Cp4.1LG01g10840 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g10840
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Expansin
Location	Cp4.1LG01: 6418949 .. 6420450 (+)
RNA-Seq Expression	Cp4.1LG01g10840
Synteny	Cp4.1LG01g10840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTACCTTCTTCCTTCATACTCCTTTGTCTTTAATCTACCGCATTGAATTGTTGATTCGAATTTCTGATTGGAAGCAAAATCTTCTCATATCTCTTCACTGGAATTTTATCGAGAAACCTAGCTAGTTCTGAATCTGCGAATGATCGCTGGTTAATCGAGAATTGTGTGTGTTTGATTTTTTCAATCGGACTTTGTCTGAGATACCTAGATGTGAAGAATGATCGTTTGAATTGAATTGATTACGAGAGTATTTGTGTATTTGATTCAAATCTTGCGATTGCCTAATTATGAACAAACGGTTGAATTGATGTGAGAAAGAATTGTGTGCTCGATTGATTGATTCAGGAGGTGCTTGCGGTTATGGAAACTTGTTCGACGATGGCTACGGTGTGAACACGGCGGCGCTGAGCACTGCTCTGTTCAACAACGGTTTGAGCTGCGGAGCTTGTTTCGAGATTAAGTGCGTTGACGATCCACAGTGGTGCCATCCCGGGAATCCGTCAATTATCATAACGGCCACGAACTTTTGCCCTCCGAACTTCGCGATTCCGAGCGACAATGGAGGGTGGTGCAACCCTCCCCGTCCTCATTTCGACCTCTCCATGCCTATGTTCCTCAAGCTCGCCCAGTACAAAGCCGGAATTATTCCCGTCACTTATCGCAGGTCAAAACAAAAACGCCCTTTTCTTTCCTCTTGGGATATATTACTAATTTACTATCAATCCAGAGTTTAATTAGACCTAAACAAATGAAAATTTCATGAATTATGTTAGTTTATTAGTTTTGAAAAACTAGATTGAGCTAAATCAAGCTAAATTAATCTTAAAATATATAGTTTCACTGTACCCAAGGGGCAATGGGTCAATGACAACGTAGCTCAATTATAGGAAAGAAAATTAGAAATGGTATTAGCTTGGGAACTTCTATTAGTACGTTTGAATTTATAAATATGTAGTGTTTGTGAGCACTGAAACATTGATTTTGTGGGTGGACAGGGTGGGTTGCGTGAAAAAAGGAGGAATAAGATTCAGTATGAACGGCTTCCAGTACTTCAACTTGGTGCTCATCTCAAACGTGGGAGGCGCAGGGGACGTGGTGGAGGTGAGCGTGAAAGGCAGCAGCAACACCAAATGGATGAGCATGAGACGCAACTGGGGCCAGAACTGGCAACCCGACACCGTCTTGGTTGGTCAGTCGCTGTCCTTCAGAGTCACAACCAGCGACCGTCGCACCGTCACGTCCTGGAACGTCGTCCCCTCTAACTGGCAGTTTGGGCAGACGTTCTCCGGTGACAATTTCAGCGTCTAATTTTGAGAATGGAATTTGATTCTTTTCATTCAAATATGGGGGAATAGGGTTGTGTTAGTGAGCGTAGTTTTGGGAGGGAAGTTTTTGTTTTGGGAAGATGGAAATGATACCAAGTGATACTGTAGGAAGAATAAAAGAGTTGGGTATTTTTTATGAAAGAAGAGGAAGGCATGGACTCGGTCTATTTTAA

mRNA sequence

ATGGGAGGTGCTTGCGGTTATGGAAACTTGTTCGACGATGGCTACGGTGTGAACACGGCGGCGCTGAGCACTGCTCTGTTCAACAACGGTTTGAGCTGCGGAGCTTGTTTCGAGATTAAGTGCGTTGACGATCCACAGTGGTGCCATCCCGGGAATCCGTCAATTATCATAACGGCCACGAACTTTTGCCCTCCGAACTTCGCGATTCCGAGCGACAATGGAGGGTGGTGCAACCCTCCCCGTCCTCATTTCGACCTCTCCATGCCTATGTTCCTCAAGCTCGCCCAGTACAAAGCCGGAATTATTCCCGTCACTTATCGCAGAAGAGGAAGGCATGGACTCGGTCTATTTTAA

