Cp4.1LG01g11510 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g11510
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	sister chromatid cohesion 1 protein 1
Location	Cp4.1LG01: 6072124 .. 6077345 (+)
RNA-Seq Expression	Cp4.1LG01g11510
Synteny	Cp4.1LG01g11510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGGCTGCAACAATGCACGCAAAGATCAATAGGAGAAAGCTCGATAAGCTGAACATAATCAAAATTTGGTAATGGAAAAACAAATGGAGGTAGGTTTCTTCAATTTGTTAGTGTTTGTTTAGTTTTGATTTTTATGCGGTATTTTGCAGTGAGGAGATTTTGAATCCTTCGGTTCCAATGGCTCTCAGACTCTCGGGGATTCTCATGGGTAATCGTCCTTCAATATCTTCGATTTTCTCAGAATTTTAACGCTCTGTTTTTCATCTTAGTAACAGAGTAGTGTCTCTCTGCTTCATTTTTCTCAGGCGGTGTTGTCATTGTCTATGAACGAAAAGTTAAAATTCTTTACGGTAATCTTATAATCACTTTTTTATAAAGGAATATATTGATTTAAGGTTTAAATGCTGTCTCTGAAGGACTGCGTACTTTTTTTCTTTTTTAATCACAGAGGATGTAACTCGGCTTCTGGTAATTACTCAAGTCTGAGTTCTATCAATAGAGTAACGTTTGCCTTTTCGTTTTCTTATTTTAATGAACATGTTGATTGGCTTCGTTTTCCGAAATGGATTTTCTCAGGTTGAGATAAACGAAGCGTGGAAGGTGAAAGCAGCTCCAGAGCCCACCGTCATTCCCAAAGGAAAATCTGTGGCCAAGTACGTCACTACTCTCCTTCTCCTAATAGAAATGCATAATCATCTAATTATTCATTTACTTCGAAAAAGAATGCGTGTGCACTAGAGAATATGAATAACTTGAATAATGGACCGGGTTGCTTCCGGGTCCAAAATAAGATGGATCCTGTGCGGATTAAGATGGTGATTTTGACTCGGAATTTGTAATGTTATGATTTTCACGTGTCCATAGTCCCAAAGTATGATGAGCTAGGGGCGGGTTAAGGAGGTGATTTCGACCCTGAATTTGTCTGTTTATGATTTTCATGCGTCCACAGTCCAAAATAATCAAGTCGTTTTTGTAATTTTTCTTATTATGTGCTTCATACGTTCACTGCCCAAAATGTAAGATGAGATTCGGGAAGGCTAAGAATGTGATTTTGAGTCTGAATTTATTTGGTGATGATTTTCATATGTTCACAGTTAAAAGTAAGACGATTTGTGAGTTAAGATGGTGATTTGGCTCTGGATTTGTTTGATTATATTATCATATGTCCATATATATGGCCGGTTAAGAAGGCGATATTGATTCTGAATTATTTGGTTACGATTTATGTATGTCCACATGTACTCAGGAAGGAGGCTGTTACTCGGCCTAAAAAGGATCCGAAAGACGTGGGAGATCATGAGGCACAGTCCATTAACTTCTCCTACAACACCTCTCCAATGAAGTTCCAACAAACCGCATTTTTTACTATGGTAAGCCGTAGAAGAGAATGCCCTTTTCTTGGGTTCAACAGTTTATAGAAATTCAGTAGTTCCCATCTAGATATATGTTCCATGCCAGTCCCGAGCACTGTAAAAATGGACTTGGGAGAGTAGAATCCCAAAAGGTTATCGAAGATTGATCTATCAGATAGACGCGTATAGAAGAACACTGGATACGGGTTTCGAAGGGAACTGATTTATTTTGGTAATATCATACTATTTTTATGTTCTTTGAAACAAATTATGGAAGTTTGGTAGCTTTTCTTTTGGGGGTTAACTTTTTGTTTTCAATTACCAATTATTGATTGGTAGGTTTTTCTACGTTTGCAGCGGCTTGACAGTGTGGATGAACCATATATCCACGAGAAAACAGTGGAAGATGATGCGTCACATAACTTCCATCAAAGTCTTAATCTGTCCCTTGAACACTCTCACTTAATTTCTGCATAACTATTAAATTCATGATGCGTTCTAACTACTAATGATCTTGGTTGTTCTCTTGCTCAGCTGATGCTGAAAATATAACCTTACTCGAGCGTTTTGATATGTATCAATCAAATACAAATACATTCAATCGGTTTGAAAGGTGAATTCTTAACTTGCATGGACGGAACTTTGCGTTATCTATACAATTTCTTTTCTATCTTCTCTTTCTCAAAAAATTGAGCCGGCAAGCTTTTGTGTTTATTGGAGCTCGAAAACACACACGCTATTCCCAAATTGTGATGCTTCACTTGCCGTAGTGATAATTCAAATCGCTATTTGAAATCCCTCTGAGCTGAAATGGTAAAAAAGGAAGCAACAACATCAATTTTTTGTGCTGGATTTGTAGATTTGATATTGAAGATGATGAGGATACACAGCCGAATTTTGCTTCTGTAGATCAAACAAAAATTCCAGATACTTTTGGACCTTCCCCTCCTCAAGACAAGCATCAAGAAGGTAAGATACATTATCATGATTTGGTACTTAATACGTCATCAACTGCATCATATATGTAATACCATATTCATAATTCATAAATTATAAGAAAATGCAGTTTTAAGTTCAATCTTCTCGTCCCCATCATTCATGGGTTCTCTATTTTTGAGTTGGTGCATTCCAAAGTATTTATTGACTTTGGGAGGAGTGAAATAAATATGACCATGTGAACGCTTCATCTACTTGTTTTTTTTTTTTTTCACTACATCCTAGAAATGAGCAGCTGTTCCAAACTCATGGCTTGAGGGAAAGAAAATTATAAATAGCCTCCACTCTTCTCTTTTTTCCATGAAGTATCTTCTTCTTCCTTCTAGAAGGAATATCTTCTGCAAAGCAGAGTCTACTATATTTTCACTTGATGAAAAATAGATCAGACCGGTCGATGGAAACTTGGTGCTTAGTAGCCTCTGGCTAAAACAGACTACTCCATTGATTTTTTTTTTTCTCAGAAGGGAGAGGAGGATTATCGGAGGGACACTATCTCTATTAGTATGAGATATTTTGGGAACTGAAAACAAAATCTTGAGAACTTACACTCAAAGTAGATGATAAATATCATACATTGTGGAGGTCCATTGTTTCTTCAATAATATCAAAGTCATCCTCTTAACCTATACTATTGTGGAGTCTCAAACTATGTCTATTGATATTGAGGTCTTTTGGGAAACCAAAAGTAAAATCATTAGAACTTGTACTCGAATTGGACAATGTCATACCACTGCGAGGCTCATTGTTATTAACTTGCTATTGCATTCCAAAATAACTTTCATCTTTGAATGTCAACTTTAGAAGAAATTTCATGTTTTTATGCATTTTCTTAGGGCCTCCTGATGCTGAAGTCCAGGACCAACATCTTGAACGCGATGTCATTCAGCAAGCCTACGAATCCAAGGAGCTCAGACAGGTATTCTTCGAGTATGATCAATAAAGAATAGATTAATTACACAATTCAGGCTTAACTAGACAATGAAGTGTATCCATTTAACACCAGGAGGAGCAGGTGGCAATAAAAAGGAAAACAAAAAGAACAGCAGCCTTTCTGATGGACTATGAAAAGACCATCATTCCTGGACACATATACCAATCTTGGCTGAAAGATGTTTCGGATCTTATCTCTAGAAGGGGAAAAAAGAGAAAGGTTCTCAGTCTCCAACATGCAGTTCTCAATTTACCTAATTTTCTATGTTACTTGATTTAGATAATGAGTACACTCCTGAACACTAATCATTTATTATCAAGCAAATTTTGCGCGCAAGTAAAAGTGCGCGTGAATATTGACTACAAGGTATATCTTAGGTACTTATTTTGATCCGACAGAGTGATGTCTGTGATAAGATTGATTTTCCACAAAATAACAAAAACTACAAACAAGTTAATAGTTAAGAGAGCTTCATGTTCTTTTGTAACAGCGGACAGGTGCAATGTCCTCTATGAAGATAGCCACTCTCATGGATCTTCCTCCTGTGGTGTTAAGTGGTCGCTTATTCACAGATGGAAGTAGAGAAGTCTATTATCCAGCTCCTCTGCTAGAGTTATGGATGAAAAGTATCCGAGACCCCCCTGACTCACCTTCTGGTTAGTATTATCCGTAACTCGACATTTCCATTAAAAGTATAGATTTGGGGAAAAGGAAATTTGATCATTTATTTTCTGCAGTGAGGAACTCTGCACCCTTACCTCCTGAACCATCACTGTCTTCACTGCCCGAGAGAGTTAACTTTCCAGATCACATGGATTTTGTAAGCCGTTAACCAACTTCAACAGATTTATTTCAAGTGTTGGACGAATACAATCTTTTCTCTTACACAAAGTCTTGATGCGAATTATGAAGGCTTATGAAAATCATTACAGTGGAGTTGGTTCCCAGTCATTTGGAGCTTCCATAGAGAAGCTAAGGACCAAACCAGTCAACGATGATATTCACGCCGAGATCCTTCTGGAAGAACTCAGACCGGACTTCATGAACAATGTTATGGGGATGGCTGAAAGAAATCAAGTGGTTACACCTGGAAATTCCGGTCCGTTTTCCTCATCTAAGCTAAATCAGTCTCTTCATTCCATCTCCATGGTAAGGACTCTGAGATGGCTATAACTTGTTCAAATAATTGTTGTCCATCTGAAAAAATAGGAATTGGAGTGAGGTCAGTTTCCAGCTCAGCATCTGAACATGGTGTGTTTGTATCTAATCCAGAGACCAATTCTGTACGGTTAGTAGTATAAATACTTACAGATTTTCCCTTTTGAACCCAAAACAAGAGTTTGTTTTGTGTTTAGGACAATAACACTATGACTGAAGTATTAACGATCAATAGATCCAACAAGAAAAGGCCTTATTCTTCATCAAGACAAAGTAGCGGAGGCCTCGAACCTGTAGCTGAGGAGAATCCATGGCATCACTCTGATCCAAACTTCAAGTTAGCGAGGTTGTCTGAAAATGATCCAGGTAAGTAAAACGCTAATCTATCTATAGCCTACACAATCTCCGTGGGCTCATTTCTCTATCTAGTTGAAATCTACGCACTAGAATTTATAAGTTGCTTTCACAGATTTATTGGTAGAAACTGCACCGACACAAACTCAAGTTACTCAACCCGCCATCAAGCATCCTCCTGCTGACAAGATAACAAATTCCATTCGCATGTAAATCCTCTTTTTATTTTTTTGCTCTGAAGTGTGTGTTTTAGCTGTTTCATCATTGATTGCTAAATGATAACAAAATCCTTCTTTCCATCTTGCCCATTTGAATGCTAAGGCAAATGAAGGCACATTTTGATACGCCAGGAGCCCCGCCAGCAGAATCTTTAAACAACTTGGCCGCTGGAATGAACCCCAAAGCAGCTGCTATGCTCTTCTACCAGACT

