Cp4.1LG01g11930 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g11930
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Fcf2 domain-containing protein
Location	Cp4.1LG01: 5801508 .. 5803931 (+)
RNA-Seq Expression	Cp4.1LG01g11930
Synteny	Cp4.1LG01g11930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAACCTTCGCGCGTCCGATTTGGATTGAGAAAAATAAGGGTTTTCGCGCGTCCGATTTTGTCCCAAACCCTCACGATCTCACTCTCTCACACTCTCACACTCTCACACTCTCACATTCTCTTCCCTCTCTGCCAATCTTCCTCAATCTCACAATCTTGCGCTGCGTAAGACGGATTAAGCCGTGGGTTTGTTCGCTTGGAGGTCGTTTTGGTGGCGTTGCCGTGTTGCGGTCGTGTTAGCGGCCGTCCACCGTTCGCAGTGGAAGTTGTGCGTAGCAGAATTTAGGGAAAATAAAAATCTGATCGCCCATAAAACGAAAACCCAACCTGACCAGGAACTGATTGATTTTGTTTTTCCTTTTTAAATTTGTCGTAGATGTCAGAAATAAAGCCTATCATTGGCCTCTCTTGGGAGCCAAACCTACCAACCTCCTCATTGGGGATCAAAACTAAGGCTTGTGACAATTCTCACAGTCAAGCAGAAAATAGCCTTGTTTGGAAAATCAACTCAGAGCTTGTAGATGGGCTGTTTGTTCCACCAAACAACCCAAAAAAGTTGAATAATTTACTGAGAAAGCAAGTCAGTGACACGGCTGGGAGGAGCTGGTATATGCTCTTTTCCTGAAATTTCAGCAGTTTTACTATTGATACTTGAAAGAAACATGGATCCAATTTCATTCGAATGCTGATTAATATGATTTTTAAAATCATTGGTTCTGCCTTGCTAGATACTATCGGCTTACTAAACATAGTAGTTGACGTTCTAAATTCTGGTACTTATACGCTTATTATTGTAACTAGGTTTGACATGGCAGCACAAACCATGACCCCTGAAGTGGAAGAAGACTTGCGCTTGTTGAAGGTGAGACTGTATCCGACGTTTTATCTATTTTACTCTTATCAGTTTTCTATTCCACATATAGCAAGCTGGTAACTTTGATCATGTATCAAGAATTGAAATCATGCTAAAGAGCTCTGCAGTTGCGAGATGGGTATATCATGTGTGCGTTCTATAAATATTTGGGTTCCAAACCTTCAAGAATCAATGTTCTTCTAGAGCTATGACAATGAATATATATATGATTGCTATGATGCATGTAACGACCAATTAGAATGTCATGTTTCTACATATTTGATTTGTTAGGATCGTGTAGAGAAATAATAGTACATTTTGATGCCACATGAAACACATATTCCAGTGCACAGTTCATTAGTTCTTGAAACTATACCACGTTGAACCTTTGCATTGTGGTTCTTGAAGCTATACCATGTTGAACTTTTGCATTGTGGGACTCTTAAACCTGATATTGGACATTGGAGTGCGTATATTTGACTTATGCATCTATTCCCTCTGAAAAGATCTGTTTGATTGACTTATGCATCTCAATTTCTCTTGATGATTATAGCTGAGGAGTGTCATTGATCCAAAGAGACACTACAAGAAGGGTGACTCAAAATCAAAAACACTTCCCAAATATTTCCAGGCAAGCTTTTACTTTCACAAGTATTTACTAGTTTTATAGACGGGCAAAAGTAAAATTTTAGTGTTAATATTTACTTTTGACTTATGTAATGTTTTAAGTATTCATCAGGTGGGAACTGTGGTTGAGTCCTCTTTGGACTTCTTTTCGGGTAGATTAACAAAGAAGGAAAGGAAAGCAACGCTTGCAGACGAATTGCTATCTGACCAGGCCCTTACTCAGTACAGGTTTGATCAATGTCATGCCCTCTTTCTGTTGCAAGTTTTTCTAGTGGTGATGAGGATTCCTTAAACCAGTTCTTCCATTGATTCGCCCCATAATTTCAATGACTCTTTTGTTTCATGCTAGAGAGTAATAATTCTGTTGCACTTTCAAGCATTTTGTTGTGCTGATGTCCTTTCAAAAACCCCTTGCAGGAAACGCAAAGTACAAGAAATCGAAGAGCAGAATCGATCTGCTGGCAACGATAAGTGGAAAATAAAGGGACGACATTCACGAAAACGGTCTAAGGAAAGGAGGAAGTAGTTAAGGTGGCTCAAAATTTTGACCAGGAAAACCAGATAAACACAGCGGATCAAATGAAGTTAGGTGGGGGGCTGTGTGATACAAAAGTACGTGAATTGATCACGGGTACTTCTGGCTCCAACATAGTTTATGTGCTAGGTGAAGTCCAACAATACTTTTAATGTAACTTTGTACTCTGTAGAGTGGGGTGAACAAGAACTAAAGTTTATCTTTTATGGCTATTGAATTTCTTCCCTGCCAAATTTGATTCCGCATTTCCTTCATTCCGGTATCTGTCTCTGGTTTAGATGGTCACCTCGGAAAAAATAGCAATGAACAACTCATCCAACTTCTCACACTAGCAAATATCACTGCCATGTTTCCCCTTATTGTCTTTTCATGTACATAAATCAAGATATCCTGGCTTCTTTCCAAAGAGA

