Cp4.1LG01g13130 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g13130
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG01: 8420151 .. 8421364 (-)
RNA-Seq ExpressionCp4.1LG01g13130
SyntenyCp4.1LG01g13130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATGGGTTTGATACTCATGGCCATGCTTTGCTGTGTTTCTCTATTGATTCTCTCGGTACCTTTTGCTTCCTCGCATGCTCTTGACCAGTCTTCTCCCTTGCAAGGTGTGTATACTCAGTCATGTCTCTCTCCTTCTTCTACACTTTGTTCTTTGTTCTTCTCTCTGAGAATAATGGAGTTATTTGTGATCTTGCAGTAACTGAAGCAGCAGTGCATTCTCCTCGTCTCGTTTTGTCAAGGAAGTTCAAAATGTTGGAAGAAGCGAAGGTTTGTTTGAGAATGCTTTTGAAATAAGTTATAAAAGAACATTACGAACATAATCATAGAGCCGGTTTGGAATGACTTTTCTAATTCGTAAAACGATTTTTGAACTAAGTTTTTCATTGTTAATGTCCAACTGTTCTAAACCATCTGGGCATTGTTCTATCTGTGTTCTTTCTCTGCTGTTGAAGTTGTGATATACATCACTGATGATTTTACTGGAAACAGGTTGTTGAAGCTCACGGATTCCAAGCTTCCAAACAAGAAGATGAGCTGAAGGAAAATGTTTCAGGTATGCAATTTCAAAGAAAACCCAAAAGTATGCAGGTTCTTAAATAACTCATTCCTGTCATATCTGTAAATCTTGCCAGTTCTTTGACTAAAAACTGCTGCAACATTGCTTCCTTGAAGATGGAAAATTTGTGGGCTTGCCATTTTTGAGTAACAATACATTAAATAAATGTACTTTCTTTTTCACATTTTTGATACATATCTTCACTTTCAGATATTTTTCCTGCCATTTTTGTTCTCAAATCACTTCCTGAATATCATTTGTTTTGATTAGTTGGCCTTTTACTTTAGTCATTCGTTCATCGTGTTCGTCCCATCAATAAGCGGTGTAATAAGTACATTTTAATTATCGTTCATTATGTTGTCATATCAATAAGCGGTCAGAGTTTGTAGATTGAATTTCTGTCTAAAATGAGTACATGTCAATTATCGTTCATCGTGTTGGAAGTGAATATTTGGTAATATTTTTTAATGAATGCATTTGAGATATGGTATTAATTTAATCGTCATATTTACAGGTCAGGCTTATAAAAGGGAGGAAAACAAAGGGAAGGGGAGAAAGTGGGGGAATGTGGACGACATGTCGTCGCGGTTTTTCACAATGGACTACGCTCACATAAAACGGCGCCGTCCCGTACATAACATGTCTCGCCAACGTCCT

mRNA sequence

ATATGGGTTTGATACTCATGGCCATGCTTTGCTGTGTTTCTCTATTGATTCTCTCGGTACCTTTTGCTTCCTCGCATGCTCTTGACCAGTCTTCTCCCTTGCAAGTAACTGAAGCAGCAGTGCATTCTCCTCGTCTCGTTTTGTCAAGGAAGTTCAAAATGTTGGAAGAAGCGAAGGTTGTTGAAGCTCACGGATTCCAAGCTTCCAAACAAGAAGATGAGCTGAAGGAAAATGTTTCAGGTCAGGCTTATAAAAGGGAGGAAAACAAAGGGAAGGGGAGAAAGTGGGGGAATGTGGACGACATGTCGTCGCGGTTTTTCACAATGGACTACGCTCACATAAAACGGCGCCGTCCCGTACATAACATGTCTCGCCAACGTCCT

Coding sequence (CDS)

ATGGGTTTGATACTCATGGCCATGCTTTGCTGTGTTTCTCTATTGATTCTCTCGGTACCTTTTGCTTCCTCGCATGCTCTTGACCAGTCTTCTCCCTTGCAAGTAACTGAAGCAGCAGTGCATTCTCCTCGTCTCGTTTTGTCAAGGAAGTTCAAAATGTTGGAAGAAGCGAAGGTTGTTGAAGCTCACGGATTCCAAGCTTCCAAACAAGAAGATGAGCTGAAGGAAAATGTTTCAGGTCAGGCTTATAAAAGGGAGGAAAACAAAGGGAAGGGGAGAAAGTGGGGGAATGTGGACGACATGTCGTCGCGGTTTTTCACAATGGACTACGCTCACATAAAACGGCGCCGTCCCGTACATAACATGTCTCGCCAACGTCCT