mRNA sequence

GATGGCTGCAACAATGCACGCAAAGATCAATAGGAGAAAGCTCGATAAGCTGAACATAATCAAAATTTGTGAGGAGATTTTGAATCCTTCGGTTCCAATGGCTCTCAGACTCTCGGGGATTCTCATGGGCGGTGTTGTCATTGTCTATGAACGAAAAGTTAAAATTCTTTACGAGGATGTAACTCGGCTTCTGGTTGAGATAAACGAAGCGTGGAAGGTGAAAGCAGCTCCAGAGCCCACCGTCATTCCCAAAGGAAAATCTGTGGCCAAATTTGATATTGAAGATGATGAGGATACACAGCCGAATTTTGCTTCTGTAGATCAAACAAAAATTCCAGATACTTTTGGACCTTCCCCTCCTCAAGACAAGCATCAAGAAGGGCCTCCTGATGCTGAAGTCCAGGACCAACATCTTGAACGCGATGTCATTCAGCAAGCCTACGAATCCAAGGAGCTCAGACAGCGGACAGGTGCAATGTCCTCTATGAAGATAGCCACTCTCATGGATCTTCCTCCTGTGGTGTTAAGTGGTCGCTTATTCACAGATGGAAGTAGAGAAGTCTATTATCCAGCTCCTCTGCTAGAGTTATGGATGAAAAGTATCCGAGACCCCCCTGACTCACCTTCTGTCTTGATGCGAATTATGAAGGCTTATGAAAATCATTACAGTGGAGTTGGTTCCCAGTCATTTGGAGCTTCCATAGAGAAGCTAAGGACCAAACCAGTCAACGATGATATTCACGCCGAGATCCTTCTGGAAGAACTCAGACCGGACTTCATGAACAATGTTATGGGGATGGCTGAAAGAAATCAAGTGGTTACACCTGGAAATTCCGGAATTGGAGTGAGGTCAGTTTCCAGCTCAGCATCTGAACATGGTGTGTTTGTATCTAATCCAGAGACCAATTCTGTACGATCCAACAAGAAAAGGCCTTATTCTTCATCAAGACAAAGTAGCGGAGGCCTCGAACCTGTAGCTGAGGAGAATCCATGGCATCACTCTGATCCAAACTTCAAGTTAGCGAGGTTGTCTGAAAATGATCCAGATTTATTGGTAGAAACTGCACCGACACAAACTCAAGTTACTCAACCCGCCATCAAGCATCCTCCTGCTGACAAGATAACAAATTCCATTCGCATGCAAATGAAGGCACATTTTGATACGCCAGGAGCCCCGCCAGCAGAATCTTTAAACAACTTGGCCGCTGGAATGAACCCCAAAGCAGCTGCTATGCTCTTCTACCAGACT

Coding sequence (CDS)

ATGGCTGCAACAATGCACGCAAAGATCAATAGGAGAAAGCTCGATAAGCTGAACATAATCAAAATTTGTGAGGAGATTTTGAATCCTTCGGTTCCAATGGCTCTCAGACTCTCGGGGATTCTCATGGGCGGTGTTGTCATTGTCTATGAACGAAAAGTTAAAATTCTTTACGAGGATGTAACTCGGCTTCTGGTTGAGATAAACGAAGCGTGGAAGGTGAAAGCAGCTCCAGAGCCCACCGTCATTCCCAAAGGAAAATCTGTGGCCAAATTTGATATTGAAGATGATGAGGATACACAGCCGAATTTTGCTTCTGTAGATCAAACAAAAATTCCAGATACTTTTGGACCTTCCCCTCCTCAAGACAAGCATCAAGAAGGGCCTCCTGATGCTGAAGTCCAGGACCAACATCTTGAACGCGATGTCATTCAGCAAGCCTACGAATCCAAGGAGCTCAGACAGCGGACAGGTGCAATGTCCTCTATGAAGATAGCCACTCTCATGGATCTTCCTCCTGTGGTGTTAAGTGGTCGCTTATTCACAGATGGAAGTAGAGAAGTCTATTATCCAGCTCCTCTGCTAGAGTTATGGATGAAAAGTATCCGAGACCCCCCTGACTCACCTTCTGTCTTGATGCGAATTATGAAGGCTTATGAAAATCATTACAGTGGAGTTGGTTCCCAGTCATTTGGAGCTTCCATAGAGAAGCTAAGGACCAAACCAGTCAACGATGATATTCACGCCGAGATCCTTCTGGAAGAACTCAGACCGGACTTCATGAACAATGTTATGGGGATGGCTGAAAGAAATCAAGTGGTTACACCTGGAAATTCCGGAATTGGAGTGAGGTCAGTTTCCAGCTCAGCATCTGAACATGGTGTGTTTGTATCTAATCCAGAGACCAATTCTGTACGATCCAACAAGAAAAGGCCTTATTCTTCATCAAGACAAAGTAGCGGAGGCCTCGAACCTGTAGCTGAGGAGAATCCATGGCATCACTCTGATCCAAACTTCAAGTTAGCGAGGTTGTCTGAAAATGATCCAGATTTATTGGTAGAAACTGCACCGACACAAACTCAAGTTACTCAACCCGCCATCAAGCATCCTCCTGCTGACAAGATAACAAATTCCATTCGCATGCAAATGAAGGCACATTTTGATACGCCAGGAGCCCCGCCAGCAGAATCTTTAAACAACTTGGCCGCTGGAATGAACCCCAAAGCAGCTGCTATGCTCTTCTACCAGACT

Protein sequence

MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDVTRLLVEINEAWKVKAAPEPTVIPKGKSVAKFDIEDDEDTQPNFASVDQTKIPDTFGPSPPQDKHQEGPPDAEVQDQHLERDVIQQAYESKELRQRTGAMSSMKIATLMDLPPVVLSGRLFTDGSREVYYPAPLLELWMKSIRDPPDSPSVLMRIMKAYENHYSGVGSQSFGASIEKLRTKPVNDDIHAEILLEELRPDFMNNVMGMAERNQVVTPGNSGIGVRSVSSSASEHGVFVSNPETNSVRSNKKRPYSSSRQSSGGLEPVAEENPWHHSDPNFKLARLSENDPDLLVETAPTQTQVTQPAIKHPPADKITNSIRMQMKAHFDTPGAPPAESLNNLAAGMNPKAAAMLFYQT

Homology

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BLAST of Cp4.1LG01g11510 vs. ExPASy Swiss-Prot
Match: Q9S7T7 (Sister chromatid cohesion 1 protein 1 OS=Arabidopsis thaliana OX=3702 GN=SYN1 PE=2 SV=2)

HSP 1 Score: 218.4 bits (555), Expect = 1.5e-55
Identity = 192/584 (32.88%), Postives = 262/584 (44.86%), Query Frame = 0


Query: 1   MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV 60
           MAAT+HAKINR+KLDKL+II+ICEEILNPSVPMALRLSGILMGGVVIVYERKVK+L++DV
Sbjct: 29  MAATLHAKINRKKLDKLDIIQICEEILNPSVPMALRLSGILMGGVVIVYERKVKLLFDDV 88

Query: 61  TRLLVEINEAWKVKAAPEPTVIPKGKSVA------------------------------- 120
            R LVEIN AW+ K+ P+PT++PKGK+ A                               
Sbjct: 89  NRFLVEINGAWRTKSVPDPTLLPKGKTHARKEAVTLPENEEADFGDFEQTRNVPKFGNYM 148

Query: 121 ---------------------------------------------------------KFD 180
                                                                    +FD
Sbjct: 149 DFQQTFISMRLDESHVNNNPEPEDLGQQFHQADAENITLFEYHGSFQTNNETYDRFERFD 208

Query: 181 IEDDEDTQPNFASVDQTKIPDTFGPSPPQDKHQEGP-------PDAEVQDQHLERDVIQQ 240
           IE D++TQ N    +  +IP T  PSPP  +H + P       P  + Q ++  RD   +
Sbjct: 209 IEGDDETQMNSNPREGAEIPTTLIPSPP--RHHDIPEGVNPTSPQRQEQQEN-RRDGFAE 268

Query: 241 AYESKEL-------RQRTGAMSSMKIAT-LMDLPPVVLSGRLFTDG-------------- 300
             E + +       R +     + K AT  MD    +++G ++                 
Sbjct: 269 QMEEQNIPDKEEHDRPQPAKKRARKTATSAMDYEQTIIAGHVYQSWLQDTSDILCRGEKR 328

Query: 301 ------------------------SREVYYPAPLLELWMKSIRDPPDSPSVLMR------ 360
                                    ++  YP  L +LW K+ +    S S          
Sbjct: 329 KVRGTIRPDMESFKRANMPPTQLFEKDSSYPPQLYQLWSKNTQVLQTSSSESRHPDLRAE 388

Query: 361 -----IMKAYENHY-------SGVGSQSFGASIEKLRTKPVNDDIHAEILLEELR--PDF 417
                + +   NH+       S   SQ+  +  E LRT         E ++   R  P+ 
Sbjct: 389 QSPGFVQERMHNHHQTDHHERSDTSSQNLDSPAEILRTVRTGKGASVESMMAGSRASPET 448

[Close]

BLAST of Cp4.1LG01g11510 vs. ExPASy Swiss-Prot
Match: Q9FQ19 (Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana OX=3702 GN=SYN3 PE=2 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-06
Identity = 34/105 (32.38%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 2   AATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDVT 61
           AA +H ++ + +   +NI    + I+ P VP+ALR S  L+ GVV +Y +KV  LY D  
Sbjct: 20  AAHVHQRLKKSQYTSINIPDTVDNIMFPEVPLALRTSSHLLVGVVRIYSKKVDYLYNDWN 79

Query: 62  RLLVEINEAW----------KVKAAPEPTVIPKGKSVAKFDIEDD 97
            L   + +A+            +A PE   +P+  ++ +FD+EDD
Sbjct: 80  LLNTWVAKAFVSTQVNLPEDARQAPPESVTLPQALNLDEFDLEDD 124

[Close]

BLAST of Cp4.1LG01g11510 vs. ExPASy Swiss-Prot
Match: Q8W1Y0 (Sister chromatid cohesion 1 protein 4 OS=Arabidopsis thaliana OX=3702 GN=SYN4 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 4.2e-05
Identity = 36/129 (27.91%), Postives = 67/129 (51.94%), Query Frame = 0


Query: 1   MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV 60
           +AA +  K+ + ++   +I    + IL P  P+ALRLS  L+ GVV +Y RKV  L++D 
Sbjct: 19  IAAHLERKLRKNQVADTDIGVSVDSILFPEAPIALRLSSHLLLGVVRIYSRKVNYLFDDC 78