mRNA sequence

TAACCTTCGCGCGTCCGATTTGGATTGAGAAAAATAAGGGTTTTCGCGCGTCCGATTTTGTCCCAAACCCTCACGATCTCACTCTCTCACACTCTCACACTCTCACACTCTCACATTCTCTTCCCTCTCTGCCAATCTTCCTCAATCTCACAATCTTGCGCTGCGTAAGACGGATTAAGCCGTGGGTTTGTTCGCTTGGAGGTCGTTTTGGTGGCGTTGCCGTGTTGCGGTCGTGTTAGCGGCCGTCCACCGTTCGCAGTGGAAGTTGTGCGTAGCAGAATTTAGGGAAAATAAAAATCTGATCGCCCATAAAACGAAAACCCAACCTGACCAGGAACTGATTGATTTTGTTTTTCCTTTTTAAATTTGTCGTAGATGTCAGAAATAAAGCCTATCATTGGCCTCTCTTGGGAGCCAAACCTACCAACCTCCTCATTGGGGATCAAAACTAAGGCTTGTGACAATTCTCACAGTCAAGCAGAAAATAGCCTTGTTTGGAAAATCAACTCAGAGCTTGTAGATGGGCTGTTTGTTCCACCAAACAACCCAAAAAAGTTGAATAATTTACTGAGAAAGCAAGTCAGTGACACGGCTGGGAGGAGCTGGTTTGACATGGCAGCACAAACCATGACCCCTGAAGTGGAAGAAGACTTGCGCTTGTTGAAGCTGAGGAGTGTCATTGATCCAAAGAGACACTACAAGAAGGGTGACTCAAAATCAAAAACACTTCCCAAATATTTCCAGGCAAGCTTTTACTTTCACAAGAAACGCAAAGTACAAGAAATCGAAGAGCAGAATCGATCTGCTGGCAACGATAAGTGGAAAATAAAGGGACGACATTCACGAAAACGGTCTAAGGAAAGGAGGAAGTAGTTAAGGTGGCTCAAAATTTTGACCAGGAAAACCAGATAAACACAGCGGATCAAATGAAGTTAGGTGGGGGGCTGTGTGATACAAAAGTACGTGAATTGATCACGGGTACTTCTGGCTCCAACATAGTTTATGTGCTAGGTGAAGTCCAACAATACTTTTAATGTAACTTTGTACTCTGTAGAGTGGGGTGAACAAGAACTAAAGTTTATCTTTTATGGCTATTGAATTTCTTCCCTGCCAAATTTGATTCCGCATTTCCTTCATTCCGGTATCTGTCTCTGGTTTAGATGGTCACCTCGGAAAAAATAGCAATGAACAACTCATCCAACTTCTCACACTAGCAAATATCACTGCCATGTTTCCCCTTATTGTCTTTTCATGTACATAAATCAAGATATCCTGGCTTCTTTCCAAAGAGA

Coding sequence (CDS)

ATGTCAGAAATAAAGCCTATCATTGGCCTCTCTTGGGAGCCAAACCTACCAACCTCCTCATTGGGGATCAAAACTAAGGCTTGTGACAATTCTCACAGTCAAGCAGAAAATAGCCTTGTTTGGAAAATCAACTCAGAGCTTGTAGATGGGCTGTTTGTTCCACCAAACAACCCAAAAAAGTTGAATAATTTACTGAGAAAGCAAGTCAGTGACACGGCTGGGAGGAGCTGGTTTGACATGGCAGCACAAACCATGACCCCTGAAGTGGAAGAAGACTTGCGCTTGTTGAAGCTGAGGAGTGTCATTGATCCAAAGAGACACTACAAGAAGGGTGACTCAAAATCAAAAACACTTCCCAAATATTTCCAGGCAAGCTTTTACTTTCACAAGAAACGCAAAGTACAAGAAATCGAAGAGCAGAATCGATCTGCTGGCAACGATAAGTGGAAAATAAAGGGACGACATTCACGAAAACGGTCTAAGGAAAGGAGGAAGTAG