Protein sequence

MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQVTEAAVHSPRLVLSRKFKMLEEAKVVEAHGFQASKQEDELKENVSGQAYKREENKGKGRKWGNVDDMSSRFFTMDYAHIKRRRPVHNMSRQRP
Homology
BLAST of Cp4.1LG01g13130 vs. NCBI nr
Match: XP_023525366.1 (uncharacterized protein LOC111788986 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 239 bits (611), Expect = 2.04e-79
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0

Query: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQVTEAAVHSPRLVLSRKFKMLEEAKVV 60
           MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQVTEAAVHSPRLVLSRKFKMLEEAKVV
Sbjct: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQVTEAAVHSPRLVLSRKFKMLEEAKVV 60

Query: 61  EAHGFQASKQEDELKENVSGQAYKREENKGKGRKWGNVDDMSSRFFTMDYAHIKRRRPVH 120
           EAHGFQASKQEDELKENVSGQAYKREENKGKGRKWGNVDDMSSRFFTMDYAHIKRRRPVH
Sbjct: 61  EAHGFQASKQEDELKENVSGQAYKREENKGKGRKWGNVDDMSSRFFTMDYAHIKRRRPVH 120

Query: 121 NMSRQRP 127
           NMSRQRP
Sbjct: 121 NMSRQRP 127

BLAST of Cp4.1LG01g13130 vs. NCBI nr
Match: XP_022956442.1 (uncharacterized protein LOC111458171 [Cucurbita moschata] >KAG7032145.1 hypothetical protein SDJN02_06188 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 224 bits (571), Expect = 2.48e-73
Identity = 122/127 (96.06%), Postives = 122/127 (96.06%), Query Frame = 0

Query: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQVTEAAVHSPRLVLSRKFKMLEEAKVV 60
           MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQ TEA VHSPRLVLSRKFKMLEEAKVV
Sbjct: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQATEA-VHSPRLVLSRKFKMLEEAKVV 60

Query: 61  EAHGFQASKQEDELKENVSGQAYKREENKGKGRKWGNVDDMSSRFFTMDYAHIKRRRPVH 120
           EAHGFQASKQEDE KE VSGQAYKREENKGKGRKWGNV DMSSRFFTMDYAHIKRRRPVH
Sbjct: 61  EAHGFQASKQEDEQKETVSGQAYKREENKGKGRKWGNVADMSSRFFTMDYAHIKRRRPVH 120

Query: 121 NMSRQRP 127
           NMSRQRP
Sbjct: 121 NMSRQRP 126

BLAST of Cp4.1LG01g13130 vs. NCBI nr
Match: XP_022977309.1 (uncharacterized protein LOC111477668 [Cucurbita maxima])

HSP 1 Score: 220 bits (560), Expect = 1.18e-71
Identity = 120/127 (94.49%), Postives = 120/127 (94.49%), Query Frame = 0

Query: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQVTEAAVHSPRLVLSRKFKMLEEAKVV 60
           MGLI MAMLCCVSLLILSVPFASSHALDQSSPLQ TEA VHSPRLVLSRKFKMLEEAKVV
Sbjct: 1   MGLIFMAMLCCVSLLILSVPFASSHALDQSSPLQETEA-VHSPRLVLSRKFKMLEEAKVV 60

Query: 61  EAHGFQASKQEDELKENVSGQAYKREENKGKGRKWGNVDDMSSRFFTMDYAHIKRRRPVH 120
           EAHGFQASKQEDE KENVSGQ YKREENKGKGRKWGNV DMSSRF TMDYAHIKRRRPVH
Sbjct: 61  EAHGFQASKQEDEQKENVSGQPYKREENKGKGRKWGNVADMSSRFLTMDYAHIKRRRPVH 120

Query: 121 NMSRQRP 127
           NMSRQRP
Sbjct: 121 NMSRQRP 126

BLAST of Cp4.1LG01g13130 vs. NCBI nr
Match: KAG6601362.1 (hypothetical protein SDJN03_06595, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 209 bits (533), Expect = 1.23e-67
Identity = 113/120 (94.17%), Postives = 114/120 (95.00%), Query Frame = 0

Query: 8   MLCCVSLLILSVPFASSHALDQSSPLQVTEAAVHSPRLVLSRKFKMLEEAKVVEAHGFQA 67
           MLCCVSLLILSVPFASSHALDQSSPLQ TEA VHSPRLVLSRKFKMLEEAKVVEAH FQA
Sbjct: 1   MLCCVSLLILSVPFASSHALDQSSPLQATEA-VHSPRLVLSRKFKMLEEAKVVEAHRFQA 60

Query: 68  SKQEDELKENVSGQAYKREENKGKGRKWGNVDDMSSRFFTMDYAHIKRRRPVHNMSRQRP 127
           SKQEDE KE VSGQAYKREENKGKGRKWGN+ DMSSRFFTMDYAHIKRRRPVHNMSRQRP
Sbjct: 61  SKQEDEQKETVSGQAYKREENKGKGRKWGNMADMSSRFFTMDYAHIKRRRPVHNMSRQRP 119