Coding sequence (CDS)

ATGGGAGGTGCTTGCGGTTATGGAAACTTGTTCGACGATGGCTACGGTGTGAACACGGCGGCGCTGAGCACTGCTCTGTTCAACAACGGTTTGAGCTGCGGAGCTTGTTTCGAGATTAAGTGCGTTGACGATCCACAGTGGTGCCATCCCGGGAATCCGTCAATTATCATAACGGCCACGAACTTTTGCCCTCCGAACTTCGCGATTCCGAGCGACAATGGAGGGTGGTGCAACCCTCCCCGTCCTCATTTCGACCTCTCCATGCCTATGTTCCTCAAGCTCGCCCAGTACAAAGCCGGAATTATTCCCGTCACTTATCGCAGAAGAGGAAGGCATGGACTCGGTCTATTTTAA

Protein sequence

MGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITATNFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRRRGRHGLGLF

Homology

[Close]

BLAST of Cp4.1LG01g10840 vs. ExPASy Swiss-Prot
Match: Q38865 (Expansin-A6 OS=Arabidopsis thaliana OX=3702 GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 213.8 bits (543), Expect = 1.1e-54
Identity = 89/108 (82.41%), Postives = 100/108 (92.59%), Query Frame = 0


Query: 1   MGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT 60
           MGGACGYGNL+  GYGVNTAALSTALFNNG SCGACFE+KC  DP+WCH G+PSI ITAT
Sbjct: 48  MGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITAT 107

Query: 61  NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRR 109
           NFCPPNFA PSDNGGWCNPPRPHFDL+MPMFLK+A+Y+AGI+PV++RR
Sbjct: 108 NFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRR 155

[Close]

BLAST of Cp4.1LG01g10840 vs. ExPASy Swiss-Prot
Match: O80932 (Expansin-A3 OS=Arabidopsis thaliana OX=3702 GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 5.3e-54
Identity = 89/108 (82.41%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   MGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT 60
           MGGACGYGNL+  GYGVNTAALSTALFNNG SCGACFEIKC DDP+WC PGNPSI++TAT
Sbjct: 53  MGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCTDDPRWCVPGNPSILVTAT 112

Query: 61  NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRR 109
           NFCPPNFA PSD+GGWCNPPR HFDL+MPMFLK+  Y+AGI+PV+YRR
Sbjct: 113 NFCPPNFAQPSDDGGWCNPPREHFDLAMPMFLKIGLYRAGIVPVSYRR 160

[Close]

BLAST of Cp4.1LG01g10840 vs. ExPASy Swiss-Prot
Match: O48818 (Expansin-A4 OS=Arabidopsis thaliana OX=3702 GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 5.3e-54
Identity = 88/108 (81.48%), Postives = 100/108 (92.59%), Query Frame = 0


Query: 1   MGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT 60
           MGGACGYGNL+  GYG NTAALSTALFNNG+SCGACFE+KC +DPQWCH G+PSI+ITAT
Sbjct: 48  MGGACGYGNLYSQGYGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITAT 107

Query: 61  NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRR 109
           NFCPPN A PSDNGGWCNPPR HFDL+MP+FLK+AQY+AGI+PV+YRR
Sbjct: 108 NFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRR 155

[Close]

BLAST of Cp4.1LG01g10840 vs. ExPASy Swiss-Prot
Match: Q9M2S9 (Expansin-A16 OS=Arabidopsis thaliana OX=3702 GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.0e-53
Identity = 85/108 (78.70%), Postives = 100/108 (92.59%), Query Frame = 0