Protein sequence

MSEIKPIIGLSWEPNLPTSSLGIKTKACDNSHSQAENSLVWKINSELVDGLFVPPNNPKKLNNLLRKQVSDTAGRSWFDMAAQTMTPEVEEDLRLLKLRSVIDPKRHYKKGDSKSKTLPKYFQASFYFHKKRKVQEIEEQNRSAGNDKWKIKGRHSRKRSKERRK

Homology

[Close]

BLAST of Cp4.1LG01g11930 vs. ExPASy Swiss-Prot
Match: O42877 (rRNA-processing protein fcf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=fcf2 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-11
Identity = 30/58 (51.72%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 66  RKQVSDTAGRSWFDMAAQTMTPEVEEDLRLLKLRSVIDPKRHYKKGDSKSKTLPKYFQ 124
           +K + DTAG +WFDM A  +T  V+ D++LLK+R+ +DPKRHY++ ++KS  +PKYFQ
Sbjct: 104 KKNIKDTAGSNWFDMPATELTESVKRDIQLLKMRNALDPKRHYRRENTKS--MPKYFQ 159

[Close]

BLAST of Cp4.1LG01g11930 vs. ExPASy Swiss-Prot
Match: Q8R2M2 (Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Mus musculus OX=10090 GN=Dnttip2 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.3e-09
Identity = 43/101 (42.57%), Postives = 53/101 (52.48%), Query Frame = 0


Query: 53  VPPNNPKK--LNNLLRKQVSDTAGRSWFDMAAQTMTPEVEEDLRLLKLRSVIDPKRHYKK 112
           VPP +  K  L    RK+   TAG  WF M A  +T E++ DLR LK+R+ +DPKR YKK
Sbjct: 621 VPPYSESKHRLQKQRRKERQKTAGNGWFGMKAPELTDELKNDLRALKMRAGMDPKRFYKK 680

Query: 113 GDSKSKTLPKYFQ--------ASFYF----HKKRKVQEIEE 140
            D      PKYFQ        A FY      K+RK   +EE
Sbjct: 681 NDRDG--FPKYFQVGTIVDNPADFYHSRIPKKQRKKTIVEE 719

[Close]

BLAST of Cp4.1LG01g11930 vs. ExPASy Swiss-Prot
Match: Q5QJE6 (Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Homo sapiens OX=9606 GN=DNTTIP2 PE=1 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 7.3e-09
Identity = 43/101 (42.57%), Postives = 53/101 (52.48%), Query Frame = 0


Query: 53  VPPNNPKK--LNNLLRKQVSDTAGRSWFDMAAQTMTPEVEEDLRLLKLRSVIDPKRHYKK 112
           VPP +  K  L    RK+   TAG  WF M A  MT E++ DL+ LK+R+ +DPKR YKK
Sbjct: 619 VPPYSESKYQLQKKRRKERQKTAGDGWFGMKAPEMTNELKNDLKALKMRASMDPKRFYKK 678

Query: 113 GDSKSKTLPKYFQ--------ASFYF----HKKRKVQEIEE 140
            D      PKYFQ        A FY      K+RK   +EE
Sbjct: 679 NDRDG--FPKYFQIGTIVDNPADFYHSRIPKKQRKRTIVEE 717

[Close]

BLAST of Cp4.1LG01g11930 vs. ExPASy Swiss-Prot
Match: Q0P5H2 (Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Bos taurus OX=9913 GN=DNTTIP2 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-08
Identity = 43/111 (38.74%), Postives = 55/111 (49.55%), Query Frame = 0


Query: 43  INSELVDGLFVPP--NNPKKLNNLLRKQVSDTAGRSWFDMAAQTMTPEVEEDLRLLKLRS 102
           I  E      VPP   +  KL    R++   TAG  WF M A  +T E++ DL+ LK+R+
Sbjct: 619 ITPEFEKNYCVPPYSESKYKLQKKRRQERQKTAGDGWFGMKAPELTDELKNDLKALKMRA 678

Query: 103 VIDPKRHYKKGDSKSKTLPKYFQ--------ASFYF----HKKRKVQEIEE 140
            +DPKR YKK D      PKYFQ        A FY      K+RK   +EE
Sbjct: 679 SMDPKRFYKKNDRDG--FPKYFQIGTIVDNPADFYHSRVPKKQRKRTIVEE 727

[Close]

BLAST of Cp4.1LG01g11930 vs. NCBI nr
Match: XP_023540909.1 (rRNA-processing protein fcf2-like [Cucurbita pepo subsp. pepo] >XP_023540916.1 rRNA-processing protein fcf2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 294 bits (752), Expect = 3.31e-99
Identity = 160/197 (81.22%), Postives = 163/197 (82.74%), Query Frame = 0


Query: 1   MSEIKPIIGLSWEPNLPTSSLGIKTKACDNSHSQAENSLVWKINSELVDGLFVPPNNPKK 60
           MSEIKPIIGLSWEPNLPTSSLGIKTKACDNSHSQAENSLVWKINSELVDGLFVPPNNPKK
Sbjct: 1   MSEIKPIIGLSWEPNLPTSSLGIKTKACDNSHSQAENSLVWKINSELVDGLFVPPNNPKK 60

Query: 61  LNNLLRKQVSDTAGRSWFDMAAQTMTPEVEEDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120
           LNNLLRKQVSDTAGRSWFDMAAQTMTPEVEEDLRLLKLRSVIDPKRHYKKGDSKSKTLPK
Sbjct: 61  LNNLLRKQVSDTAGRSWFDMAAQTMTPEVEEDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 YFQ------ASFYF--------------------------HKKRKVQEIEEQNRSAGNDK 165
           YFQ      +S  F                          ++KRKVQEIEEQNRSAGNDK
Sbjct: 121 YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRSAGNDK 180

[Close]

BLAST of Cp4.1LG01g11930 vs. NCBI nr
Match: XP_022954379.1 (rRNA-processing protein fcf2-like [Cucurbita moschata] >XP_022954380.1 rRNA-processing protein fcf2-like [Cucurbita moschata])

HSP 1 Score: 285 bits (729), Expect = 1.06e-95
Identity = 156/197 (79.19%), Postives = 161/197 (81.73%), Query Frame = 0


Query: 1   MSEIKPIIGLSWEPNLPTSSLGIKTKACDNSHSQAENSLVWKINSELVDGLFVPPNNPKK 60
           MSEIKPIIGLSWEPNLP SSLGIKTKACDNSHSQAENSLVWKINSELVDGLFVPPNNPKK
Sbjct: 1   MSEIKPIIGLSWEPNLPASSLGIKTKACDNSHSQAENSLVWKINSELVDGLFVPPNNPKK 60

Query: 61  LNNLLRKQVSDTAGRSWFDMAAQTMTPEVEEDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120
           LNNLLRKQVSDTAGRSWFDMAAQTMT EVEEDLRLLKLRSVIDPKRHYKKGDSKSKTLPK
Sbjct: 61  LNNLLRKQVSDTAGRSWFDMAAQTMTLEVEEDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 YFQ------ASFYF--------------------------HKKRKVQEIEEQNRSAGNDK 165
           YFQ      +S  F                          ++KR+VQEIEEQNRSAGNDK
Sbjct: 121 YFQVGTVVESSLDFFSGRLTKKERRATLADELLSDQALTQYRKREVQEIEEQNRSAGNDK 180

[Close]

BLAST of Cp4.1LG01g11930 vs. NCBI nr
Match: XP_022992000.1 (rRNA-processing protein fcf2-like [Cucurbita maxima] >XP_022992001.1 rRNA-processing protein fcf2-like [Cucurbita maxima])

HSP 1 Score: 284 bits (727), Expect = 2.13e-95
Identity = 155/197 (78.68%), Postives = 158/197 (80.20%), Query Frame = 0


Query: 1   MSEIKPIIGLSWEPNLPTSSLGIKTKACDNSHSQAENSLVWKINSELVDGLFVPPNNPKK 60
           MSEIKPIIGLSWEP LP SSLGIKTKACDNSHSQAENSLVWKINSELVDGLFVPPNNPKK
Sbjct: 1   MSEIKPIIGLSWEPKLPASSLGIKTKACDNSHSQAENSLVWKINSELVDGLFVPPNNPKK 60

Query: 61  LNNLLRKQVSDTAGRSWFDMAAQTMTPEVEEDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120
           LNNLLRKQVSDTAGRSW  MAAQTMTPEVEEDLRLLKLRSVIDPKRHYKKGDSKSKTLPK
Sbjct: 61  LNNLLRKQVSDTAGRSWIGMAAQTMTPEVEEDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 YFQAS--------FYF------------------------HKKRKVQEIEEQNRSAGNDK 165
           YFQ          F+                         ++KRKVQEIEEQNRSAGNDK
Sbjct: 121 YFQVGTVVECSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRSAGNDK 180

[Close]

BLAST of Cp4.1LG01g11930 vs. NCBI nr
Match: KAG7025366.1 (fcf2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 264 bits (675), Expect = 2.25e-87
Identity = 143/203 (70.44%), Postives = 150/203 (73.89%), Query Frame = 0


Query: 1   MSEIKPIIGLSWEPNLPTSSLGIKTKACDNSHSQAENSLVWKINSELVDGLFVPPNNPKK 60
           MS  KP+I LSWEP LPTSS GIKTKACD SHSQAEN LVWK NSELVDGLFVPPNNPKK
Sbjct: 1   MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAENGLVWKNNSELVDGLFVPPNNPKK 60

Query: 61  LNNLLRKQVSDTAGRSWFDMAAQTMTPEVEEDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120
           LN LLRKQVSDTAGRSWFDM AQTMTPE+E+DLRLLKLRSVIDPKRHYKKGDSKSKTLPK
Sbjct: 61  LNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 YFQASFYFH---------------------------------------KKRKVQEIEEQN 164
           YFQASFY +                                       +KRKVQEIEEQN
Sbjct: 121 YFQASFYIYQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQN 180

[Close]

BLAST of Cp4.1LG01g11930 vs. NCBI nr
Match: XP_038876081.1 (rRNA-processing protein fcf2 [Benincasa hispida] >XP_038876082.1 rRNA-processing protein fcf2 [Benincasa hispida])

HSP 1 Score: 258 bits (660), Expect = 3.41e-85
Identity = 140/196 (71.43%), Postives = 151/196 (77.04%), Query Frame = 0


Query: 1   MSEIKPIIGLSWEPNLPTSSLGIKTKACDNSHSQAENSLVWKINSELVDGLFVPPNNPKK 60
           MSE KPIIGLSWEP LP SS GI+TKACD S++QAEN LVWK NSELVDGLFVPPNNPKK
Sbjct: 1   MSEKKPIIGLSWEPKLPASSSGIRTKACDKSNTQAENGLVWKTNSELVDGLFVPPNNPKK 60

Query: 61  LNNLLRKQVSDTAGRSWFDMAAQTMTPEVEEDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120
           LN LLRKQV DTAGR+WFDM AQTMTPEVE+DLRLLKLRSVIDPKRHYKKGDSKSKTLPK
Sbjct: 61  LNKLLRKQVRDTAGRNWFDMPAQTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 YFQ------ASFYF--------------------------HKKRKVQEIEEQNRSAGNDK 164
           YFQ      +S  F                          ++KRKVQEIEEQNR AGNDK
Sbjct: 121 YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPAGNDK 180

[Close]

BLAST of Cp4.1LG01g11930 vs. ExPASy TrEMBL
Match: A0A6J1GSU3 (rRNA-processing protein fcf2-like OS=Cucurbita moschata OX=3662 GN=LOC111456634 PE=4 SV=1)

HSP 1 Score: 285 bits (729), Expect = 5.12e-96
Identity = 156/197 (79.19%), Postives = 161/197 (81.73%), Query Frame = 0


Query: 1   MSEIKPIIGLSWEPNLPTSSLGIKTKACDNSHSQAENSLVWKINSELVDGLFVPPNNPKK 60
           MSEIKPIIGLSWEPNLP SSLGIKTKACDNSHSQAENSLVWKINSELVDGLFVPPNNPKK
Sbjct: 1   MSEIKPIIGLSWEPNLPASSLGIKTKACDNSHSQAENSLVWKINSELVDGLFVPPNNPKK 60

Query: 61  LNNLLRKQVSDTAGRSWFDMAAQTMTPEVEEDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120
           LNNLLRKQVSDTAGRSWFDMAAQTMT EVEEDLRLLKLRSVIDPKRHYKKGDSKSKTLPK
Sbjct: 61  LNNLLRKQVSDTAGRSWFDMAAQTMTLEVEEDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 YFQ------ASFYF--------------------------HKKRKVQEIEEQNRSAGNDK 165
           YFQ      +S  F                          ++KR+VQEIEEQNRSAGNDK
Sbjct: 121 YFQVGTVVESSLDFFSGRLTKKERRATLADELLSDQALTQYRKREVQEIEEQNRSAGNDK 180

