Cp4.1LG01g12430 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g12430
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	50S ribosomal protein L18
Location	Cp4.1LG01: 8788162 .. 8790195 (-)
RNA-Seq Expression	Cp4.1LG01g12430
Synteny	Cp4.1LG01g12430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATAAAAAGAGACAATTTTGAGAAGATATTTGAGGGTTGGACTTCAAGAAAAGGAAGAGAATTTCAACGTATACGCGGAGGAGGAAACGTATTTTCTCCTGCTGTCGCGAGGAGGCCAAGTTGCCGGCGGGGAGAATTTCAACGGCACACACAGCCAAGCCACATTCATTCCGGCGGAACACTGACTAGACTGGTAGCTTCACGTAGCTTACCGATGGTTTTTCTGCATTTCACTTAGCTAAAATCTTCTCTCCCAGGTAATCAAAACTTCTGGGTTGTGGGCCTTTTTCTTTCCTTATTTCCGTTGGGTGTAGCTATTCATGAGTCTTGTTTTCAATACGGTGATTGGGTTTTGATTGCCTTTGTGTTCTGGATTGTCAACCAATTTTTCAGGGATTGCGTGCAACGTGCTCGACGAAATTCCTGACTGACGAAGACCCTGTCGTACAACATATATTGGGCATAAAAATCATTTCAAGAATGCCCTCTTTACCTCTCAATACAATAAATTTTGAAAAAGTTAATGGTGGCATGCATTTTCTAAATGTTCCTGGTCTGCTATCGAAAACTTCTACCCCCTTCTGGTTCCAGTCAAAGCCATTTAACTTTCCCAGCTTGAAACGTAGACGTAAGTGAATCAATACGTGCATTAGCTCCTAATCTGTATGATAATCTGTGGTTCTGTTCTTGGACGATGTTGGACACAAACTGGCATATTTCTATTATACAAATTACTGGAACCAGATGGATTTTGTTTTATAACGAGTTCCTGCATTCCGTGTAGATTGCGATGTGAAGCCGTTGATGATCCAAGCAAGAGGAAACTCTAAAACAGAAAGTGCAAAAGTTAGAAATAGGAGGTTCCAGAAAAAGGTATGCACAAAATACATTTATACTAACATTGGAACTCTTTTAATTTTCTCATTACATTTGATGGTTTTCAACGCCAAGCAGTATAATGGCAGTTCGACAAAACCAAGGCTTTCAGTATTCTGTTCTGATAAGCAGTTGTATGCAATGCTGGTTGACGACCAGAACAAGAAGTGCCTGTTTTATGGAAGCACCTTACAGAAATCTATGCGTCCAAGTCCCTCATGCACCACCATCGTAAGTCTTCCTCAAAAGTCCTGTTAACAAACTACTATTAAATACAAAAGGGTCTGATTTCTTTTTTGTTGTTTTGGCGATTACAGGAAGCTGCTCAGCATGTTGGTGAAGAACTTGTGAAGGCATGTGAAGACTTGAACATACATGAAATATCATCTTACGATCGAAATGGATTTGCTCGTGGAGAGAAAATGCAAGCCTTTGAAATTGCAATTTCGGGCTATGGGTTCTTGCAACGATAGATATATGCCAAGAACTAAGCCAAGTTGTAAATGTAAATGCCTGTTATAATAACAAAGTCTGCTGTGTATCTCTTGTTAAAAGCCAAGGTGTCACGCCGGTGAGTGAATTATCGTTAGGACAATAAAACTCTGAGACACTCGATAGAAATCTATCGTTGATCAAATTTAACAGAAACCATTTTCAGCGCAAACATCACTGAAATCGAATTGTGATTATGCATGATGTGGTAAAATTCAATTGATCAGCTATTGTTACTATATACTAACTGTGCAGGCTACAACGCTCATTCTAACATCTCTCTCGGTTACTTGAAATGTTCAAAATTTCAAGCAACTCTATACTAAATATTCTTCTCTACCGTAACACCTAATTATACAGCAATTGTTAAGAGGGTGTAAAATTTCTCATGTTACCTCTTCTCTTTCAGGGGATCAATCCTGGTATGGTTGTTTAGTCTATCTGGTTTGTGATCGTCAGCATGGCTACTCAATTTCCAGGCTGCTTAGAACACAAGTCATCTTAGTTATCAGGACCACAGCATCTAACACCATTTCCTTCCTGAAGTTTTTGCCACAAACAGAGCATCTCCTGAGGTCCCTGATAGTGAGCAACCACATAATTATACTTGCAGCCTTCAATATGAATTCTCTCGTCCTTCTCGTAACGAATATCAAGGCCCTCTC