Query: 1   MGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT 60
           MGGACGYGNL+  GYG NTAALST+LFN+G SCGACFEIKCV+DP+WCHPGNPS+ +TAT
Sbjct: 51  MGGACGYGNLYSQGYGTNTAALSTSLFNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTAT 110

Query: 61  NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRR 109
           NFCPPN A PSDNGGWCNPPR HFDL+MP+FLK+A+Y+AGI+P++YRR
Sbjct: 111 NFCPPNLAQPSDNGGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYRR 158

[Close]

BLAST of Cp4.1LG01g10840 vs. ExPASy Swiss-Prot
Match: Q852A1 (Expansin-A7 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 3.4e-53
Identity = 88/110 (80.00%), Postives = 102/110 (92.73%), Query Frame = 0


Query: 1   MGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDP--QWCHPGNPSIIIT 60
           MGGACGYGNL+  GYGVN AALSTALFN+G SCGACFEIKCV+ P  +WCHPG+PSI+IT
Sbjct: 53  MGGACGYGNLYSQGYGVNNAALSTALFNSGQSCGACFEIKCVNQPGWEWCHPGSPSILIT 112

Query: 61  ATNFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRR 109
           ATNFCPPN+A+PSDNGGWCNPPRPHFDL+MPMFL +A+Y+AGI+PV+YRR
Sbjct: 113 ATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRR 162

[Close]

BLAST of Cp4.1LG01g10840 vs. NCBI nr
Match: XP_023524553.1 (expansin-A4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 242 bits (617), Expect = 1.11e-78
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT 60
           MGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT
Sbjct: 44  MGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT 103

Query: 61  NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRRRG 110
           NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRR G
Sbjct: 104 NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRRVG 153

[Close]

BLAST of Cp4.1LG01g10840 vs. NCBI nr
Match: XP_022957128.1 (expansin-A4-like [Cucurbita moschata] >KAG7031604.1 Expansin-A4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 242 bits (617), Expect = 1.11e-78
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT 60
           MGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT
Sbjct: 44  MGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT 103

Query: 61  NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRRRG 110
           NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRR G
Sbjct: 104 NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRRVG 153

[Close]

BLAST of Cp4.1LG01g10840 vs. NCBI nr
Match: XP_022993594.1 (expansin-A4-like [Cucurbita maxima])

HSP 1 Score: 241 bits (614), Expect = 3.17e-78
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT 60
           MGGACGYGNL+DDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT
Sbjct: 44  MGGACGYGNLYDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT 103

Query: 61  NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRRRG 110
           NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRR G
Sbjct: 104 NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRRVG 153

[Close]

BLAST of Cp4.1LG01g10840 vs. NCBI nr
Match: KAG6600992.1 (Expansin-A4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 239 bits (610), Expect = 1.29e-77
Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 0


Query: 1   MGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT 60
           MGGACGYGNLF DGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT
Sbjct: 44  MGGACGYGNLFGDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT 103

Query: 61  NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRRRG 110
           NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRR G
Sbjct: 104 NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRRVG 153

[Close]

BLAST of Cp4.1LG01g10840 vs. NCBI nr
Match: GFA82534.1 (barwin-like endoglucanase [Tanacetum cinerariifolium])

HSP 1 Score: 222 bits (566), Expect = 5.16e-72
Identity = 95/108 (87.96%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT 60
           MGGACGYGNL+  GYGVNTAALSTALFNNGLSCGACFE+KC DDPQWCHPG+PSI+ITAT
Sbjct: 1   MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCTDDPQWCHPGSPSILITAT 60

Query: 61  NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRR 108
           NFCPPNFA PSDNGGWCNPPRPHFDL+MPMFLK+A+YKAGI+PV+YRR
Sbjct: 61  NFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYKAGIVPVSYRR 108

