQHFHIL------------------------VTLILL 123
           EVPSYCPAMKNAGAINMSPETSFPQHFHIL                        VTLILL
Sbjct: 31  EVPSYCPAMKNAGAINMSPETSFPQHFHILGKACSRLDISTNLMYCILCCSFKTVTLILL 90

Query: 124 FPYEQVNGNPVPTVIFKGLPSTFHAFLLSTVMAFSGAFNALMFSANKPKIARFCSYYSMA 183
           FPYEQVNGNPVPT+IFKGLPSTFHAFLLSTVMAFSGAFNALM SANKPKIARFCSYYSMA
Sbjct: 91  FPYEQVNGNPVPTIIFKGLPSTFHAFLLSTVMAFSGAFNALMLSANKPKIARFCSYYSMA 150

BLAST of Cp4.1LG01g13200 vs. ExPASy TrEMBL
Match: A0A0A0KT20 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G607970 PE=4 SV=1)

HSP 1 Score: 172 bits (437), Expect = 5.27e-52
Identity = 92/143 (64.34%), Postives = 99/143 (69.23%), Query Frame = 0

Query: 64  EVPSYCPAMKNAGAINMSPETSFPQHFHIL------------------------VTLILL 123
           +VP Y   MKN   IN SP+T F QHFHIL                        VTLILL
Sbjct: 2   KVPIYFLTMKNRRDINKSPDTCFAQHFHILGKTCSSLDISTNLLYSILCLSFKTVTLILL 61

Query: 124 FPYEQVNGNPVPTVIFKGLPSTFHAFLLSTVMAFSGAFNALMFSANKPKIARFCSYYSMA 182
           FPYEQVNGN VP +IFKGLPSTFHAFLLS VMAFSGAFNALM + NKPKIA+FCSYYS+ 
Sbjct: 62  FPYEQVNGNLVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSLG 121

BLAST of Cp4.1LG01g13200 vs. ExPASy TrEMBL
Match: A0A5B7B2W8 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_032285 PE=4 SV=1)

HSP 1 Score: 101 bits (252), Expect = 4.52e-24
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 0

Query: 96  LILLFPYEQVNGNPVPTVIFKGLPSTFHAFLLSTVMAFSGAFNALMFSANKPKIARFCSY 155
           +++  PYE ++GNPVPT+IFKGLPS FHAFL+  + AFSGA+  LM   +KP++A FC Y
Sbjct: 55  ILIRLPYENIDGNPVPTIIFKGLPSAFHAFLICIIFAFSGAYCGLMMIPHKPRLATFCGY 114

Query: 156 YSMAFMASAVVLLIWA 171
            SMA MASAV LLIWA
Sbjct: 115 CSMASMASAVALLIWA 130

BLAST of Cp4.1LG01g13200 vs. ExPASy TrEMBL
Match: A0A5B7B649 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_032284 PE=4 SV=1)

HSP 1 Score: 100 bits (250), Expect = 1.09e-23
Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 0

Query: 96  LILLFPYEQVNGNPVPTVIFKGLPSTFHAFLLSTVMAFSGAFNALMFSANKPKIARFCSY 155
           +++  PYE ++GNPVPT+IFKGLPS FHAFL+  + AFSGA+  LM   +KP++A FC Y
Sbjct: 62  ILIRLPYENIDGNPVPTIIFKGLPSAFHAFLICIIFAFSGAYCGLMMIPHKPRLATFCGY 121

Query: 156 YSMAFMASAVVLLIWA 171
            SMA MASAV L+IWA
Sbjct: 122 CSMASMASAVALMIWA 137

BLAST of Cp4.1LG01g13200 vs. ExPASy TrEMBL
Match: A0A5B7B2L8 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_032286 PE=4 SV=1)

HSP 1 Score: 100 bits (250), Expect = 1.54e-23
Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 0

Query: 96  LILLFPYEQVNGNPVPTVIFKGLPSTFHAFLLSTVMAFSGAFNALMFSANKPKIARFCSY 155
           +++  PYE ++GNPVPT+IFKGLPS FHAFL+  + AFSGA+  LM   +KP++A FC Y
Sbjct: 61  ILIRLPYENIDGNPVPTIIFKGLPSAFHAFLICIIFAFSGAYCGLMMIPHKPRLATFCGY 120

Query: 156 YSMAFMASAVVLLIWA 171
            SMA MASAV L+IWA
Sbjct: 121 CSMASMASAVALMIWA 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022992466.16.30e-7482.07uncharacterized protein LOC111488762 [Cucurbita maxima][more]
KAG6601352.11.79e-6781.75hypothetical protein SDJN03_06585, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8648779.11.73e-4568.07hypothetical protein Csa_009128 [Cucumis sativus][more]
XP_040861221.15.42e-2251.16uncharacterized protein LOC121172803 [Glycine max] >KAG5059707.1 hypothetical pr... [more]
KYP48304.17.65e-2254.22hypothetical protein KK1_029996 [Cajanus cajan][more]
Match NameE-valueIdentityDescription
A0A6J1JTM53.05e-7482.07uncharacterized protein LOC111488762 OS=Cucurbita maxima OX=3661 GN=LOC111488762... [more]
A0A0A0KT205.27e-5264.34Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G607970 PE=4 SV=1[more]
A0A5B7B2W84.52e-2461.84Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_032285... [more]
A0A5B7B6491.09e-2360.53Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_032284... [more]
A0A5B7B2L81.54e-2360.53Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_032286... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g13200.1Cp4.1LG01g13200.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane