Cp4.1LG01g12330 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g12330
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	GCK domain-containing protein
Location	Cp4.1LG01: 8842002 .. 8842538 (+)
RNA-Seq Expression	Cp4.1LG01g12330
Synteny	Cp4.1LG01g12330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAACTTCGGAATCGAAACTCCAAGACGCAGAATCGAACGCCGCCGCCGCCACTAAAACACCGGAAGATCAACAACAATTGGGCGCCCCAAATCACTCTGAGGAAAAATCGCCCGAGGAATCAGGTCAATCAGGAAAGATTTCCGGAAGTGGAGGTGAAGATGAAGGAGGAGAGGATCTAGACGAGGAAGAGGAGGGGGAGTGTGGGTTTTGCTTGTTTATGAAAGGGGGTGGTTGCAGAGATAGCTTCGTAGAATGGGAGAAATGCATTGAGGAGGCGGAGAAGAACAAGGAGGATATTGTGGAGAAGTGTTTTGAAGTCACTGGGGCTTTGAAGAAATGTATGGAGGCTCATGCGGATTATTACGAGCCGATTCTGAAGGCGGAGAAAATGGCAGAAAACGAGGCGATTATCGAATTGGAGAAGGAATCAACTCCAAATGCTACCCAGCAACATACGGATTCCATAGACCTGGAGGTGATTGCAGGTACCGAGAATTTGGAAGAACAGAAGGCCTCTGCTGCTGGTAAGTGA

mRNA sequence

ATGTCAACTTCGGAATCGAAACTCCAAGACGCAGAATCGAACGCCGCCGCCGCCACTAAAACACCGGAAGATCAACAACAATTGGGCGCCCCAAATCACTCTGAGGAAAAATCGCCCGAGGAATCAGGTCAATCAGGAAAGATTTCCGGAAGTGGAGGTGAAGATGAAGGAGGAGAGGATCTAGACGAGGAAGAGGAGGGGGAGTGTGGGTTTTGCTTGTTTATGAAAGGGGGTGGTTGCAGAGATAGCTTCGTAGAATGGGAGAAATGCATTGAGGAGGCGGAGAAGAACAAGGAGGATATTGTGGAGAAGTGTTTTGAAGTCACTGGGGCTTTGAAGAAATGTATGGAGGCTCATGCGGATTATTACGAGCCGATTCTGAAGGCGGAGAAAATGGCAGAAAACGAGGCGATTATCGAATTGGAGAAGGAATCAACTCCAAATGCTACCCAGCAACATACGGATTCCATAGACCTGGAGGTGATTGCAGGTACCGAGAATTTGGAAGAACAGAAGGCCTCTGCTGCTGGTAAGTGA

Coding sequence (CDS)

ATGTCAACTTCGGAATCGAAACTCCAAGACGCAGAATCGAACGCCGCCGCCGCCACTAAAACACCGGAAGATCAACAACAATTGGGCGCCCCAAATCACTCTGAGGAAAAATCGCCCGAGGAATCAGGTCAATCAGGAAAGATTTCCGGAAGTGGAGGTGAAGATGAAGGAGGAGAGGATCTAGACGAGGAAGAGGAGGGGGAGTGTGGGTTTTGCTTGTTTATGAAAGGGGGTGGTTGCAGAGATAGCTTCGTAGAATGGGAGAAATGCATTGAGGAGGCGGAGAAGAACAAGGAGGATATTGTGGAGAAGTGTTTTGAAGTCACTGGGGCTTTGAAGAAATGTATGGAGGCTCATGCGGATTATTACGAGCCGATTCTGAAGGCGGAGAAAATGGCAGAAAACGAGGCGATTATCGAATTGGAGAAGGAATCAACTCCAAATGCTACCCAGCAACATACGGATTCCATAGACCTGGAGGTGATTGCAGGTACCGAGAATTTGGAAGAACAGAAGGCCTCTGCTGCTGGTAAGTGA

Protein sequence

MSTSESKLQDAESNAAAATKTPEDQQQLGAPNHSEEKSPEESGQSGKISGSGGEDEGGEDLDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHADYYEPILKAEKMAENEAIIELEKESTPNATQQHTDSIDLEVIAGTENLEEQKASAAGK

Homology

[Close]

BLAST of Cp4.1LG01g12330 vs. NCBI nr
Match: XP_023536143.1 (uncharacterized protein LOC111797387 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 332 bits (851), Expect = 2.44e-114
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MSTSESKLQDAESNAAAATKTPEDQQQLGAPNHSEEKSPEESGQSGKISGSGGEDEGGED 60
           MSTSESKLQDAESNAAAATKTPEDQQQLGAPNHSEEKSPEESGQSGKISGSGGEDEGGED
Sbjct: 1   MSTSESKLQDAESNAAAATKTPEDQQQLGAPNHSEEKSPEESGQSGKISGSGGEDEGGED 60

Query: 61  LDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHA 120
           LDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHA
Sbjct: 61  LDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHA 120

Query: 121 DYYEPILKAEKMAENEAIIELEKESTPNATQQHTDSIDLEVIAGTENLEEQKASAA 176
           DYYEPILKAEKMAENEAIIELEKESTPNATQQHTDSIDLEVIAGTENLEEQKASAA
Sbjct: 121 DYYEPILKAEKMAENEAIIELEKESTPNATQQHTDSIDLEVIAGTENLEEQKASAA 176

[Close]

BLAST of Cp4.1LG01g12330 vs. NCBI nr
Match: KAG7032232.1 (hypothetical protein SDJN02_06275, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 324 bits (831), Expect = 2.64e-111
Identity = 172/178 (96.63%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 1   MSTSESKLQDAESNAAAATKTPEDQQQLGAPNHSEEKSPEESGQSGKISGSGGEDEGGED 60
           MSTS SK QDAESNAAAA K+PEDQQQLGAPNHSEEKSPEESGQSGKIS SGGEDEGGED
Sbjct: 1   MSTSGSKRQDAESNAAAAAKSPEDQQQLGAPNHSEEKSPEESGQSGKISESGGEDEGGED 60

Query: 61  LDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHA 120
           LDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFE+TGALKKCMEAHA
Sbjct: 61  LDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEITGALKKCMEAHA 120

Query: 121 DYYEPILKAEKMAENEAIIELEKESTPNATQQHTDSIDLEVIAGTENLEEQKASAAGK 178
           DYYEPILKAEKMAENEAIIELEKESTPNATQQHTDSIDLEVIAGTENLEEQKASAAGK
Sbjct: 121 DYYEPILKAEKMAENEAIIELEKESTPNATQQHTDSIDLEVIAGTENLEEQKASAAGK 178

[Close]

BLAST of Cp4.1LG01g12330 vs. NCBI nr
Match: KAG6601449.1 (hypothetical protein SDJN03_06682, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 320 bits (820), Expect = 1.30e-109
Identity = 170/176 (96.59%), Postives = 172/176 (97.73%), Query Frame = 0


Query: 1   MSTSESKLQDAESNAAAATKTPEDQQQLGAPNHSEEKSPEESGQSGKISGSGGEDEGGED 60
           MSTS SK QDAESNAAAA K+PEDQQQLGAPNHSEEKSPEESGQSGKIS SGGEDEGGED
Sbjct: 1   MSTSGSKRQDAESNAAAAAKSPEDQQQLGAPNHSEEKSPEESGQSGKISESGGEDEGGED 60

Query: 61  LDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHA 120
           LDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFE+TGALKKCMEAHA
Sbjct: 61  LDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEITGALKKCMEAHA 120

Query: 121 DYYEPILKAEKMAENEAIIELEKESTPNATQQHTDSIDLEVIAGTENLEEQKASAA 176
           DYYEPILKAEKMAENEAIIELEKESTPNATQQHTDSIDLEVIAGTENLEEQKASAA
Sbjct: 121 DYYEPILKAEKMAENEAIIELEKESTPNATQQHTDSIDLEVIAGTENLEEQKASAA 176

[Close]

BLAST of Cp4.1LG01g12330 vs. NCBI nr
Match: XP_022997117.1 (uncharacterized protein LOC111492108 [Cucurbita maxima])

HSP 1 Score: 314 bits (804), Expect = 3.70e-107
Identity = 170/177 (96.05%), Postives = 172/177 (97.18%), Query Frame = 0


Query: 1   MSTSESKLQDAESNAAAAT-KTPEDQQQLGAPNHSEEKSPEESGQSGKISGSGGEDEGGE 60
           MSTSESKLQDAESNAAAA  KTPEDQQQLGAPNHSEEKSP+ES QSGKIS SGGEDEGGE
Sbjct: 1   MSTSESKLQDAESNAAAAAAKTPEDQQQLGAPNHSEEKSPQESVQSGKISESGGEDEGGE 60

Query: 61  DLDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAH 120
           DLDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAH
Sbjct: 61  DLDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAH 120

Query: 121 ADYYEPILKAEKMAENEAIIELEKESTPNATQQHTDSIDLEVIAGTENLEEQKASAA 176
           ADYYEPILKAEKMAENEAIIELEKESTPNATQQHTDS DLEVI+GTENLEEQKASAA
Sbjct: 121 ADYYEPILKAEKMAENEAIIELEKESTPNATQQHTDSKDLEVISGTENLEEQKASAA 177

[Close]

BLAST of Cp4.1LG01g12330 vs. NCBI nr
Match: XP_022957551.1 (transcription elongation factor spt5 [Cucurbita moschata] >XP_022957552.1 transcription elongation factor spt5 [Cucurbita moschata])

HSP 1 Score: 272 bits (695), Expect = 5.99e-91
Identity = 146/153 (95.42%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1   MSTSESKLQDAESNAAAAT---KTPEDQQQLGAPNHSEEKSPEESGQSGKISGSGGEDEG 60
           MSTSESKLQDAESNAAAA    KTPEDQQQLGAPNHSEEKSPEESGQSGKIS SGGEDEG
Sbjct: 1   MSTSESKLQDAESNAAAAAAAAKTPEDQQQLGAPNHSEEKSPEESGQSGKISESGGEDEG 60

Query: 61  GEDLDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEVTGALKKCME 120
           GEDLDEEEE ECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFE+TGALKKCME
Sbjct: 61  GEDLDEEEEEECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEITGALKKCME 120

Query: 121 AHADYYEPILKAEKMAENEAIIELEKESTPNAT 150
           AHADYYEPILKAEKMAENEAIIELEKESTPNAT
Sbjct: 121 AHADYYEPILKAEKMAENEAIIELEKESTPNAT 153

[Close]

BLAST of Cp4.1LG01g12330 vs. ExPASy TrEMBL
Match: A0A6J1K434 (uncharacterized protein LOC111492108 OS=Cucurbita maxima OX=3661 GN=LOC111492108 PE=4 SV=1)

HSP 1 Score: 314 bits (804), Expect = 1.79e-107
Identity = 170/177 (96.05%), Postives = 172/177 (97.18%), Query Frame = 0


Query: 1   MSTSESKLQDAESNAAAAT-KTPEDQQQLGAPNHSEEKSPEESGQSGKISGSGGEDEGGE 60
           MSTSESKLQDAESNAAAA  KTPEDQQQLGAPNHSEEKSP+ES QSGKIS SGGEDEGGE
Sbjct: 1   MSTSESKLQDAESNAAAAAAKTPEDQQQLGAPNHSEEKSPQESVQSGKISESGGEDEGGE 60

Query: 61  DLDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAH 120
           DLDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAH
Sbjct: 61  DLDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAH 120

Query: 121 ADYYEPILKAEKMAENEAIIELEKESTPNATQQHTDSIDLEVIAGTENLEEQKASAA 176
           ADYYEPILKAEKMAENEAIIELEKESTPNATQQHTDS DLEVI+GTENLEEQKASAA
Sbjct: 121 ADYYEPILKAEKMAENEAIIELEKESTPNATQQHTDSKDLEVISGTENLEEQKASAA 177

[Close]

BLAST of Cp4.1LG01g12330 vs. ExPASy TrEMBL
Match: A0A6J1GZI9 (transcription elongation factor spt5 OS=Cucurbita moschata OX=3662 GN=LOC111458916 PE=4 SV=1)

HSP 1 Score: 272 bits (695), Expect = 2.90e-91
Identity = 146/153 (95.42%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1   MSTSESKLQDAESNAAAAT---KTPEDQQQLGAPNHSEEKSPEESGQSGKISGSGGEDEG 60
           MSTSESKLQDAESNAAAA    KTPEDQQQLGAPNHSEEKSPEESGQSGKIS SGGEDEG
Sbjct: 1   MSTSESKLQDAESNAAAAAAAAKTPEDQQQLGAPNHSEEKSPEESGQSGKISESGGEDEG 60