Query: 61  TRLLVEINEAWKVKAAPEP----------TVIPKGKSVAKFDIEDDEDTQPNF-----AS 115
           +  L+++ +A++  A   P            +P+   +  F++ D+E  Q N+     ++
Sbjct: 79  SEALLKVKQAFRSAAVDLPPEESTAPYHSITLPETFDLDDFELPDNEIFQGNYVDHHVST 138

[Close]

BLAST of Cp4.1LG01g11510 vs. NCBI nr
Match: XP_023552287.1 (sister chromatid cohesion 1 protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 721 bits (1860), Expect = 7.16e-257
Identity = 411/579 (70.98%), Postives = 413/579 (71.33%), Query Frame = 0


Query: 1   MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV 60
           MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV
Sbjct: 19  MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV 78

Query: 61  TRLLVEINEAWKVKAAPEPTVIPKGKSVAK------------------------------ 120
           TRLLVEINEAWKVKAAPEPTVIPKGKSVAK                              
Sbjct: 79  TRLLVEINEAWKVKAAPEPTVIPKGKSVAKKEAVTRPKKDPKDVGDHEAQSINFSYNTSP 138

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 139 MKFQQTAFFTMRLDSVDEPYIHEKTVEDDASHNFHQTDAENITLLERFDMYQSNTNTFNR 198

Query: 181 ---FDIEDDEDTQPNFASVDQTKIPDTFGPSPPQDKHQEGPPDAEVQDQHLERDVIQQAY 240
              FDIEDDEDTQPNFASVDQTKIPDTFGPSPPQDKHQEGPPDAEVQDQHLERDVIQQAY
Sbjct: 199 FERFDIEDDEDTQPNFASVDQTKIPDTFGPSPPQDKHQEGPPDAEVQDQHLERDVIQQAY 258

Query: 241 ESKELRQ-------------------------------------------------RTGA 300
           ESKELRQ                                                 RTGA
Sbjct: 259 ESKELRQEEQVAIKRKTKRTAAFLMDYEKTIIPGHIYQSWLKDVSDLISRRGKKRKRTGA 318

Query: 301 MSSMKIATLMDLPPVVLSGRLFTDGSREVYYPAPLLELWMKSIRDPPDSPSV-------- 360
           MSSMKIATLMDLPPVVLSGRLFTDGSREVYYPAPLLELWMKSIRDPPDSPSV        
Sbjct: 319 MSSMKIATLMDLPPVVLSGRLFTDGSREVYYPAPLLELWMKSIRDPPDSPSVRNSAPLPP 378

Query: 361 ---LMRIMK----------AYENHYSGVGSQSFGASIEKLRTKPVNDDIHAEILLEELRP 416
              L  + +          AYENHYSGVGSQSFGASIEKLRTKPVNDDIHAEILLEELRP
Sbjct: 379 EPSLSSLPERVNFPDHMDFAYENHYSGVGSQSFGASIEKLRTKPVNDDIHAEILLEELRP 438

[Close]

BLAST of Cp4.1LG01g11510 vs. NCBI nr
Match: XP_022957007.1 (sister chromatid cohesion 1 protein 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 701 bits (1810), Expect = 2.85e-249
Identity = 403/579 (69.60%), Postives = 407/579 (70.29%), Query Frame = 0


Query: 1   MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV 60
           MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV
Sbjct: 19  MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV 78

Query: 61  TRLLVEINEAWKVKAAPEPTVIPKGKSVAK------------------------------ 120
           TRLLVEINEAWKVKAAPEPTVIPKGKSVAK                              
Sbjct: 79  TRLLVEINEAWKVKAAPEPTVIPKGKSVAKKEAVTRPKKDPKDVGDHEAQSINFSYNTSP 138

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 139 MKFQQTAFFTMRLDSVDEPYIHEKTVEDDASHNFHQTDAENITLLERFDMYQSNTNAFNR 198

Query: 181 ---FDIEDDEDTQPNFASVDQTKIPDTFGPSPPQDKHQEGPPDAEVQDQHLERDVIQQAY 240
              FDIEDDEDTQPNFASVDQTKIPDTFG SPPQDK+QEGPPDAEVQDQHLERDVIQQAY
Sbjct: 199 FERFDIEDDEDTQPNFASVDQTKIPDTFGTSPPQDKYQEGPPDAEVQDQHLERDVIQQAY 258

Query: 241 ESKELRQ-------------------------------------------------RTGA 300
            SKE RQ                                                 RTGA
Sbjct: 259 VSKEHRQEEQVAIKRKTKRTAAFLMDYEKTIIPGHIYQSWLKDVSDLISRRGKKRKRTGA 318

Query: 301 MSSMKIATLMDLPPVVLSGRLFTDGSREVYYPAPLLELWMKSIRDPPDSPSV-------- 360
           MSSMKIATLMDLPPVVL GRLFTDGSREVYYPAPLLELWMKSIRDPPDSPSV        
Sbjct: 319 MSSMKIATLMDLPPVVLCGRLFTDGSREVYYPAPLLELWMKSIRDPPDSPSVRNSAPLPP 378

Query: 361 ---LMRIMK----------AYENHYSGVGSQSFGASIEKLRTKPVNDDIHAEILLEELRP 416
              L  + +          AYEN YSGVGSQSFGASIEKLRTKPVNDDIHAEILLEELRP
Sbjct: 379 EPSLSSLPERVNFPDHMDFAYENRYSGVGSQSFGASIEKLRTKPVNDDIHAEILLEELRP 438

[Close]

BLAST of Cp4.1LG01g11510 vs. NCBI nr
Match: XP_022985848.1 (sister chromatid cohesion 1 protein 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 693 bits (1789), Expect = 4.44e-246
Identity = 400/579 (69.08%), Postives = 407/579 (70.29%), Query Frame = 0


Query: 1   MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV 60
           MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV
Sbjct: 19  MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV 78

Query: 61  TRLLVEINEAWKVKAAPEPTVIPKGKSVAK------------------------------ 120
           TRLLVEINEAWKVKAAPE TVIPKGKSVAK                              
Sbjct: 79  TRLLVEINEAWKVKAAPEATVIPKGKSVAKKEAATRPKKDPKDVGDHEAQSINFSYDTSP 138

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 139 MKFQQTAFFTMRLDSVDEPYIHEKTVEDDASHNFHQTDAENITLLERFDMYQSNTNTFNR 198

Query: 181 ---FDIEDDEDTQPNFASVDQTKIPDTFGPSPPQDKHQEGPPDAEVQDQHLERDVIQQAY 240
              FDIEDDEDTQ NFASVDQTKIPDTFGPSPPQDK+QEG P+AEVQDQHLERDVIQQAY
Sbjct: 199 FERFDIEDDEDTQSNFASVDQTKIPDTFGPSPPQDKYQEGSPEAEVQDQHLERDVIQQAY 258

Query: 241 ESKELRQ-------------------------------------------------RTGA 300
           ESKELRQ                                                 RTGA
Sbjct: 259 ESKELRQVEQVAIKRKTKRTAAFLMDYEKTIIPGHIYQSWLKDVSDLISRRGKKRKRTGA 318