mRNA sequence

CAATAAAAAGAGACAATTTTGAGAAGATATTTGAGGGTTGGACTTCAAGAAAAGGAAGAGAATTTCAACGTATACGCGGAGGAGGAAACGTATTTTCTCCTGCTGTCGCGAGGAGGCCAAGTTGCCGGCGGGGAGAATTTCAACGGCACACACAGCCAAGCCACATTCATTCCGGCGGAACACTGACTAGACTGGTAGCTTCACGTAGCTTACCGATGGTTTTTCTGCATTTCACTTAGCTAAAATCTTCTCTCCCAGGGATTGCGTGCAACGTGCTCGACGAAATTCCTGACTGACGAAGACCCTGTCGTACAACATATATTGGGCATAAAAATCATTTCAAGAATGCCCTCTTTACCTCTCAATACAATAAATTTTGAAAAAGTTAATGGTGGCATGCATTTTCTAAATGTTCCTGGTCTGCTATCGAAAACTTCTACCCCCTTCTGGTTCCAGTCAAAGCCATTTAACTTTCCCAGCTTGAAACGTAGACATTGCGATGTGAAGCCGTTGATGATCCAAGCAAGAGGAAACTCTAAAACAGAAAGTGCAAAAGTTAGAAATAGGAGGTTCCAGAAAAAGTATAATGGCAGTTCGACAAAACCAAGGCTTTCAGTATTCTGTTCTGATAAGCAGTTGTATGCAATGCTGGTTGACGACCAGAACAAGAAGTGCCTGTTTTATGGAAGCACCTTACAGAAATCTATGCGTCCAAGTCCCTCATGCACCACCATCGAAGCTGCTCAGCATGTTGGTGAAGAACTTGTGAAGGCATGTGAAGACTTGAACATACATGAAATATCATCTTACGATCGAAATGGATTTGCTCGTGGAGAGAAAATGCAAGCCTTTGAAATTGCAATTTCGGGCTATGGGTTCTTGCAACGATAGATATATGCCAAGAACTAAGCCAAGTTGTAAATGTAAATGCCTGTTATAATAACAAAGTCTGCTGTGTATCTCTTGTTAAAAGCCAAGGTGTCACGCCGGGGATCAATCCTGGTATGGTTGTTTAGTCTATCTGGTTTGTGATCGTCAGCATGGCTACTCAATTTCCAGGCTGCTTAGAACACAAGTCATCTTAGTTATCAGGACCACAGCATCTAACACCATTTCCTTCCTGAAGTTTTTGCCACAAACAGAGCATCTCCTGAGGTCCCTGATAGTGAGCAACCACATAATTATACTTGCAGCCTTCAATATGAATTCTCTCGTCCTTCTCGTAACGAATATCAAGGCCCTCTC

Coding sequence (CDS)

ATGCCCTCTTTACCTCTCAATACAATAAATTTTGAAAAAGTTAATGGTGGCATGCATTTTCTAAATGTTCCTGGTCTGCTATCGAAAACTTCTACCCCCTTCTGGTTCCAGTCAAAGCCATTTAACTTTCCCAGCTTGAAACGTAGACATTGCGATGTGAAGCCGTTGATGATCCAAGCAAGAGGAAACTCTAAAACAGAAAGTGCAAAAGTTAGAAATAGGAGGTTCCAGAAAAAGTATAATGGCAGTTCGACAAAACCAAGGCTTTCAGTATTCTGTTCTGATAAGCAGTTGTATGCAATGCTGGTTGACGACCAGAACAAGAAGTGCCTGTTTTATGGAAGCACCTTACAGAAATCTATGCGTCCAAGTCCCTCATGCACCACCATCGAAGCTGCTCAGCATGTTGGTGAAGAACTTGTGAAGGCATGTGAAGACTTGAACATACATGAAATATCATCTTACGATCGAAATGGATTTGCTCGTGGAGAGAAAATGCAAGCCTTTGAAATTGCAATTTCGGGCTATGGGTTCTTGCAACGATAG