Query: 61  GEDLDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEVTGALKKCME 120
           GEDLDEEEE ECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFE+TGALKKCME
Sbjct: 61  GEDLDEEEEEECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEITGALKKCME 120

Query: 121 AHADYYEPILKAEKMAENEAIIELEKESTPNAT 150
           AHADYYEPILKAEKMAENEAIIELEKESTPNAT
Sbjct: 121 AHADYYEPILKAEKMAENEAIIELEKESTPNAT 153

[Close]

BLAST of Cp4.1LG01g12330 vs. ExPASy TrEMBL
Match: A0A0A0KU46 (GCK domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G606380 PE=4 SV=1)

HSP 1 Score: 246 bits (628), Expect = 7.00e-81
Identity = 139/178 (78.09%), Postives = 148/178 (83.15%), Query Frame = 0


Query: 1   MSTSESKLQDAESNAAAATKTPEDQQQLGAPNHSEEKSPEESGQSGKISGSGGEDEGGED 60
           MSTSESKLQDAESNAAA TKT EDQ Q   PN+SEEKS EE+  SGKIS SGG DEGGED
Sbjct: 1   MSTSESKLQDAESNAAA-TKTLEDQPQSDTPNYSEEKSSEEASLSGKISESGGGDEGGED 60

Query: 61  LDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHA 120
           ++EEEEGECGFCLFMKGGGCRDSF+ WEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAH 
Sbjct: 61  IEEEEEGECGFCLFMKGGGCRDSFIAWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHP 120

Query: 121 DYYEPILKAEKMAENEAIIELEKESTPNATQQHTDSIDLEVIAGTENLEEQKASAAGK 178
           DYYEPILKAEKMAE EAIIELEKE+TP+A+QQ T            N +EQKAS  GK
Sbjct: 121 DYYEPILKAEKMAEEEAIIELEKETTPSASQQDT------------NSDEQKASVGGK 165

[Close]

BLAST of Cp4.1LG01g12330 vs. ExPASy TrEMBL
Match: A0A6J1G1F8 (uncharacterized protein LOC111449816 OS=Cucurbita moschata OX=3662 GN=LOC111449816 PE=4 SV=1)

HSP 1 Score: 232 bits (592), Expect = 2.26e-75
Identity = 138/178 (77.53%), Postives = 144/178 (80.90%), Query Frame = 0


Query: 1   MSTSESKLQDAESNAAAATKTPEDQQQLGAPNHSEEKSPEESGQSGKISGSGGEDEGGED 60
           MSTS SKLQDAESNAAA TKT ED+QQ G+P   EEKS  ES QSGKI  SGGED     
Sbjct: 1   MSTSNSKLQDAESNAAA-TKTLEDEQQSGSPIPPEEKSSGESDQSGKIPESGGEDP---- 60

Query: 61  LDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHA 120
            +EEEEGECGFCLFMKGGGC+DSFVEWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHA
Sbjct: 61  -EEEEEGECGFCLFMKGGGCKDSFVEWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHA 120

Query: 121 DYYEPILKAEKMAENEAIIELEKESTPNATQQHTDSIDLEVIAGTENLEEQKASAAGK 178
           DYYEPILKAEKMAE EAIIELEKE TP+A      S  LEV  G+ N EEQKASA  K
Sbjct: 121 DYYEPILKAEKMAEEEAIIELEKEMTPDAN-----SNVLEVNEGSNNSEEQKASAGSK 167

[Close]

BLAST of Cp4.1LG01g12330 vs. ExPASy TrEMBL
Match: A0A5A7SVC8 (Transcription elongation factor spt5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00170 PE=4 SV=1)

HSP 1 Score: 233 bits (593), Expect = 3.10e-75
Identity = 135/182 (74.18%), Postives = 147/182 (80.77%), Query Frame = 0


Query: 1   MSTSESKLQDAESNAAAATKTPEDQQQLGAPNHSEEKSPEESGQSGKISGSGGEDEGGED 60
           MSTSESKLQDAESNAAA+ KT EDQ Q  + +HS+EKS EE+  SGKIS SGG DEGGED
Sbjct: 19  MSTSESKLQDAESNAAAS-KTLEDQPQSDSASHSDEKSSEEASLSGKISESGGGDEGGED 78