BLAST of Cp4.1LG01g13130 vs. NCBI nr
Match: KAA0034486.1 (putative root meristem growth factor 8 [Cucumis melo var. makuwa] >TYK09040.1 putative root meristem growth factor 8 [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (392), Expect = 5.46e-46
Identity = 94/132 (71.21%), Postives = 104/132 (78.79%), Query Frame = 0

Query: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQVTEAAVHSPRLVLSRKFKMLEEA--- 60
           MGLI+MA+LCCVS+LIL +P ASSHALDQSSPLQ TEA VHSPRLVL RKFKML+EA   
Sbjct: 1   MGLIVMAILCCVSILILLIPSASSHALDQSSPLQATEA-VHSPRLVLGRKFKMLKEAARL 60

Query: 61  -KVVEAHGFQASKQEDELKENVSGQAYKREE-NKGKGRKWGNVDDMSSRFFTMDYAHIKR 120
            K VE  GFQ +KQ D  KENVSG+  K  + NK KGRK  NV DMSS+ FTMDYAH+KR
Sbjct: 61  DKRVETQGFQVAKQNDNHKENVSGEEEKGMKLNKRKGRKGVNVADMSSQIFTMDYAHLKR 120

Query: 121 RRPVHNMSRQRP 127
           RRPVHNMS  RP
Sbjct: 121 RRPVHNMSLNRP 131

BLAST of Cp4.1LG01g13130 vs. ExPASy TrEMBL
Match: A0A6J1GWC1 (uncharacterized protein LOC111458171 OS=Cucurbita moschata OX=3662 GN=LOC111458171 PE=4 SV=1)

HSP 1 Score: 224 bits (571), Expect = 1.20e-73
Identity = 122/127 (96.06%), Postives = 122/127 (96.06%), Query Frame = 0

Query: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQVTEAAVHSPRLVLSRKFKMLEEAKVV 60
           MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQ TEA VHSPRLVLSRKFKMLEEAKVV
Sbjct: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQATEA-VHSPRLVLSRKFKMLEEAKVV 60

Query: 61  EAHGFQASKQEDELKENVSGQAYKREENKGKGRKWGNVDDMSSRFFTMDYAHIKRRRPVH 120
           EAHGFQASKQEDE KE VSGQAYKREENKGKGRKWGNV DMSSRFFTMDYAHIKRRRPVH
Sbjct: 61  EAHGFQASKQEDEQKETVSGQAYKREENKGKGRKWGNVADMSSRFFTMDYAHIKRRRPVH 120

Query: 121 NMSRQRP 127
           NMSRQRP
Sbjct: 121 NMSRQRP 126

BLAST of Cp4.1LG01g13130 vs. ExPASy TrEMBL
Match: A0A6J1IR14 (uncharacterized protein LOC111477668 OS=Cucurbita maxima OX=3661 GN=LOC111477668 PE=4 SV=1)

HSP 1 Score: 220 bits (560), Expect = 5.72e-72
Identity = 120/127 (94.49%), Postives = 120/127 (94.49%), Query Frame = 0

Query: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQVTEAAVHSPRLVLSRKFKMLEEAKVV 60
           MGLI MAMLCCVSLLILSVPFASSHALDQSSPLQ TEA VHSPRLVLSRKFKMLEEAKVV
Sbjct: 1   MGLIFMAMLCCVSLLILSVPFASSHALDQSSPLQETEA-VHSPRLVLSRKFKMLEEAKVV 60

Query: 61  EAHGFQASKQEDELKENVSGQAYKREENKGKGRKWGNVDDMSSRFFTMDYAHIKRRRPVH 120
           EAHGFQASKQEDE KENVSGQ YKREENKGKGRKWGNV DMSSRF TMDYAHIKRRRPVH
Sbjct: 61  EAHGFQASKQEDEQKENVSGQPYKREENKGKGRKWGNVADMSSRFLTMDYAHIKRRRPVH 120

Query: 121 NMSRQRP 127
           NMSRQRP
Sbjct: 121 NMSRQRP 126

BLAST of Cp4.1LG01g13130 vs. ExPASy TrEMBL
Match: A0A0A0KWA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606860 PE=4 SV=1)

HSP 1 Score: 157 bits (396), Expect = 6.31e-47
Identity = 94/132 (71.21%), Postives = 106/132 (80.30%), Query Frame = 0

Query: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQVTEAAVHSPRLVLSRKFKMLEEA--- 60
           MGLI+MA+LCCVS+L+L +P ASSHALDQSSPLQ TE  VHSP LVL RKFKMLEEA   
Sbjct: 1   MGLIVMAILCCVSILVLLIPSASSHALDQSSPLQATEG-VHSP-LVLGRKFKMLEEAARV 60