[Close]

BLAST of Cp4.1LG01g10840 vs. ExPASy TrEMBL
Match: A0A6J1GZC4 (Expansin OS=Cucurbita moschata OX=3662 GN=LOC111458602 PE=3 SV=1)

HSP 1 Score: 242 bits (617), Expect = 5.38e-79
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT 60
           MGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT
Sbjct: 44  MGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT 103

Query: 61  NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRRRG 110
           NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRR G
Sbjct: 104 NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRRVG 153

[Close]

BLAST of Cp4.1LG01g10840 vs. ExPASy TrEMBL
Match: A0A6J1K0L6 (Expansin OS=Cucurbita maxima OX=3661 GN=LOC111489541 PE=3 SV=1)

HSP 1 Score: 241 bits (614), Expect = 1.54e-78
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT 60
           MGGACGYGNL+DDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT
Sbjct: 44  MGGACGYGNLYDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT 103

Query: 61  NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRRRG 110
           NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRR G
Sbjct: 104 NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRRVG 153

[Close]

BLAST of Cp4.1LG01g10840 vs. ExPASy TrEMBL
Match: A0A118K2U1 (Expansin OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_016763 PE=3 SV=1)

HSP 1 Score: 223 bits (569), Expect = 1.49e-71
Identity = 95/109 (87.16%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 1   MGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT 60
           MGGACGYGNL+  GYGVNTAALSTALFNNGLSCGACFE+KC+DDPQWCHPGNPSI+ITAT
Sbjct: 49  MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCIDDPQWCHPGNPSILITAT 108

Query: 61  NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRRR 109
           NFCPPNFA PSDNGGWCNPPRPHFDL+MPMFLK+A Y+AGI+PV+YRR+
Sbjct: 109 NFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAAYRAGIVPVSYRRQ 157

[Close]

BLAST of Cp4.1LG01g10840 vs. ExPASy TrEMBL
Match: A0A2U1MIQ7 (Expansin OS=Artemisia annua OX=35608 GN=CTI12_AA376340 PE=3 SV=1)

HSP 1 Score: 222 bits (566), Expect = 3.88e-71
Identity = 95/108 (87.96%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT 60
           MGGACGYGNL+  GYGVNTAALSTALFNNGLSCGACFE+KC DDPQWCHPG+PSI+ITAT
Sbjct: 53  MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCTDDPQWCHPGSPSILITAT 112

Query: 61  NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRR 108
           NFCPPNFA PSDNGGWCNPPRPHFDL+MPMFLK+A+YKAGI+PV+YRR
Sbjct: 113 NFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYKAGIVPVSYRR 160

[Close]

BLAST of Cp4.1LG01g10840 vs. ExPASy TrEMBL
Match: A0A2U1MIR8 (Expansin OS=Artemisia annua OX=35608 GN=CTI12_AA376340 PE=3 SV=1)

HSP 1 Score: 222 bits (566), Expect = 4.00e-71
Identity = 95/108 (87.96%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT 60
           MGGACGYGNL+  GYGVNTAALSTALFNNGLSCGACFE+KC DDPQWCHPG+PSI+ITAT
Sbjct: 53  MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCTDDPQWCHPGSPSILITAT 112

Query: 61  NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRR 108
           NFCPPNFA PSDNGGWCNPPRPHFDL+MPMFLK+A+YKAGI+PV+YRR
Sbjct: 113 NFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYKAGIVPVSYRR 160

[Close]

BLAST of Cp4.1LG01g10840 vs. TAIR 10
Match: AT2G28950.1 (expansin A6 )

HSP 1 Score: 213.8 bits (543), Expect = 7.5e-56
Identity = 89/108 (82.41%), Postives = 100/108 (92.59%), Query Frame = 0


Query: 1   MGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT 60
           MGGACGYGNL+  GYGVNTAALSTALFNNG SCGACFE+KC  DP+WCH G+PSI ITAT
Sbjct: 48  MGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITAT 107