Query: 61  LDEEEE----GECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEVTGALKKCM 120
           ++EEEE    GECGFCLFMKGGGCRDSF+ WEKCIEEAEKNKEDIVEKCFEVTGALKKCM
Sbjct: 79  IEEEEEEEEEGECGFCLFMKGGGCRDSFIAWEKCIEEAEKNKEDIVEKCFEVTGALKKCM 138

Query: 121 EAHADYYEPILKAEKMAENEAIIELEKESTPNATQQHTDSIDLEVIAGTENLEEQKASAA 178
           EAH DYYEPILKAEKMAE EAIIELEKE  P+A+Q+ T            N +EQKASA 
Sbjct: 139 EAHPDYYEPILKAEKMAEEEAIIELEKEIAPSASQEDT------------NSDEQKASAG 187

[Close]

BLAST of Cp4.1LG01g12330 vs. TAIR 10
Match: AT1G14060.1 (GCK domain-containing protein )

HSP 1 Score: 129.8 bits (325), Expect = 2.2e-30
Identity = 76/143 (53.15%), Postives = 93/143 (65.03%), Query Frame = 0


Query: 2   STSESKLQDAESNAAAATKTPEDQQQLGAPNHSEEKSPEESGQSGKISGSGGEDEGGEDL 61
           +  E+    +E    A+  TP   ++LG  + +  + PE+S    K      E+ GG D 
Sbjct: 21  NNEEAPPAKSEKLGDASPSTPAPSEELG-DSSTVWRDPEDSESDEK-----PEEGGGGDA 80

Query: 62  DEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHAD 121
           D EEEGECGFCLFMKGGGC+DSFV WE+C+E AEKNKEDIV  C EVT  LKKCM+ H+D
Sbjct: 81  DGEEEGECGFCLFMKGGGCKDSFVAWEECVEAAEKNKEDIVTNCMEVTSMLKKCMDEHSD 140

Query: 122 YYEPILKAEKMAENEAIIELEKE 145
           YY+PIL AEK AE E   ELE E
Sbjct: 141 YYQPILAAEKAAEAEVKKELEAE 157

[Close]

BLAST of Cp4.1LG01g12330 vs. TAIR 10
Match: AT5G57640.1 (GCK domain-containing protein )

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-13
Identity = 53/131 (40.46%), Postives = 68/131 (51.91%), Query Frame = 0


Query: 23  EDQQQLGAPNHSEEKSPEESGQSGKISGSGGEDEG---GEDLD--EEEEGECGFCLFMKG 82
           EDQ+ +       E   +       I   G E+E     EDLD  EEE GEC  C F+KG
Sbjct: 33  EDQRDVEESKTLSEDQVDVKESKTLIEDQGDEEESKTLDEDLDETEEESGECPLCQFIKG 92

Query: 83  GGCRDSFVEWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHADYYEPILKAEKMAENEA 142
           G C+++F E E C +EA+KN ED V KC E     K CM  +  YYEP+L  E  A  + 
Sbjct: 93  GECKEAFTELENCCDEAKKNNEDHVSKCKEARLIFKTCMYDNPVYYEPLLAGEARAMAKM 152

Query: 143 IIEL---EKES 146
           + EL   EKE+
Sbjct: 153 LSELLNAEKEA 163

[Close]

BLAST of Cp4.1LG01g12330 vs. TAIR 10
Match: AT5G02210.1 (GCK domain-containing protein )

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-13
Identity = 43/90 (47.78%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 59  EDLDEEEEGECGFCLFMKGGGCRDSFVEW-EKC---IEEAEKNKEDIVEKCFEVTGALKK 118
           ++++EEE+ +  F  FMKGGGC++SF  W + C    EEAEKNK D+V KC  + G   K
Sbjct: 70  DEINEEEDQK--FVEFMKGGGCKESFTAWNDDCNFTEEEAEKNK-DLVTKCAGLFGTFSK 129

Query: 119 CMEAHADYYEPILKAEKMAENEAIIELEKE 145
           CM+ H+DYY PIL  +K  E      LEKE
Sbjct: 130 CMDTHSDYYHPILAVKKTTEE----HLEKE 152

[Close]