Query: 61  -KVVEAHGFQASKQEDELKENVSGQAYKREE-NKGKGRKWGNVDDMSSRFFTMDYAHIKR 120
            K VEA GFQ +KQ+D  KENVSGQ  +  + NKGKGRKW  V DMSS+ FTMDYAH+KR
Sbjct: 61  DKKVEAQGFQVAKQKDNHKENVSGQEEQGTKLNKGKGRKWVKVADMSSQIFTMDYAHLKR 120

Query: 121 RRPVHNMSRQRP 127
           RRPVHNMS +RP
Sbjct: 121 RRPVHNMSLKRP 130

BLAST of Cp4.1LG01g13130 vs. ExPASy TrEMBL
Match: A0A5D3CCI7 (Putative root meristem growth factor 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00260 PE=4 SV=1)

HSP 1 Score: 155 bits (392), Expect = 2.64e-46
Identity = 94/132 (71.21%), Postives = 104/132 (78.79%), Query Frame = 0

Query: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQVTEAAVHSPRLVLSRKFKMLEEA--- 60
           MGLI+MA+LCCVS+LIL +P ASSHALDQSSPLQ TEA VHSPRLVL RKFKML+EA   
Sbjct: 1   MGLIVMAILCCVSILILLIPSASSHALDQSSPLQATEA-VHSPRLVLGRKFKMLKEAARL 60

Query: 61  -KVVEAHGFQASKQEDELKENVSGQAYKREE-NKGKGRKWGNVDDMSSRFFTMDYAHIKR 120
            K VE  GFQ +KQ D  KENVSG+  K  + NK KGRK  NV DMSS+ FTMDYAH+KR
Sbjct: 61  DKRVETQGFQVAKQNDNHKENVSGEEEKGMKLNKRKGRKGVNVADMSSQIFTMDYAHLKR 120

Query: 121 RRPVHNMSRQRP 127
           RRPVHNMS  RP
Sbjct: 121 RRPVHNMSLNRP 131

BLAST of Cp4.1LG01g13130 vs. ExPASy TrEMBL
Match: A0A6J1D6T9 (uncharacterized protein LOC111017571 OS=Momordica charantia OX=3673 GN=LOC111017571 PE=4 SV=1)

HSP 1 Score: 144 bits (364), Expect = 4.38e-42
Identity = 83/132 (62.88%), Postives = 99/132 (75.00%), Query Frame = 0

Query: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQVTEAAVHSPRLVLSRKFKMLEEAKVV 60
           MGLI+MA LCCVSLLIL +P+ASSHAL+QS  LQ TEA    P    +RKF+++EEA  V
Sbjct: 1   MGLIVMASLCCVSLLILLIPYASSHALEQSFHLQATEAVRFRP----TRKFRLMEEAGAV 60

Query: 61  EAHGFQASKQEDELKENVSGQAYKREE-----NKGKGRKWGNVDDMSSRFFTMDYAHIKR 120
           +AHG     Q D  ++NVSGQ YKRE+     ++ KGRKW +VDDMSSRFFTMDY H +R
Sbjct: 61  KAHGSPVPIQNDNHEDNVSGQPYKREQKGMNLSRRKGRKWLDVDDMSSRFFTMDYVHTRR 120

Query: 121 RRPVHNMSRQRP 127
           RRPVHNMSRQRP
Sbjct: 121 RRPVHNMSRQRP 128

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023525366.12.04e-79100.00uncharacterized protein LOC111788986 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022956442.12.48e-7396.06uncharacterized protein LOC111458171 [Cucurbita moschata] >KAG7032145.1 hypothet... [more]
XP_022977309.11.18e-7194.49uncharacterized protein LOC111477668 [Cucurbita maxima][more]
KAG6601362.11.23e-6794.17hypothetical protein SDJN03_06595, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0034486.15.46e-4671.21putative root meristem growth factor 8 [Cucumis melo var. makuwa] >TYK09040.1 pu... [more]
Match NameE-valueIdentityDescription
A0A6J1GWC11.20e-7396.06uncharacterized protein LOC111458171 OS=Cucurbita moschata OX=3662 GN=LOC1114581... [more]
A0A6J1IR145.72e-7294.49uncharacterized protein LOC111477668 OS=Cucurbita maxima OX=3661 GN=LOC111477668... [more]
A0A0A0KWA16.31e-4771.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606860 PE=4 SV=1[more]
A0A5D3CCI72.64e-4671.21Putative root meristem growth factor 8 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A6J1D6T94.38e-4262.88uncharacterized protein LOC111017571 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g13130.1Cp4.1LG01g13130.1mRNA