Query: 301 MSSMKIATLMDLPPVVLSGRLFTDGSREVYYPAPLLELWMKSIRDPPDSPSV-------- 360
           MSSMKIATLMDLPPVVLSGRLFTDGSREVYYPAPLLELWMKSIR+PPDSPSV        
Sbjct: 319 MSSMKIATLMDLPPVVLSGRLFTDGSREVYYPAPLLELWMKSIRNPPDSPSVRNSAPLPP 378

Query: 361 ---LMRIMK----------AYENHYSGVGSQSFGASIEKLRTKPVNDDIHAEILLEELRP 416
              L  + +          AYEN YSGVGSQSFGASIEKLRTKPVNDDIHAEILLEELRP
Sbjct: 379 EPSLSSLPERVNFPDHMDFAYENQYSGVGSQSFGASIEKLRTKPVNDDIHAEILLEELRP 438

[Close]

BLAST of Cp4.1LG01g11510 vs. NCBI nr
Match: KAG7031552.1 (Sister chromatid cohesion 1 protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 692 bits (1786), Expect = 2.30e-245
Identity = 404/596 (67.79%), Postives = 407/596 (68.29%), Query Frame = 0


Query: 1   MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV 60
           MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV
Sbjct: 19  MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV 78

Query: 61  TRLLVEINEAWKVKAAPEPTVIPKGKSVAK------------------------------ 120
           TRLLVEINEAWKVKAAPEPTVIPKGKSVAK                              
Sbjct: 79  TRLLVEINEAWKVKAAPEPTVIPKGKSVAKKEAVTRPKKDPKDVGDHEAQSINFSYNTSP 138

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 139 MKFQQTAFFTMVFLRLQRLDSVDEPYIHEKTVEDDASHNFHQTDAENITLLERFDMYQSN 198

Query: 181 ---------FDIEDDEDTQPNFASVDQTKIPDTFGPSPPQDKHQEGPPDAEVQDQHLERD 240
                    FDIEDDEDTQPNFASVDQTKIPDTFGPSPPQ K+QEGPPDAEV DQHLERD
Sbjct: 199 TNAFNRFERFDIEDDEDTQPNFASVDQTKIPDTFGPSPPQGKYQEGPPDAEVGDQHLERD 258

Query: 241 VIQQAYESKELRQ----------------------------------------------- 300
           VIQQAY SKE RQ                                               
Sbjct: 259 VIQQAYVSKEHRQEEQVAIKRKTKRTAAFLMDYEKTIIPGHIYQSWLKDVSDLISRRGKK 318

Query: 301 --RTGAMSSMKIATLMDLPPVVLSGRLFTDGSREVYYPAPLLELWMKSIRDPPDSPSV-- 360
             RTGAMSSMKIATLMDLPPVVL GRLFTDGSREVYYPAPLLELWMKSIRDPPDSPSV  
Sbjct: 319 RKRTGAMSSMKIATLMDLPPVVLCGRLFTDGSREVYYPAPLLELWMKSIRDPPDSPSVRN 378

Query: 361 ---------LMRIMK----------AYENHYSGVGSQSFGASIEKLRTKPVNDDIHAEIL 416
                    L  + +          AYENHYSGVGSQSFGASIEKLRTKPVNDDIHAEIL
Sbjct: 379 SAPLPPEPSLSSLPERVNFPDHMDFAYENHYSGVGSQSFGASIEKLRTKPVNDDIHAEIL 438

[Close]

BLAST of Cp4.1LG01g11510 vs. NCBI nr
Match: KAG6600915.1 (putative methyltransferase PMT23, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 696 bits (1796), Expect = 7.70e-238
Identity = 405/604 (67.05%), Postives = 408/604 (67.55%), Query Frame = 0


Query: 1    MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV 60
            MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV
Sbjct: 678  MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV 737

Query: 61   TRLLVEINEAWKVKAAPEPTVIPKGKSVAK------------------------------ 120
            TRLLVEINEAWKVKAAPEPTVIPKGKSVAK                              
Sbjct: 738  TRLLVEINEAWKVKAAPEPTVIPKGKSVAKKEAVTRPKKDPKDVGDHEAQSINFSYNTSP 797

Query: 121  ------------------------------------------------------------ 180
                                                                        
Sbjct: 798  MKLQQTAFFTMIDAYRITLDTGFEGNWFILVFLRLQRLDSVDEPYIHEKTVEDDASHNFH 857

Query: 181  ----------------------------FDIEDDEDTQPNFASVDQTKIPDTFGPSPPQD 240
                                        FDIEDDEDTQPNFASVDQTKIPDTFGPSPPQ 
Sbjct: 858  QTDAENITLLERFDMYQSNTNAFNRFERFDIEDDEDTQPNFASVDQTKIPDTFGPSPPQG 917

Query: 241  KHQEGPPDAEVQDQHLERDVIQQAYESKELRQ---------------------------- 300
            K+QEGPPDAEV DQHLERDVIQQAY SKE RQ                            
Sbjct: 918  KYQEGPPDAEVGDQHLERDVIQQAYVSKEHRQEEQVAIKRKTKRTAAFLMDYEKTIIPGH 977

Query: 301  ---------------------RTGAMSSMKIATLMDLPPVVLSGRLFTDGSREVYYPAPL 360
                                 RTGAMSSMKIATLMDLPPVVL GRLFTDGSREVYYPAPL
Sbjct: 978  IYQSWLKDVSDLISRRGKKRKRTGAMSSMKIATLMDLPPVVLCGRLFTDGSREVYYPAPL 1037

Query: 361  LELWMKSIRDPPDSPSV-----------LMRIMK----------AYENHYSGVGSQSFGA 416
            LELWMKSIRDPPDSPSV           L  + +          AYENHYSGVGSQSFGA
Sbjct: 1038 LELWMKSIRDPPDSPSVRNSAPLPPEPSLSSLPERVNFPDHTDFAYENHYSGVGSQSFGA 1097

[Close]

BLAST of Cp4.1LG01g11510 vs. ExPASy TrEMBL
Match: A0A6J1GXZ1 (sister chromatid cohesion 1 protein 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458512 PE=3 SV=1)

HSP 1 Score: 701 bits (1810), Expect = 1.38e-249
Identity = 403/579 (69.60%), Postives = 407/579 (70.29%), Query Frame = 0


Query: 1   MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV 60
           MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV
Sbjct: 19  MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV 78

Query: 61  TRLLVEINEAWKVKAAPEPTVIPKGKSVAK------------------------------ 120
           TRLLVEINEAWKVKAAPEPTVIPKGKSVAK                              
Sbjct: 79  TRLLVEINEAWKVKAAPEPTVIPKGKSVAKKEAVTRPKKDPKDVGDHEAQSINFSYNTSP 138

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 139 MKFQQTAFFTMRLDSVDEPYIHEKTVEDDASHNFHQTDAENITLLERFDMYQSNTNAFNR 198

Query: 181 ---FDIEDDEDTQPNFASVDQTKIPDTFGPSPPQDKHQEGPPDAEVQDQHLERDVIQQAY 240
              FDIEDDEDTQPNFASVDQTKIPDTFG SPPQDK+QEGPPDAEVQDQHLERDVIQQAY
Sbjct: 199 FERFDIEDDEDTQPNFASVDQTKIPDTFGTSPPQDKYQEGPPDAEVQDQHLERDVIQQAY 258

Query: 241 ESKELRQ-------------------------------------------------RTGA 300
            SKE RQ                                                 RTGA
Sbjct: 259 VSKEHRQEEQVAIKRKTKRTAAFLMDYEKTIIPGHIYQSWLKDVSDLISRRGKKRKRTGA 318