Query: 61  NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRR 109
           NFCPPNFA PSDNGGWCNPPRPHFDL+MPMFLK+A+Y+AGI+PV++RR
Sbjct: 108 NFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRR 155

[Close]

BLAST of Cp4.1LG01g10840 vs. TAIR 10
Match: AT2G37640.1 (Barwin-like endoglucanases superfamily protein )

HSP 1 Score: 211.5 bits (537), Expect = 3.7e-55
Identity = 89/108 (82.41%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   MGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT 60
           MGGACGYGNL+  GYGVNTAALSTALFNNG SCGACFEIKC DDP+WC PGNPSI++TAT
Sbjct: 53  MGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCTDDPRWCVPGNPSILVTAT 112

Query: 61  NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRR 109
           NFCPPNFA PSD+GGWCNPPR HFDL+MPMFLK+  Y+AGI+PV+YRR
Sbjct: 113 NFCPPNFAQPSDDGGWCNPPREHFDLAMPMFLKIGLYRAGIVPVSYRR 160

[Close]

BLAST of Cp4.1LG01g10840 vs. TAIR 10
Match: AT2G39700.1 (expansin A4 )

HSP 1 Score: 211.5 bits (537), Expect = 3.7e-55
Identity = 88/108 (81.48%), Postives = 100/108 (92.59%), Query Frame = 0


Query: 1   MGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT 60
           MGGACGYGNL+  GYG NTAALSTALFNNG+SCGACFE+KC +DPQWCH G+PSI+ITAT
Sbjct: 48  MGGACGYGNLYSQGYGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITAT 107

Query: 61  NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRR 109
           NFCPPN A PSDNGGWCNPPR HFDL+MP+FLK+AQY+AGI+PV+YRR
Sbjct: 108 NFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRR 155

[Close]

BLAST of Cp4.1LG01g10840 vs. TAIR 10
Match: AT3G55500.1 (expansin A16 )

HSP 1 Score: 209.5 bits (532), Expect = 1.4e-54
Identity = 85/108 (78.70%), Postives = 100/108 (92.59%), Query Frame = 0


Query: 1   MGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT 60
           MGGACGYGNL+  GYG NTAALST+LFN+G SCGACFEIKCV+DP+WCHPGNPS+ +TAT
Sbjct: 51  MGGACGYGNLYSQGYGTNTAALSTSLFNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTAT 110

Query: 61  NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRR 109
           NFCPPN A PSDNGGWCNPPR HFDL+MP+FLK+A+Y+AGI+P++YRR
Sbjct: 111 NFCPPNLAQPSDNGGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYRR 158

[Close]

BLAST of Cp4.1LG01g10840 vs. TAIR 10
Match: AT5G02260.1 (expansin A9 )

HSP 1 Score: 208.0 bits (528), Expect = 4.1e-54
Identity = 88/108 (81.48%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   MGGACGYGNLFDDGYGVNTAALSTALFNNGLSCGACFEIKCVDDPQWCHPGNPSIIITAT 60
           MGGACGYGNL+  GYGVNTAALSTALFNNGLSCG+CFE+KC++DP WC PGNPSI+ITAT
Sbjct: 49  MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCINDPGWCLPGNPSILITAT 108

Query: 61  NFCPPNFAIPSDNGGWCNPPRPHFDLSMPMFLKLAQYKAGIIPVTYRR 109
           NFCPPNF   SDNGGWCNPPR HFDL+MPMFL +A+YKAGI+PV+YRR
Sbjct: 109 NFCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYRR 156