Protein sequence

MPSLPLNTINFEKVNGGMHFLNVPGLLSKTSTPFWFQSKPFNFPSLKRRHCDVKPLMIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISGYGFLQR

Homology

[Close]

BLAST of Cp4.1LG01g12430 vs. ExPASy Swiss-Prot
Match: Q9SX68 (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.5e-12
Identity = 46/142 (32.39%), Postives = 78/142 (54.93%), Query Frame = 0


Query: 39  KPFNFPSLKRRHCDVKPLMIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQL 98
           KP++  SL+ R      ++++A+  + +E    R+ R +KK NG++ +PRL VF S+K L
Sbjct: 32  KPWSSSSLQSR-----SMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHL 91

Query: 99  YAMLVDDQNKKCLFYGSTLQKSMRPS---PSCTTIEAAQHVGEELVKACEDLNIHEISSY 158
           Y  ++DD     L   ST QK +       S  TIE A+ VGE + K+C +  I ++ ++
Sbjct: 92  YVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKV-AF 151

Query: 159 DRNGFARGEKMQAFEIAISGYG 178
           DR G+    +++A   A   +G
Sbjct: 152 DRGGYPYHGRIEALAAAAREHG 167

[Close]

BLAST of Cp4.1LG01g12430 vs. ExPASy Swiss-Prot
Match: P82195 (50S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 PE=1 SV=3)

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-11
Identity = 40/126 (31.75%), Postives = 72/126 (57.14%), Query Frame = 0


Query: 57  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGST 116
           +IQA+ +++ E    R+ R +KK  G+  +PRL VF S+K LY  ++DD     L   ST
Sbjct: 41  LIQAKAHTRREDRTARHVRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAAST 100

Query: 117 LQKSMRPS---PSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAI 176
           +QK++  +    +  T+E AQ +GE + K+C +  I ++ ++DR G+    +++A   A 
Sbjct: 101 MQKAISENIDYSAGPTVEVAQKIGEMIAKSCLEKGITKV-AFDRGGYPYHGRVKALADAA 160

Query: 177 SGYGFL 180
             +G +
Sbjct: 161 REHGLV 165

[Close]

BLAST of Cp4.1LG01g12430 vs. ExPASy Swiss-Prot
Match: Q8SAY0 (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.2e-10
Identity = 45/130 (34.62%), Postives = 71/130 (54.62%), Query Frame = 0


Query: 44  PSLKRRHCDVKPLMIQARGNSKTESAK--VRNRRFQKKYNGSSTKPRLSVFCSDKQLYAM 103
           PS  RR      L++ A+    T  A    R+ R +KK +G++ +PRLSVF S+K LYA 
Sbjct: 33  PSQARRRAS---LVVVAKVKVSTPQADRIARHVRLRKKVSGTTERPRLSVFRSNKHLYAQ 92

Query: 104 LVDDQNKKCLFYGSTLQKSMRPS---PSCTTIEAAQHVGEELVKACEDLNIHEISSYDRN 163
           ++DD     L   ST+ KS+       +  T+E AQ +GE + K+C +  I ++  +DR 
Sbjct: 93  VIDDTKSCTLVSASTMHKSLSKDLEYSAGPTVEVAQKIGEVIAKSCLEKGITKV-VFDRG 152

Query: 164 GFARGEKMQA 169
           GF    +++A
Sbjct: 153 GFLYHGRIKA 158

[Close]

BLAST of Cp4.1LG01g12430 vs. ExPASy Swiss-Prot
Match: P04453 (50S ribosomal protein L18 OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) OX=340047 GN=rplR PE=3 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 7.2e-10
Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 64  SKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRP 123
           +KTE+ K R+ R + K  G++ +PRL+VF S+   YA ++DD     L   STL+  ++ 
Sbjct: 4   TKTEARKRRHFRVRHKVVGTAERPRLNVFKSNTNFYAQIIDDTKGVTLVSASTLKMDLK- 63

Query: 124 SPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAF 170
             S + I+AA+ V EEL K     NI+++  +DRNG+    K++AF
Sbjct: 64  --SKSNIQAAEKVAEELTKKALAANINQV-VFDRNGYLYHGKIKAF 105

[Close]