[Close]

BLAST of Cp4.1LG01g11930 vs. ExPASy TrEMBL
Match: A0A6J1JSD0 (rRNA-processing protein fcf2-like OS=Cucurbita maxima OX=3661 GN=LOC111488480 PE=4 SV=1)

HSP 1 Score: 284 bits (727), Expect = 1.03e-95
Identity = 155/197 (78.68%), Postives = 158/197 (80.20%), Query Frame = 0


Query: 1   MSEIKPIIGLSWEPNLPTSSLGIKTKACDNSHSQAENSLVWKINSELVDGLFVPPNNPKK 60
           MSEIKPIIGLSWEP LP SSLGIKTKACDNSHSQAENSLVWKINSELVDGLFVPPNNPKK
Sbjct: 1   MSEIKPIIGLSWEPKLPASSLGIKTKACDNSHSQAENSLVWKINSELVDGLFVPPNNPKK 60

Query: 61  LNNLLRKQVSDTAGRSWFDMAAQTMTPEVEEDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120
           LNNLLRKQVSDTAGRSW  MAAQTMTPEVEEDLRLLKLRSVIDPKRHYKKGDSKSKTLPK
Sbjct: 61  LNNLLRKQVSDTAGRSWIGMAAQTMTPEVEEDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 YFQAS--------FYF------------------------HKKRKVQEIEEQNRSAGNDK 165
           YFQ          F+                         ++KRKVQEIEEQNRSAGNDK
Sbjct: 121 YFQVGTVVECSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRSAGNDK 180

[Close]

BLAST of Cp4.1LG01g11930 vs. ExPASy TrEMBL
Match: A0A6J1KU17 (rRNA-processing protein fcf2-like OS=Cucurbita maxima OX=3661 GN=LOC111498206 PE=4 SV=1)

HSP 1 Score: 256 bits (654), Expect = 1.40e-84
Identity = 140/196 (71.43%), Postives = 149/196 (76.02%), Query Frame = 0


Query: 1   MSEIKPIIGLSWEPNLPTSSLGIKTKACDNSHSQAENSLVWKINSELVDGLFVPPNNPKK 60
           MS  KP+I LSWEP LPTSS GIKTKACD SHSQAEN LVWK NSELVDGLFVPPNNPKK
Sbjct: 2   MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAENGLVWKNNSELVDGLFVPPNNPKK 61

Query: 61  LNNLLRKQVSDTAGRSWFDMAAQTMTPEVEEDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120
           LN LLRKQVSDTAGRSWFDM AQTMTPE+E+DLRLLKLRSVIDPKRHYKKGDSKSKTLPK
Sbjct: 62  LNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 121

Query: 121 YFQ------ASFYF--------------------------HKKRKVQEIEEQNRSAGNDK 164
           YFQ      +S  F                          ++KRKVQEIEEQNR  GNDK
Sbjct: 122 YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPGGNDK 181

[Close]

BLAST of Cp4.1LG01g11930 vs. ExPASy TrEMBL
Match: A0A6J1H9T2 (rRNA-processing protein fcf2-like OS=Cucurbita moschata OX=3662 GN=LOC111460917 PE=4 SV=1)

HSP 1 Score: 254 bits (648), Expect = 1.11e-83
Identity = 139/196 (70.92%), Postives = 148/196 (75.51%), Query Frame = 0


Query: 1   MSEIKPIIGLSWEPNLPTSSLGIKTKACDNSHSQAENSLVWKINSELVDGLFVPPNNPKK 60
           MS  KP+I LSWEP LPTSS GIKTKACD SHSQA N LVWK NSELVDGLFVPPNNPKK
Sbjct: 1   MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAGNGLVWKNNSELVDGLFVPPNNPKK 60

Query: 61  LNNLLRKQVSDTAGRSWFDMAAQTMTPEVEEDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120
           LN LLRKQVSDTAGR+WFDM AQTMTPE+E+DLRLLKLRSVIDPKRHYKKGDSKSKTLPK
Sbjct: 61  LNKLLRKQVSDTAGRNWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 YFQ------ASFYF--------------------------HKKRKVQEIEEQNRSAGNDK 164
           YFQ      +S  F                          ++KRKVQEIEEQNR  GNDK
Sbjct: 121 YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPGGNDK 180

[Close]