Query: 301 MSSMKIATLMDLPPVVLSGRLFTDGSREVYYPAPLLELWMKSIRDPPDSPSV-------- 360
           MSSMKIATLMDLPPVVL GRLFTDGSREVYYPAPLLELWMKSIRDPPDSPSV        
Sbjct: 319 MSSMKIATLMDLPPVVLCGRLFTDGSREVYYPAPLLELWMKSIRDPPDSPSVRNSAPLPP 378

Query: 361 ---LMRIMK----------AYENHYSGVGSQSFGASIEKLRTKPVNDDIHAEILLEELRP 416
              L  + +          AYEN YSGVGSQSFGASIEKLRTKPVNDDIHAEILLEELRP
Sbjct: 379 EPSLSSLPERVNFPDHMDFAYENRYSGVGSQSFGASIEKLRTKPVNDDIHAEILLEELRP 438

[Close]

BLAST of Cp4.1LG01g11510 vs. ExPASy TrEMBL
Match: A0A6J1JET8 (sister chromatid cohesion 1 protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483772 PE=3 SV=1)

HSP 1 Score: 693 bits (1789), Expect = 2.15e-246
Identity = 400/579 (69.08%), Postives = 407/579 (70.29%), Query Frame = 0


Query: 1   MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV 60
           MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV
Sbjct: 19  MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV 78

Query: 61  TRLLVEINEAWKVKAAPEPTVIPKGKSVAK------------------------------ 120
           TRLLVEINEAWKVKAAPE TVIPKGKSVAK                              
Sbjct: 79  TRLLVEINEAWKVKAAPEATVIPKGKSVAKKEAATRPKKDPKDVGDHEAQSINFSYDTSP 138

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 139 MKFQQTAFFTMRLDSVDEPYIHEKTVEDDASHNFHQTDAENITLLERFDMYQSNTNTFNR 198

Query: 181 ---FDIEDDEDTQPNFASVDQTKIPDTFGPSPPQDKHQEGPPDAEVQDQHLERDVIQQAY 240
              FDIEDDEDTQ NFASVDQTKIPDTFGPSPPQDK+QEG P+AEVQDQHLERDVIQQAY
Sbjct: 199 FERFDIEDDEDTQSNFASVDQTKIPDTFGPSPPQDKYQEGSPEAEVQDQHLERDVIQQAY 258

Query: 241 ESKELRQ-------------------------------------------------RTGA 300
           ESKELRQ                                                 RTGA
Sbjct: 259 ESKELRQVEQVAIKRKTKRTAAFLMDYEKTIIPGHIYQSWLKDVSDLISRRGKKRKRTGA 318

Query: 301 MSSMKIATLMDLPPVVLSGRLFTDGSREVYYPAPLLELWMKSIRDPPDSPSV-------- 360
           MSSMKIATLMDLPPVVLSGRLFTDGSREVYYPAPLLELWMKSIR+PPDSPSV        
Sbjct: 319 MSSMKIATLMDLPPVVLSGRLFTDGSREVYYPAPLLELWMKSIRNPPDSPSVRNSAPLPP 378

Query: 361 ---LMRIMK----------AYENHYSGVGSQSFGASIEKLRTKPVNDDIHAEILLEELRP 416
              L  + +          AYEN YSGVGSQSFGASIEKLRTKPVNDDIHAEILLEELRP
Sbjct: 379 EPSLSSLPERVNFPDHMDFAYENQYSGVGSQSFGASIEKLRTKPVNDDIHAEILLEELRP 438

[Close]

BLAST of Cp4.1LG01g11510 vs. ExPASy TrEMBL
Match: A0A6J1KBX6 (sister chromatid cohesion 1 protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111491896 PE=3 SV=1)

HSP 1 Score: 593 bits (1528), Expect = 9.13e-207
Identity = 352/579 (60.79%), Postives = 374/579 (64.59%), Query Frame = 0


Query: 1   MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV 60
           MAATMHAKINRRKLDKLNII+ICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV
Sbjct: 19  MAATMHAKINRRKLDKLNIIEICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV 78

Query: 61  TRLLVEINEAWKVKAAPEPTVIPKGKSVAK------------------------------ 120
           TRLLVEINEAWKVK   EPTVIPKGKS+AK                              
Sbjct: 79  TRLLVEINEAWKVKTVTEPTVIPKGKSLAKKQAVTRPKKDPRDIGDHESQSINFSRSTSP 138

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 139 MRFQQTAFFTLRLDSVDEPYINDRTMEDDPSQNFHQTDAENITLLEPLDEYQSNTNTFNR 198

Query: 181 ---FDIEDDEDTQPNFASVDQTKIPDTFGPSPPQDKHQEGPPDAEVQDQHLERDVIQQAY 240
              FDIE+DE+TQ NFASVD T+IP     SPP D + EGPPDAEVQDQHLER+V+QQAY
Sbjct: 199 FERFDIEEDEETQLNFASVDHTQIPVIPRSSPPLDNYLEGPPDAEVQDQHLERNVMQQAY 258

Query: 241 ESKELRQ-------------------------------------------------RTGA 300
           E KELRQ                                                 RTGA
Sbjct: 259 EPKELRQVKKVAIKRKTKRTAASQMDYEQTMVPGYIYQSWLQDVSDLVSRRGRKRKRTGA 318

Query: 301 MSSMKIATLMDLPPVVLSGRLFTDGSREVYYPAPLLELWMKSIRDPPDSPSVLMRIMKA- 360
            SSMK+A LMDLPPVVLSGRLF+DG REVYYPAPLLELWMKSIR+P DSPSV    +   
Sbjct: 319 RSSMKVANLMDLPPVVLSGRLFSDGGREVYYPAPLLELWMKSIRNPRDSPSVRNSAVLPP 378

Query: 361 --------------------YENHYSGVGSQSFGASIEKLRTKPVNDDIHAEILLEELRP 416
                               +E+H+SGVGSQSFGASIEKLRTKPVN+DI AEILL ELRP
Sbjct: 379 EPSLSSQPERVNFPDHMDFPFEDHHSGVGSQSFGASIEKLRTKPVNEDIQAEILLGELRP 438

[Close]

BLAST of Cp4.1LG01g11510 vs. ExPASy TrEMBL
Match: A0A6J1FMB0 (sister chromatid cohesion 1 protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111447108 PE=3 SV=1)

HSP 1 Score: 592 bits (1527), Expect = 1.29e-206
Identity = 353/579 (60.97%), Postives = 373/579 (64.42%), Query Frame = 0


Query: 1   MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV 60
           MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV
Sbjct: 19  MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV 78

Query: 61  TRLLVEINEAWKVKAAPEPTVIPKGKSVAK------------------------------ 120
           TRLLVEINEAWKVK   EPTVIPKGKS+AK                              
Sbjct: 79  TRLLVEINEAWKVKTVTEPTVIPKGKSLAKKQAVTRPKKDPRDIGDHESQSINFSRSTSP 138

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 139 MRFQQTAFFTLRLDSVDEPYINDRTMEDDPSQNFHQTDAENITLLERLDEYQSNTNTFNR 198

Query: 181 ---FDIEDDEDTQPNFASVDQTKIPDTFGPSPPQDKHQEGPPDAEVQDQHLERDVIQQAY 240
              FDIE+DE+TQ NFASVDQT+IP     SPP D + EGPPDAEVQDQHLER+V+QQAY
Sbjct: 199 FERFDIEEDEETQLNFASVDQTQIPVIPRSSPPLDNYLEGPPDAEVQDQHLERNVMQQAY 258