BLAST of Cp4.1LG01g12430 vs. ExPASy Swiss-Prot
Match: A9FGF8 (50S ribosomal protein L18 OS=Sorangium cellulosum (strain So ce56) OX=448385 GN=rplR PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-09
Identity = 35/90 (38.89%), Postives = 55/90 (61.11%), Query Frame = 0


Query: 72  RNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPS-PSCTTI 131
           R  R +KK  G+  +PRLSVF S K +YA ++DD + K L + STL K ++ S      +
Sbjct: 11  RKLRIRKKVEGTPERPRLSVFRSSKHIYAQVIDDVSGKTLAHASTLSKDLKGSLDEDNKV 70

Query: 132 EAAQHVGEELVKACEDLNIHEISSYDRNGF 161
           EAA+ VG  + + C++  I ++  +DRNG+
Sbjct: 71  EAAKKVGALIARICKERQIDKV-VFDRNGY 99

[Close]

BLAST of Cp4.1LG01g12430 vs. NCBI nr
Match: XP_023547360.1 (uncharacterized protein LOC111806273 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 369 bits (948), Expect = 4.79e-129
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MPSLPLNTINFEKVNGGMHFLNVPGLLSKTSTPFWFQSKPFNFPSLKRRHCDVKPLMIQA 60
           MPSLPLNTINFEKVNGGMHFLNVPGLLSKTSTPFWFQSKPFNFPSLKRRHCDVKPLMIQA
Sbjct: 1   MPSLPLNTINFEKVNGGMHFLNVPGLLSKTSTPFWFQSKPFNFPSLKRRHCDVKPLMIQA 60

Query: 61  RGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120
           RGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS
Sbjct: 61  RGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120

Query: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISGYGFLQ 180
           MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISGYGFLQ
Sbjct: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISGYGFLQ 180

[Close]

BLAST of Cp4.1LG01g12430 vs. NCBI nr
Match: XP_022957246.1 (uncharacterized protein LOC111458689 [Cucurbita moschata] >KAG6601437.1 50S ribosomal protein L18, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 367 bits (943), Expect = 2.77e-128
Identity = 180/181 (99.45%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 1   MPSLPLNTINFEKVNGGMHFLNVPGLLSKTSTPFWFQSKPFNFPSLKRRHCDVKPLMIQA 60
           MPSLPLNTINFEKVNGGMHFLNVPGLLSKT TPFWFQSKPFNFPSLKRRHCDVKPLMIQA
Sbjct: 1   MPSLPLNTINFEKVNGGMHFLNVPGLLSKTPTPFWFQSKPFNFPSLKRRHCDVKPLMIQA 60

Query: 61  RGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120
           RGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS
Sbjct: 61  RGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120

Query: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISGYGFLQ 180
           MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISGYGFLQ
Sbjct: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISGYGFLQ 180

[Close]

BLAST of Cp4.1LG01g12430 vs. NCBI nr
Match: XP_022987454.1 (uncharacterized protein LOC111484997 [Cucurbita maxima])

HSP 1 Score: 364 bits (934), Expect = 6.54e-127
Identity = 179/181 (98.90%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 1   MPSLPLNTINFEKVNGGMHFLNVPGLLSKTSTPFWFQSKPFNFPSLKRRHCDVKPLMIQA 60
           MPSLPLNTINFEKVNGGMHFLNVPGLLSKTSTPFWFQSKPFNFPSLKRRHCDVKPLMIQA
Sbjct: 1   MPSLPLNTINFEKVNGGMHFLNVPGLLSKTSTPFWFQSKPFNFPSLKRRHCDVKPLMIQA 60

Query: 61  RGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120
           RGNSKTESAKVRNRR QKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS
Sbjct: 61  RGNSKTESAKVRNRRLQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120

Query: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISGYGFLQ 180
           MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAIS YGFLQ
Sbjct: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ 180

[Close]

BLAST of Cp4.1LG01g12430 vs. NCBI nr
Match: XP_038891856.1 (50S ribosomal protein L18 isoform X2 [Benincasa hispida])

HSP 1 Score: 322 bits (825), Expect = 2.72e-110
Identity = 161/181 (88.95%), Postives = 167/181 (92.27%), Query Frame = 0