BLAST of Cp4.1LG01g11930 vs. ExPASy TrEMBL
Match: A0A6J1DMD6 (rRNA-processing protein fcf2 OS=Momordica charantia OX=3673 GN=LOC111022552 PE=4 SV=1)

HSP 1 Score: 253 bits (647), Expect = 1.57e-83
Identity = 138/196 (70.41%), Postives = 149/196 (76.02%), Query Frame = 0


Query: 1   MSEIKPIIGLSWEPNLPTSSLGIKTKACDNSHSQAENSLVWKINSELVDGLFVPPNNPKK 60
           MSE KP+IGLSWEP L TSS GIKTK CD SH Q E+SLVWK N+ELVDGLFVPPNNPKK
Sbjct: 1   MSEKKPVIGLSWEPKLATSSSGIKTKTCDKSHIQPESSLVWKTNTELVDGLFVPPNNPKK 60

Query: 61  LNNLLRKQVSDTAGRSWFDMAAQTMTPEVEEDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120
           LN LLRKQVSDTAGRSWFDM AQTMTPE+E+DLRLLKLRSVIDPKRHYKKGDSKSKTLPK
Sbjct: 61  LNKLLRKQVSDTAGRSWFDMPAQTMTPELEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 YFQ------ASFYF--------------------------HKKRKVQEIEEQNRSAGNDK 164
           YFQ      +S  F                          ++KRKV+EIEE NR AGNDK
Sbjct: 121 YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEELNRPAGNDK 180

[Close]

BLAST of Cp4.1LG01g11930 vs. TAIR 10
Match: AT5G30495.2 (Fcf2 pre-rRNA processing protein )

HSP 1 Score: 157.9 bits (398), Expect = 6.9e-39
Identity = 89/197 (45.18%), Postives = 118/197 (59.90%), Query Frame = 0


Query: 1   MSEIKPIIGLSWEPNLPTSSLGIKTKACDNSHSQA---ENSLVWKINSELVDGLFVPPNN 60
           M+E KP+IGL+WEP LP   L + TK C  S  +    E+S +W   SELVDGL +PPN+
Sbjct: 1   MAETKPLIGLTWEPKLP--GLSLDTKTCSTSSKRVESHESSSLWMSKSELVDGLCLPPND 60

Query: 61  PKKLNNLLRKQVSDTAGRSWFDMAAQTMTPEVEEDLRLLKLRSVIDPKRHYKKGDSKSKT 120
           PKK+N ++RKQ+ DT G +WFDM A TMTPE++ DL+LLKLR+V+DP  HYKK  S+SK 
Sbjct: 61  PKKINKMIRKQIKDTTGSNWFDMPAPTMTPELKRDLQLLKLRTVMDPAVHYKKSVSRSKL 120

Query: 121 LPKYFQ--------ASFY-----------------------FHKKRKVQEIEEQNRSAGN 164
             KYFQ          FY                        ++KRKV+EIEE++R+  N
Sbjct: 121 AEKYFQIGTVIEPAEEFYGRLTKKNRKATLADELVSDPKVSQYRKRKVKEIEEKSRAVTN 180

[Close]

BLAST of Cp4.1LG01g11930 vs. TAIR 10
Match: AT5G30495.1 (Fcf2 pre-rRNA processing protein )

HSP 1 Score: 157.9 bits (398), Expect = 6.9e-39
Identity = 89/197 (45.18%), Postives = 118/197 (59.90%), Query Frame = 0


Query: 1   MSEIKPIIGLSWEPNLPTSSLGIKTKACDNSHSQA---ENSLVWKINSELVDGLFVPPNN 60
           M+E KP+IGL+WEP LP   L + TK C  S  +    E+S +W   SELVDGL +PPN+
Sbjct: 1   MAETKPLIGLTWEPKLP--GLSLDTKTCSTSSKRVESHESSSLWMSKSELVDGLCLPPND 60

Query: 61  PKKLNNLLRKQVSDTAGRSWFDMAAQTMTPEVEEDLRLLKLRSVIDPKRHYKKGDSKSKT 120
           PKK+N ++RKQ+ DT G +WFDM A TMTPE++ DL+LLKLR+V+DP  HYKK  S+SK 
Sbjct: 61  PKKINKMIRKQIKDTTGSNWFDMPAPTMTPELKRDLQLLKLRTVMDPAVHYKKSVSRSKL 120

Query: 121 LPKYFQ--------ASFY-----------------------FHKKRKVQEIEEQNRSAGN 164
             KYFQ          FY                        ++KRKV+EIEE++R+  N
Sbjct: 121 AEKYFQIGTVIEPAEEFYGRLTKKNRKATLADELVSDPKVSQYRKRKVKEIEEKSRAVTN 180