Query: 241 ESKELRQ-------------------------------------------------RTGA 300
           E KELRQ                                                 RTGA
Sbjct: 259 EPKELRQVKKVAIKRKTKRTAASQMDYEQTMVPGYIYQSWLQDVSDLVSRRGRKRKRTGA 318

Query: 301 MSSMKIATLMDLPPVVLSGRLFTDGSREVYYPAPLLELWMKSIRDPPDSPSVLMRIMKA- 360
            SSMK+A LMDLPPVVLSGRLF+DG REVYYPAPLLELWMKSIR+P DSPSV    +   
Sbjct: 319 RSSMKVANLMDLPPVVLSGRLFSDGGREVYYPAPLLELWMKSIRNPRDSPSVRNSAVLPP 378

Query: 361 --------------------YENHYSGVGSQSFGASIEKLRTKPVNDDIHAEILLEELRP 416
                               +E+H+SGVGSQSFGASIEKLRTKPVN+DI AEILL ELRP
Sbjct: 379 EPSLSSQPERVNFPDHMDFPFEDHHSGVGSQSFGASIEKLRTKPVNEDIQAEILLGELRP 438

[Close]

BLAST of Cp4.1LG01g11510 vs. ExPASy TrEMBL
Match: A0A6J1GYZ1 (sister chromatid cohesion 1 protein 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111458512 PE=4 SV=1)

HSP 1 Score: 583 bits (1503), Expect = 4.64e-204
Identity = 339/515 (65.83%), Postives = 343/515 (66.60%), Query Frame = 0


Query: 65  VEINEAWKVKAAPEPTVIPKGKSVAK---------------------------------- 124
           VEINEAWKVKAAPEPTVIPKGKSVAK                                  
Sbjct: 10  VEINEAWKVKAAPEPTVIPKGKSVAKKEAVTRPKKDPKDVGDHEAQSINFSYNTSPMKFQ 69

Query: 125 -----------------------------------------------------------F 184
                                                                      F
Sbjct: 70  QTAFFTMRLDSVDEPYIHEKTVEDDASHNFHQTDAENITLLERFDMYQSNTNAFNRFERF 129

Query: 185 DIEDDEDTQPNFASVDQTKIPDTFGPSPPQDKHQEGPPDAEVQDQHLERDVIQQAYESKE 244
           DIEDDEDTQPNFASVDQTKIPDTFG SPPQDK+QEGPPDAEVQDQHLERDVIQQAY SKE
Sbjct: 130 DIEDDEDTQPNFASVDQTKIPDTFGTSPPQDKYQEGPPDAEVQDQHLERDVIQQAYVSKE 189

Query: 245 LRQ-------------------------------------------------RTGAMSSM 304
            RQ                                                 RTGAMSSM
Sbjct: 190 HRQEEQVAIKRKTKRTAAFLMDYEKTIIPGHIYQSWLKDVSDLISRRGKKRKRTGAMSSM 249

Query: 305 KIATLMDLPPVVLSGRLFTDGSREVYYPAPLLELWMKSIRDPPDSPSV-----------L 364
           KIATLMDLPPVVL GRLFTDGSREVYYPAPLLELWMKSIRDPPDSPSV           L
Sbjct: 250 KIATLMDLPPVVLCGRLFTDGSREVYYPAPLLELWMKSIRDPPDSPSVRNSAPLPPEPSL 309

Query: 365 MRIMK----------AYENHYSGVGSQSFGASIEKLRTKPVNDDIHAEILLEELRPDFMN 416
             + +          AYEN YSGVGSQSFGASIEKLRTKPVNDDIHAEILLEELRPDF N
Sbjct: 310 SSLPERVNFPDHMDFAYENRYSGVGSQSFGASIEKLRTKPVNDDIHAEILLEELRPDFRN 369

[Close]

BLAST of Cp4.1LG01g11510 vs. TAIR 10
Match: AT5G05490.1 (Rad21/Rec8-like family protein )

HSP 1 Score: 218.4 bits (555), Expect = 1.1e-56
Identity = 192/584 (32.88%), Postives = 262/584 (44.86%), Query Frame = 0


Query: 1   MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV 60
           MAAT+HAKINR+KLDKL+II+ICEEILNPSVPMALRLSGILMGGVVIVYERKVK+L++DV
Sbjct: 29  MAATLHAKINRKKLDKLDIIQICEEILNPSVPMALRLSGILMGGVVIVYERKVKLLFDDV 88

Query: 61  TRLLVEINEAWKVKAAPEPTVIPKGKSVA------------------------------- 120
            R LVEIN AW+ K+ P+PT++PKGK+ A                               
Sbjct: 89  NRFLVEINGAWRTKSVPDPTLLPKGKTHARKEAVTLPENEEADFGDFEQTRNVPKFGNYM 148

Query: 121 ---------------------------------------------------------KFD 180
                                                                    +FD
Sbjct: 149 DFQQTFISMRLDESHVNNNPEPEDLGQQFHQADAENITLFEYHGSFQTNNETYDRFERFD 208

Query: 181 IEDDEDTQPNFASVDQTKIPDTFGPSPPQDKHQEGP-------PDAEVQDQHLERDVIQQ 240
           IE D++TQ N    +  +IP T  PSPP  +H + P       P  + Q ++  RD   +
Sbjct: 209 IEGDDETQMNSNPREGAEIPTTLIPSPP--RHHDIPEGVNPTSPQRQEQQEN-RRDGFAE 268

Query: 241 AYESKEL-------RQRTGAMSSMKIAT-LMDLPPVVLSGRLFTDG-------------- 300
             E + +       R +     + K AT  MD    +++G ++                 
Sbjct: 269 QMEEQNIPDKEEHDRPQPAKKRARKTATSAMDYEQTIIAGHVYQSWLQDTSDILCRGEKR 328

Query: 301 ------------------------SREVYYPAPLLELWMKSIRDPPDSPSVLMR------ 360
                                    ++  YP  L +LW K+ +    S S          
Sbjct: 329 KVRGTIRPDMESFKRANMPPTQLFEKDSSYPPQLYQLWSKNTQVLQTSSSESRHPDLRAE 388

Query: 361 -----IMKAYENHY-------SGVGSQSFGASIEKLRTKPVNDDIHAEILLEELR--PDF 417
                + +   NH+       S   SQ+  +  E LRT         E ++   R  P+ 
Sbjct: 389 QSPGFVQERMHNHHQTDHHERSDTSSQNLDSPAEILRTVRTGKGASVESMMAGSRASPET 448

[Close]

BLAST of Cp4.1LG01g11510 vs. TAIR 10
Match: AT5G05490.2 (Rad21/Rec8-like family protein )

HSP 1 Score: 218.4 bits (555), Expect = 1.1e-56
Identity = 192/584 (32.88%), Postives = 262/584 (44.86%), Query Frame = 0


Query: 1   MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV 60
           MAAT+HAKINR+KLDKL+II+ICEEILNPSVPMALRLSGILMGGVVIVYERKVK+L++DV
Sbjct: 19  MAATLHAKINRKKLDKLDIIQICEEILNPSVPMALRLSGILMGGVVIVYERKVKLLFDDV 78