Query: 1   MPSLPLNTINFEKVNGGMHFLNVPGLLSKTSTPFWFQSKPFNFPSLKRRHCDVKPLMIQA 60
           MPSL LNT+N +KV GGM FLN PGLLSKTSTPF  QSKPFNFPSLK R+CDVKPL IQA
Sbjct: 1   MPSLLLNTLNLKKVYGGMAFLNGPGLLSKTSTPFGLQSKPFNFPSLKTRNCDVKPLTIQA 60

Query: 61  RGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120
           RGNSKTESAK+ NRR QKKYNG+ T+PRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS
Sbjct: 61  RGNSKTESAKITNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120

Query: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISGYGFLQ 180
           MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAIS YG LQ
Sbjct: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISRYGLLQ 180

[Close]

BLAST of Cp4.1LG01g12430 vs. NCBI nr
Match: XP_038891854.1 (50S ribosomal protein L18 isoform X1 [Benincasa hispida] >XP_038891855.1 50S ribosomal protein L18 isoform X1 [Benincasa hispida])

HSP 1 Score: 322 bits (825), Expect = 1.35e-109
Identity = 161/181 (88.95%), Postives = 167/181 (92.27%), Query Frame = 0


Query: 1   MPSLPLNTINFEKVNGGMHFLNVPGLLSKTSTPFWFQSKPFNFPSLKRRHCDVKPLMIQA 60
           MPSL LNT+N +KV GGM FLN PGLLSKTSTPF  QSKPFNFPSLK R+CDVKPL IQA
Sbjct: 47  MPSLLLNTLNLKKVYGGMAFLNGPGLLSKTSTPFGLQSKPFNFPSLKTRNCDVKPLTIQA 106

Query: 61  RGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120
           RGNSKTESAK+ NRR QKKYNG+ T+PRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS
Sbjct: 107 RGNSKTESAKITNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 166

Query: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISGYGFLQ 180
           MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAIS YG LQ
Sbjct: 167 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISRYGLLQ 226

[Close]

BLAST of Cp4.1LG01g12430 vs. ExPASy TrEMBL
Match: A0A6J1GYP6 (uncharacterized protein LOC111458689 OS=Cucurbita moschata OX=3662 GN=LOC111458689 PE=4 SV=1)

HSP 1 Score: 367 bits (943), Expect = 1.34e-128
Identity = 180/181 (99.45%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 1   MPSLPLNTINFEKVNGGMHFLNVPGLLSKTSTPFWFQSKPFNFPSLKRRHCDVKPLMIQA 60
           MPSLPLNTINFEKVNGGMHFLNVPGLLSKT TPFWFQSKPFNFPSLKRRHCDVKPLMIQA
Sbjct: 1   MPSLPLNTINFEKVNGGMHFLNVPGLLSKTPTPFWFQSKPFNFPSLKRRHCDVKPLMIQA 60

Query: 61  RGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120
           RGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS
Sbjct: 61  RGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120

Query: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISGYGFLQ 180
           MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISGYGFLQ
Sbjct: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISGYGFLQ 180

[Close]

BLAST of Cp4.1LG01g12430 vs. ExPASy TrEMBL
Match: A0A6J1JIY0 (uncharacterized protein LOC111484997 OS=Cucurbita maxima OX=3661 GN=LOC111484997 PE=4 SV=1)

HSP 1 Score: 364 bits (934), Expect = 3.16e-127
Identity = 179/181 (98.90%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 1   MPSLPLNTINFEKVNGGMHFLNVPGLLSKTSTPFWFQSKPFNFPSLKRRHCDVKPLMIQA 60
           MPSLPLNTINFEKVNGGMHFLNVPGLLSKTSTPFWFQSKPFNFPSLKRRHCDVKPLMIQA
Sbjct: 1   MPSLPLNTINFEKVNGGMHFLNVPGLLSKTSTPFWFQSKPFNFPSLKRRHCDVKPLMIQA 60

Query: 61  RGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120
           RGNSKTESAKVRNRR QKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS
Sbjct: 61  RGNSKTESAKVRNRRLQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120

Query: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISGYGFLQ 180
           MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAIS YGFLQ
Sbjct: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ 180

[Close]

BLAST of Cp4.1LG01g12430 vs. ExPASy TrEMBL
Match: A0A6J1DC55 (uncharacterized protein LOC111019142 OS=Momordica charantia OX=3673 GN=LOC111019142 PE=4 SV=1)