[Close]

BLAST of Cp4.1LG01g11930 vs. TAIR 10
Match: AT1G54770.1 (Fcf2 pre-rRNA processing protein )

HSP 1 Score: 142.9 bits (359), Expect = 2.3e-34
Identity = 90/196 (45.92%), Postives = 116/196 (59.18%), Query Frame = 0


Query: 1   MSEIK-PIIGLSWEPNLPTSSLGIKTKACDNSHSQAENSLVWKINSELVDGLFVPPNNPK 60
           M+E K P+IGL WEP LP  SL +KT +       AE+S      SELVDGL +PPN+P+
Sbjct: 1   MAETKQPLIGLKWEPKLPGLSLDLKTGS--TRSKTAESS-----KSELVDGLCLPPNDPR 60

Query: 61  KLNNLLRKQVSDTAGRSWFDMAAQTMTPEVEEDLRLLKLRSVIDPKRHYKKGDSKSKTLP 120
           K+N ++RKQ+ DT G +WFDM A TMTPE++ DL+LLKLR+V+DP  HYKK  S+SK   
Sbjct: 61  KINKMIRKQLKDTTGSNWFDMPAPTMTPELKRDLQLLKLRTVMDPALHYKKSVSRSKLAE 120

Query: 121 KYFQ--------ASFY-----------------------FHKKRKVQEIEEQNRSAGNDK 165
           KYFQ          FY                        ++KRKV+EIEE++R+  N K
Sbjct: 121 KYFQIGTVIEPAEEFYGRLTKKNRKATLADELVSDPKTALYRKRKVREIEEKSRAVTNKK 180

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g11930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O42877	2.0e-11	51.72	rRNA-processing protein fcf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
Q8R2M2	3.3e-09	42.57	Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Mus musculus OX=10...	[more]
Q5QJE6	7.3e-09	42.57	Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Homo sapiens OX=96...	[more]
Q0P5H2	1.6e-08	38.74	Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Bos taurus OX=9913...	[more]

BLAST of Cp4.1LG01g11930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023540909.1	3.31e-99	81.22	rRNA-processing protein fcf2-like [Cucurbita pepo subsp. pepo] >XP_023540916.1 r...	[more]
XP_022954379.1	1.06e-95	79.19	rRNA-processing protein fcf2-like [Cucurbita moschata] >XP_022954380.1 rRNA-proc...	[more]
XP_022992000.1	2.13e-95	78.68	rRNA-processing protein fcf2-like [Cucurbita maxima] >XP_022992001.1 rRNA-proces...	[more]
KAG7025366.1	2.25e-87	70.44	fcf2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038876081.1	3.41e-85	71.43	rRNA-processing protein fcf2 [Benincasa hispida] >XP_038876082.1 rRNA-processing...	[more]

BLAST of Cp4.1LG01g11930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GSU3	5.12e-96	79.19	rRNA-processing protein fcf2-like OS=Cucurbita moschata OX=3662 GN=LOC111456634 ...	[more]
A0A6J1JSD0	1.03e-95	78.68	rRNA-processing protein fcf2-like OS=Cucurbita maxima OX=3661 GN=LOC111488480 PE...	[more]
A0A6J1KU17	1.40e-84	71.43	rRNA-processing protein fcf2-like OS=Cucurbita maxima OX=3661 GN=LOC111498206 PE...	[more]
A0A6J1H9T2	1.11e-83	70.92	rRNA-processing protein fcf2-like OS=Cucurbita moschata OX=3662 GN=LOC111460917 ...	[more]
A0A6J1DMD6	1.57e-83	70.41	rRNA-processing protein fcf2 OS=Momordica charantia OX=3673 GN=LOC111022552 PE=4...	[more]

BLAST of Cp4.1LG01g11930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G30495.2	6.9e-39	45.18	Fcf2 pre-rRNA processing protein	[more]
AT5G30495.1	6.9e-39	45.18	Fcf2 pre-rRNA processing protein	[more]
AT1G54770.1	2.3e-34	45.92	Fcf2 pre-rRNA processing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014810	Fcf2 pre-rRNA processing, C-terminal	PFAM	PF08698	Fcf2	coord: 71..130 e-value: 1.0E-18 score: 67.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..165
IPR039883	Fcf2/DNTTIP2	PANTHER	PTHR21686	UNCHARACTERIZED	coord: 7..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g11930.1	Cp4.1LG01g11930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005730	nucleolus