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g10840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38865	1.1e-54	82.41	Expansin-A6 OS=Arabidopsis thaliana OX=3702 GN=EXPA6 PE=2 SV=2	[more]
O80932	5.3e-54	82.41	Expansin-A3 OS=Arabidopsis thaliana OX=3702 GN=EXPA3 PE=2 SV=1	[more]
O48818	5.3e-54	81.48	Expansin-A4 OS=Arabidopsis thaliana OX=3702 GN=EXPA4 PE=1 SV=1	[more]
Q9M2S9	2.0e-53	78.70	Expansin-A16 OS=Arabidopsis thaliana OX=3702 GN=EXPA16 PE=2 SV=1	[more]
Q852A1	3.4e-53	80.00	Expansin-A7 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA7 PE=2 SV=1	[more]

BLAST of Cp4.1LG01g10840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023524553.1	1.11e-78	99.09	expansin-A4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022957128.1	1.11e-78	99.09	expansin-A4-like [Cucurbita moschata] >KAG7031604.1 Expansin-A4 [Cucurbita argyr...	[more]
XP_022993594.1	3.17e-78	98.18	expansin-A4-like [Cucurbita maxima]	[more]
KAG6600992.1	1.29e-77	98.18	Expansin-A4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
GFA82534.1	5.16e-72	87.96	barwin-like endoglucanase [Tanacetum cinerariifolium]	[more]

BLAST of Cp4.1LG01g10840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GZC4	5.38e-79	99.09	Expansin OS=Cucurbita moschata OX=3662 GN=LOC111458602 PE=3 SV=1	[more]
A0A6J1K0L6	1.54e-78	98.18	Expansin OS=Cucurbita maxima OX=3661 GN=LOC111489541 PE=3 SV=1	[more]
A0A118K2U1	1.49e-71	87.16	Expansin OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_016763 PE=3 SV=1	[more]
A0A2U1MIQ7	3.88e-71	87.96	Expansin OS=Artemisia annua OX=35608 GN=CTI12_AA376340 PE=3 SV=1	[more]
A0A2U1MIR8	4.00e-71	87.96	Expansin OS=Artemisia annua OX=35608 GN=CTI12_AA376340 PE=3 SV=1	[more]

BLAST of Cp4.1LG01g10840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28950.1	7.5e-56	82.41	expansin A6	[more]
AT2G37640.1	3.7e-55	82.41	Barwin-like endoglucanases superfamily protein	[more]
AT2G39700.1	3.7e-55	81.48	expansin A4	[more]
AT3G55500.1	1.4e-54	78.70	expansin A16	[more]
AT5G02260.1	4.1e-54	81.48	expansin A9	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007118	Expansin/Lol pI	PRINTS	PR01225	EXPANSNFAMLY	coord: 1..19 score: 67.63 coord: 99..115 score: 43.38 coord: 23..41 score: 73.29
IPR002963	Expansin	PRINTS	PR01226	EXPANSIN	coord: 14..28 score: 90.0 coord: 91..104 score: 64.05 coord: 55..65 score: 83.94 coord: 41..52 score: 51.67 coord: 74..91 score: 77.78
IPR007112	Expansin/pollen allergen, DPBB domain	SMART	SM00837	dpbb_1	coord: 19..106 e-value: 7.0E-58 score: 208.3
IPR007112	Expansin/pollen allergen, DPBB domain	PROSITE	PS50842	EXPANSIN_EG45	coord: 2..108 score: 27.397274
IPR009009	RlpA-like protein, double-psi beta-barrel domain	PFAM	PF03330	DPBB_1	coord: 19..106 e-value: 5.4E-24 score: 84.3
IPR036908	RlpA-like domain superfamily	GENE3D	2.40.40.10		coord: 1..109 e-value: 7.3E-35 score: 122.0
IPR036908	RlpA-like domain superfamily	SUPERFAMILY	50685	Barwin-like endoglucanases	coord: 1..108
None	No IPR available	PANTHER	PTHR31867	EXPANSIN-A15	coord: 1..109
None	No IPR available	PANTHER	PTHR31867:SF203	EXPANSIN-A6	coord: 1..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g10840.1	Cp4.1LG01g10840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009664	plant-type cell wall organization
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016020	membrane