Query: 61  TRLLVEINEAWKVKAAPEPTVIPKGKSVA------------------------------- 120
            R LVEIN AW+ K+ P+PT++PKGK+ A                               
Sbjct: 79  NRFLVEINGAWRTKSVPDPTLLPKGKTHARKEAVTLPENEEADFGDFEQTRNVPKFGNYM 138

Query: 121 ---------------------------------------------------------KFD 180
                                                                    +FD
Sbjct: 139 DFQQTFISMRLDESHVNNNPEPEDLGQQFHQADAENITLFEYHGSFQTNNETYDRFERFD 198

Query: 181 IEDDEDTQPNFASVDQTKIPDTFGPSPPQDKHQEGP-------PDAEVQDQHLERDVIQQ 240
           IE D++TQ N    +  +IP T  PSPP  +H + P       P  + Q ++  RD   +
Sbjct: 199 IEGDDETQMNSNPREGAEIPTTLIPSPP--RHHDIPEGVNPTSPQRQEQQEN-RRDGFAE 258

Query: 241 AYESKEL-------RQRTGAMSSMKIAT-LMDLPPVVLSGRLFTDG-------------- 300
             E + +       R +     + K AT  MD    +++G ++                 
Sbjct: 259 QMEEQNIPDKEEHDRPQPAKKRARKTATSAMDYEQTIIAGHVYQSWLQDTSDILCRGEKR 318

Query: 301 ------------------------SREVYYPAPLLELWMKSIRDPPDSPSVLMR------ 360
                                    ++  YP  L +LW K+ +    S S          
Sbjct: 319 KVRGTIRPDMESFKRANMPPTQLFEKDSSYPPQLYQLWSKNTQVLQTSSSESRHPDLRAE 378

Query: 361 -----IMKAYENHY-------SGVGSQSFGASIEKLRTKPVNDDIHAEILLEELR--PDF 417
                + +   NH+       S   SQ+  +  E LRT         E ++   R  P+ 
Sbjct: 379 QSPGFVQERMHNHHQTDHHERSDTSSQNLDSPAEILRTVRTGKGASVESMMAGSRASPET 438

[Close]

BLAST of Cp4.1LG01g11510 vs. TAIR 10
Match: AT3G59550.1 (Rad21/Rec8-like family protein )

HSP 1 Score: 55.8 bits (133), Expect = 9.3e-08
Identity = 34/105 (32.38%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 2   AATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDVT 61
           AA +H ++ + +   +NI    + I+ P VP+ALR S  L+ GVV +Y +KV  LY D  
Sbjct: 20  AAHVHQRLKKSQYTSINIPDTVDNIMFPEVPLALRTSSHLLVGVVRIYSKKVDYLYNDWN 79

Query: 62  RLLVEINEAW----------KVKAAPEPTVIPKGKSVAKFDIEDD 97
            L   + +A+            +A PE   +P+  ++ +FD+EDD
Sbjct: 80  LLNTWVAKAFVSTQVNLPEDARQAPPESVTLPQALNLDEFDLEDD 124

[Close]

BLAST of Cp4.1LG01g11510 vs. TAIR 10
Match: AT5G16270.1 (sister chromatid cohesion 1 protein 4 )

HSP 1 Score: 50.8 bits (120), Expect = 3.0e-06
Identity = 36/129 (27.91%), Postives = 67/129 (51.94%), Query Frame = 0


Query: 1   MAATMHAKINRRKLDKLNIIKICEEILNPSVPMALRLSGILMGGVVIVYERKVKILYEDV 60
           +AA +  K+ + ++   +I    + IL P  P+ALRLS  L+ GVV +Y RKV  L++D 
Sbjct: 19  IAAHLERKLRKNQVADTDIGVSVDSILFPEAPIALRLSSHLLLGVVRIYSRKVNYLFDDC 78

Query: 61  TRLLVEINEAWKVKAAPEP----------TVIPKGKSVAKFDIEDDEDTQPNF-----AS 115
           +  L+++ +A++  A   P            +P+   +  F++ D+E  Q N+     ++
Sbjct: 79  SEALLKVKQAFRSAAVDLPPEESTAPYHSITLPETFDLDDFELPDNEIFQGNYVDHHVST 138

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g11510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7T7	1.5e-55	32.88	Sister chromatid cohesion 1 protein 1 OS=Arabidopsis thaliana OX=3702 GN=SYN1 PE...	[more]
Q9FQ19	1.3e-06	32.38	Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana OX=3702 GN=SYN3 PE...	[more]
Q8W1Y0	4.2e-05	27.91	Sister chromatid cohesion 1 protein 4 OS=Arabidopsis thaliana OX=3702 GN=SYN4 PE...	[more]

BLAST of Cp4.1LG01g11510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023552287.1	7.16e-257	70.98	sister chromatid cohesion 1 protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022957007.1	2.85e-249	69.60	sister chromatid cohesion 1 protein 1-like isoform X1 [Cucurbita moschata]	[more]
XP_022985848.1	4.44e-246	69.08	sister chromatid cohesion 1 protein 1-like isoform X1 [Cucurbita maxima]	[more]
KAG7031552.1	2.30e-245	67.79	Sister chromatid cohesion 1 protein 1, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAG6600915.1	7.70e-238	67.05	putative methyltransferase PMT23, partial [Cucurbita argyrosperma subsp. sororia...	[more]

BLAST of Cp4.1LG01g11510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GXZ1	1.38e-249	69.60	sister chromatid cohesion 1 protein 1-like isoform X1 OS=Cucurbita moschata OX=3...	[more]
A0A6J1JET8	2.15e-246	69.08	sister chromatid cohesion 1 protein 1-like isoform X1 OS=Cucurbita maxima OX=366...	[more]
A0A6J1KBX6	9.13e-207	60.79	sister chromatid cohesion 1 protein 1 OS=Cucurbita maxima OX=3661 GN=LOC11149189...	[more]
A0A6J1FMB0	1.29e-206	60.97	sister chromatid cohesion 1 protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111447...	[more]
A0A6J1GYZ1	4.64e-204	65.83	sister chromatid cohesion 1 protein 1-like isoform X2 OS=Cucurbita moschata OX=3...	[more]

BLAST of Cp4.1LG01g11510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05490.1	1.1e-56	32.88	Rad21/Rec8-like family protein	[more]
AT5G05490.2	1.1e-56	32.88	Rad21/Rec8-like family protein	[more]
AT3G59550.1	9.3e-08	32.38	Rad21/Rec8-like family protein	[more]
AT5G16270.1	3.0e-06	27.91	sister chromatid cohesion 1 protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006910	Rad21/Rec8-like protein, N-terminal	PFAM	PF04825	Rad21_Rec8_N	coord: 1..76 e-value: 1.0E-24 score: 86.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 275..322
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 275..340
None	No IPR available	PANTHER	PTHR12585:SF64	SISTER CHROMATID COHESION 1 PROTEIN 1	coord: 90..416 coord: 1..91
IPR039781	Rad21/Rec8-like protein	PANTHER	PTHR12585	SCC1 / RAD21 FAMILY MEMBER	coord: 90..416 coord: 1..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g11510.1	Cp4.1LG01g11510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006631	fatty acid metabolic process
biological_process	GO:0007062	sister chromatid cohesion
cellular_component	GO:0008278	cohesin complex
molecular_function	GO:0043168	anion binding
molecular_function	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors
molecular_function	GO:0005515	protein binding