HSP 1 Score: 308 bits (790), Expect = 2.85e-105
Identity = 151/181 (83.43%), Postives = 167/181 (92.27%), Query Frame = 0


Query: 1   MPSLPLNTINFEKVNGGMHFLNVPGLLSKTSTPFWFQSKPFNFPSLKRRHCDVKPLMIQA 60
           MP   LNT++F+KV GGM  +N+PGLLSK+STPF FQSKPFNFPSLK ++CD+KPL+IQA
Sbjct: 1   MPLSLLNTLDFQKVYGGMPLVNLPGLLSKSSTPFGFQSKPFNFPSLKSKNCDLKPLIIQA 60

Query: 61  RGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120
           RG+SK ESAK+RNRR QKKYNG+  +PRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS
Sbjct: 61  RGHSKPESAKIRNRRMQKKYNGTPKRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120

Query: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISGYGFLQ 180
           MRP+PSCTTIEAAQ+VGEELVK CEDLNIHEISSYDRNGFARGEKMQAFEIAIS YGFLQ
Sbjct: 121 MRPNPSCTTIEAAQYVGEELVKTCEDLNIHEISSYDRNGFARGEKMQAFEIAISHYGFLQ 180

[Close]

BLAST of Cp4.1LG01g12430 vs. ExPASy TrEMBL
Match: A0A1S3BEE0 (50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103489126 PE=4 SV=1)

HSP 1 Score: 303 bits (776), Expect = 3.88e-103
Identity = 154/181 (85.08%), Postives = 162/181 (89.50%), Query Frame = 0


Query: 1   MPSLPLNTINFEKVNGGMHFLNVPGLLSKTSTPFWFQSKPFNFPSLKRRHCDVKPLMIQA 60
           M SL LNT NF+KV+GG+ F NV GLL KTS PF  QSK F+F SLK +HCDVKPLMIQA
Sbjct: 1   MSSLLLNTSNFKKVHGGVAFQNVSGLLLKTSMPFGLQSKSFDFRSLKTKHCDVKPLMIQA 60

Query: 61  RGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120
           RGNSKTESAKVRNRR QKKYNG+ T+PRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS
Sbjct: 61  RGNSKTESAKVRNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120

Query: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISGYGFLQ 180
           MRP+ SCTTIEAAQHVGEELVK C DLNIHEISSYDRNGFARGEKMQAFEIAIS YGFLQ
Sbjct: 121 MRPTLSCTTIEAAQHVGEELVKVCGDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ 180

[Close]

BLAST of Cp4.1LG01g12430 vs. ExPASy TrEMBL
Match: A0A5D3D244 (50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00380 PE=4 SV=1)

HSP 1 Score: 303 bits (776), Expect = 3.88e-103
Identity = 154/181 (85.08%), Postives = 162/181 (89.50%), Query Frame = 0


Query: 1   MPSLPLNTINFEKVNGGMHFLNVPGLLSKTSTPFWFQSKPFNFPSLKRRHCDVKPLMIQA 60
           M SL LNT NF+KV+GG+ F NV GLL KTS PF  QSK F+F SLK +HCDVKPLMIQA
Sbjct: 1   MSSLLLNTSNFKKVHGGVAFQNVSGLLLKTSMPFGLQSKSFDFRSLKTKHCDVKPLMIQA 60

Query: 61  RGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120
           RGNSKTESAKVRNRR QKKYNG+ T+PRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS
Sbjct: 61  RGNSKTESAKVRNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120

Query: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISGYGFLQ 180
           MRP+ SCTTIEAAQHVGEELVK C DLNIHEISSYDRNGFARGEKMQAFEIAIS YGFLQ
Sbjct: 121 MRPTLSCTTIEAAQHVGEELVKVCGDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ 180

[Close]

BLAST of Cp4.1LG01g12430 vs. TAIR 10
Match: AT1G14205.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 188.0 bits (476), Expect = 6.9e-48
Identity = 97/142 (68.31%), Postives = 112/142 (78.87%), Query Frame = 0


Query: 39  KPF-NFPSLKRRHCDVKPLMIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQ 98
           KP+  FP        VKP +I+ARGN++ ES K RNRR +KK+ G+ TKPRLSVFCSDKQ
Sbjct: 23  KPYPQFPIRITTMSVVKPFVIEARGNTRVESPKTRNRRSRKKFTGTQTKPRLSVFCSDKQ 82