BLAST of Cp4.1LG01g12330 vs. TAIR 10
Match: AT5G57570.1 (GCK domain-containing protein )

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-12
Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 53  GEDEGGEDLDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKN-KEDIVEKCFEVTGA 112
           GE +G    +EEE GEC  C F+KGG C++SF+  E+C++EAE++ +E    KC EV   
Sbjct: 41  GEGKG----EEEESGECRLCRFIKGGECKESFIALEQCVDEAEESGEESDFTKCKEVRAK 100

Query: 113 LKKCMEAHADYYEPILKAEKMA 134
            K CM  +  YYEPIL  E  A
Sbjct: 101 FKTCMYENPVYYEPILAGEARA 118

[Close]

BLAST of Cp4.1LG01g12330 vs. TAIR 10
Match: AT1G14048.1 (GCK domain-containing protein )

HSP 1 Score: 48.5 bits (114), Expect = 6.4e-06
Identity = 32/91 (35.16%), Postives = 44/91 (48.35%), Query Frame = 0


Query: 53  GEDEGGEDLDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEVTGAL 112
           GE     ++ EEEE    F  FM+GGGC++ F +WE C +EA             V   +
Sbjct: 14  GESVSPNEVREEEEKGEVFSAFMRGGGCKEPFTDWEDCTDEATN---------VGVFAMM 73

Query: 113 KKCME-AHADYYEPILKAEKMAENEAIIELE 143
            KCM     D+Y P L A+K A+     EL+
Sbjct: 74  TKCMVWMLTDHYRPFLAAKKTAQEHIEKELQ 95

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g12330 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g12330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023536143.1	2.44e-114	100.00	uncharacterized protein LOC111797387 [Cucurbita pepo subsp. pepo]	[more]
KAG7032232.1	2.64e-111	96.63	hypothetical protein SDJN02_06275, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6601449.1	1.30e-109	96.59	hypothetical protein SDJN03_06682, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022997117.1	3.70e-107	96.05	uncharacterized protein LOC111492108 [Cucurbita maxima]	[more]
XP_022957551.1	5.99e-91	95.42	transcription elongation factor spt5 [Cucurbita moschata] >XP_022957552.1 transc...	[more]

BLAST of Cp4.1LG01g12330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K434	1.79e-107	96.05	uncharacterized protein LOC111492108 OS=Cucurbita maxima OX=3661 GN=LOC111492108...	[more]
A0A6J1GZI9	2.90e-91	95.42	transcription elongation factor spt5 OS=Cucurbita moschata OX=3662 GN=LOC1114589...	[more]
A0A0A0KU46	7.00e-81	78.09	GCK domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G606380 PE=4 SV...	[more]
A0A6J1G1F8	2.26e-75	77.53	uncharacterized protein LOC111449816 OS=Cucurbita moschata OX=3662 GN=LOC1114498...	[more]
A0A5A7SVC8	3.10e-75	74.18	Transcription elongation factor spt5-like OS=Cucumis melo var. makuwa OX=1194695...	[more]

BLAST of Cp4.1LG01g12330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14060.1	2.2e-30	53.15	GCK domain-containing protein	[more]
AT5G57640.1	1.4e-13	40.46	GCK domain-containing protein	[more]
AT5G02210.1	2.4e-13	47.78	GCK domain-containing protein	[more]
AT5G57570.1	1.2e-12	46.34	GCK domain-containing protein	[more]
AT1G14048.1	6.4e-06	35.16	GCK domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 84..104
None	No IPR available	COILS	Coil	Coil	coord: 1..21
None	No IPR available	SMART	SM01227	GCK_2	coord: 67..141 e-value: 1.1E-38 score: 144.5
None	No IPR available	GENE3D	1.10.287.2900		coord: 50..127 e-value: 2.3E-7 score: 32.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66
None	No IPR available	PANTHER	PTHR34357:SF2	F7A19.14 PROTEIN-RELATED	coord: 3..155
None	No IPR available	PANTHER	PTHR34357	F7A19.14 PROTEIN-RELATED	coord: 3..155
IPR012891	GCK	PFAM	PF07802	GCK	coord: 67..137 e-value: 2.5E-35 score: 120.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g12330.1	Cp4.1LG01g12330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006414	translational elongation
molecular_function	GO:0003746	translation elongation factor activity