Query: 99  LYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDR 158
           LYAMLVDD NKKCLFY STLQKS+R  P CT IEAA+ VGEEL+KA  DL I+EISSYDR
Sbjct: 83  LYAMLVDDFNKKCLFYASTLQKSIRGDPPCTVIEAAKRVGEELIKASIDLKINEISSYDR 142

Query: 159 NGFARGEKMQAFEIAISGYGFL 180
           NG  RGE+MQAFEIAI+ +GFL
Sbjct: 143 NGNKRGERMQAFEIAIAQHGFL 164

[Close]

BLAST of Cp4.1LG01g12430 vs. TAIR 10
Match: AT1G48350.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 73.2 bits (178), Expect = 2.5e-13
Identity = 46/142 (32.39%), Postives = 78/142 (54.93%), Query Frame = 0


Query: 39  KPFNFPSLKRRHCDVKPLMIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQL 98
           KP++  SL+ R      ++++A+  + +E    R+ R +KK NG++ +PRL VF S+K L
Sbjct: 32  KPWSSSSLQSR-----SMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHL 91

Query: 99  YAMLVDDQNKKCLFYGSTLQKSMRPS---PSCTTIEAAQHVGEELVKACEDLNIHEISSY 158
           Y  ++DD     L   ST QK +       S  TIE A+ VGE + K+C +  I ++ ++
Sbjct: 92  YVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKV-AF 151

Query: 159 DRNGFARGEKMQAFEIAISGYG 178
           DR G+    +++A   A   +G
Sbjct: 152 DRGGYPYHGRIEALAAAAREHG 167

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g12430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SX68	3.5e-12	32.39	50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
P82195	1.0e-11	31.75	50S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 P...	[more]
Q8SAY0	4.2e-10	34.62	50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=3994...	[more]
P04453	7.2e-10	37.74	50S ribosomal protein L18 OS=Mycoplasma capricolum subsp. capricolum (strain Cal...	[more]
A9FGF8	1.6e-09	38.89	50S ribosomal protein L18 OS=Sorangium cellulosum (strain So ce56) OX=448385 GN=...	[more]

BLAST of Cp4.1LG01g12430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023547360.1	4.79e-129	100.00	uncharacterized protein LOC111806273 [Cucurbita pepo subsp. pepo]	[more]
XP_022957246.1	2.77e-128	99.45	uncharacterized protein LOC111458689 [Cucurbita moschata] >KAG6601437.1 50S ribo...	[more]
XP_022987454.1	6.54e-127	98.90	uncharacterized protein LOC111484997 [Cucurbita maxima]	[more]
XP_038891856.1	2.72e-110	88.95	50S ribosomal protein L18 isoform X2 [Benincasa hispida]	[more]
XP_038891854.1	1.35e-109	88.95	50S ribosomal protein L18 isoform X1 [Benincasa hispida] >XP_038891855.1 50S rib...	[more]

BLAST of Cp4.1LG01g12430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GYP6	1.34e-128	99.45	uncharacterized protein LOC111458689 OS=Cucurbita moschata OX=3662 GN=LOC1114586...	[more]
A0A6J1JIY0	3.16e-127	98.90	uncharacterized protein LOC111484997 OS=Cucurbita maxima OX=3661 GN=LOC111484997...	[more]
A0A6J1DC55	2.85e-105	83.43	uncharacterized protein LOC111019142 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A1S3BEE0	3.88e-103	85.08	50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103489126 PE=4 SV=1	[more]
A0A5D3D244	3.88e-103	85.08	50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of Cp4.1LG01g12430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14205.1	6.9e-48	68.31	Ribosomal L18p/L5e family protein	[more]
AT1G48350.1	2.5e-13	32.39	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 64..169 e-value: 4.2E-16 score: 59.3
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 28..181
None	No IPR available	GENE3D	3.30.420.100		coord: 64..178 e-value: 1.5E-21 score: 78.9
None	No IPR available	PANTHER	PTHR12899:SF8	RIBOSOMAL L18P/L5E FAMILY PROTEIN	coord: 28..181
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 77..172 e-value: 2.61061E-22 score: 84.1287
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 65..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g12430.1	Cp4.1LG01g12430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome