Cp4.1LG01g10110 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g10110
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG01: 6788945 .. 6794615 (-)
RNA-Seq Expression	Cp4.1LG01g10110
Synteny	Cp4.1LG01g10110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAATTTACAGGAATCTGGAGACGCCTTCTCCCGCGAATTTCTACTGCCGAAGTTGCAATTGCGAGAGTCCTTTAGGTCTTTGTCGGCGACGGCAAGTTTCCGCCATTTAGGTCTTCTTCTCCGACTACGATCCTTCTTCCTCTTGCTTGTTTGCTAATTGTTGAAAGGAAATTTACATTTACCGCTTTTCTCTTTGTCTTGATCTGAATAAGATTCGATCGGTTCTCCTTTTCTGATGCTGTTACTACGCTAGTGAACTTTAAAGATTGAAATTAAGAGTTGTATGTTTGGTAGATGATGTTTGTTTGCCGAAAATTTTGAAAAGGGGAGCTGGTGAGGGTTAATTGTGTTTGCAAAATCCTGTGGAAGCGGATTTTGTTGGTGAAGTTTTGGAGTCGATCTATTCTCTCCAACTATGGTACTCTCCTTGAGTTTCTTCTTAAATTTTTGATCGTGAAAATTGAGTTCTTGCTGTATTGAAAAATATTAGCGACATGAAAAGTTATTGTTGCTCCTTTTTTAGTTTTTAAATTCAGGGAAGAATTAGAATGGAAAGGAACTGCTTGTCTGTGATCTACATGACATCTAGTATGAACAGACACTGATATTTTAATGAACAATGATGATTTACTCCTTGCCTTAAACCTTATTGCTACTGGTCATATTTGGTGAGACTCGAGAGAGGAAACGTGTCTTAAGAAATTTAAATGAGAAAAGATTTCAGATATAGATATTATGGGGTGGTTTAAAAGGTGAAAAAGAATTTGATCATCCGCCCTTACTCGTTCCAACTGCAAGTTGACTGAGAAATGGAGAAGGGTTGAAAGTAGTACATTAGAAGGAACTTGAAGCTACCTCAATCTAGGCACTGACTTAAGTATCAGAATATGTTGGGTAGCACCTATTGGTGTCAGCTTCTGGTTTGCAGGTCGGTCAACCCTTCAACTACGTCTTCTGGTGATCAAAATATCAAGTCCATATATAGAATAATTGATATTTTCTCTGGCTTGCTATCATAACACTCATCTTTTAGAGCTGATAGGCCAAAAAGGATGTCTTTTCTAAATTATACTGGCAGAAGATTTTGCAGGCTGATACGAGTACAAATTTCTTGAAGGGTAAGTGTAACAGCCCAAGTCCACCCTAGCAGATATTCTCCTTTTTGGGCTGTTACAATTAGTGTCAGAGTCAGACACCGGGTGGTGTGACAGCGAGAATGTTGAGCCCCAAAGGGGTGGATTGCAAGATCCTACATTAGTTGGAGAGGGGAACAAATCATTGTTTTATAAGGGCGTGAAAACCTCTCCTCAGCAGACGTGCTTTAAAATTTTTGAGAGAAAGCTTGAAGAGGACAATATCTGCTACCGGTGGACTTGGGCTATTACAACCACACTTCAAGGAATGTCACCATGATCAGAGAATAGTAGGCATGTTCGCAATGTCATTTTGCTGAGGAGGAAGAAAGTATACTTCTCGACTCCTCGTAGCTGTCGACTAACACGTAGACAGTTTTCTACAGAGGGCAAAGTTAAAGCAGTGCAACAATCGGGAGAGATGCAAGAAAGTTGAAATTTCATGGAACTAATAGAAGACTGAAACTGGTTATAAATTTGATATTTGTTGTGAAACTGACCAGTTGGTATGAGTATGGAATTTTTCTTTTGATTCCATGTGTTTGCTTAAAGCACCTTTTTTTTAATGCTAATAGCAACTGTAAGAACTAAGAAGTTATCGCCTTCTTGATTCATATTGCATATTTTTCGTGAGTTCAGTTGAAACTATTCGTTTGAGCTCTTTATCGATATGTCACTTTTCTATGGCTGTTTGCACAAGAATGCAAATGCAGAGATGCATAGGTGAATAAAAACTTGCTGGTTCGTTAATTTACATTGGTAAATTTTCCAATCAAGGTAGCTTCTGAACTATCCATATCTTATAAACGACTTTGTTTTCCTTGATTTATCATAGTAATGCAGTATGATACTACAAAATTGATATATGCACCTACCATTGTTCAACTGTTCCTCACCGCTTTCCAAATTTAGTATATAAATTCACTTTTTTACACCTCTAATTAAATTTGAATTATCCTGCAGTTACCTTGTTAACCTATACTCTAGGAAAAAAAGGCGCAGAATATACTAGCAAATCTACAGACAGCAGACGACTCCTGCATTTTATGATGCCTTCTCAAGTTGAGTTGAAGTGTGGGAGCCATCATGACAAGGATTTTGCCTTTTGGAATATTCTTTGACCTGGAGCAAGTATTGCCAAAGGGTCATAAGCTTTTTTTCTCTGTACATATGTTTCCCACATTGGGCCAAAATGGGCCTGCCATTCGTTCCTTGTAGTATAATGTGGCAAATATTGTTTTTCTCCTAGATTGGCTGTTCTACAGAATTCCAGAATTCTCATGTTCTGAGCTAAGATGTATTCTAAGCTGTCGTTTCCTCTAGAAAAAGGAACTGCAGAGGTCAGAAACGCCACCAGGTAGAAAATCTCCTCCTCTGGAATAACTACAGAAGTTCTATTATCCCACCTGAAATTCAGAAATAATTGAATCAACACAATACTTATGGCAAGAATATTCTAGCCAGTAACTTAGTTAGATAGTGAATTACTTTGATTTGTTAAGTGGATAGATTAGGACTGGGCCGTTGCTTGTTTCCTTCAGGATATTGCCGAAAACCCCTTCTGCAAATTTTTTTATTTTACTTTTTGGAATAAGGAGATTCAGCCATGGGTGTGGGACTTCCCACAAGCCTTTTGACTGTAGTTTGACGGCTGATACTTGAACTCTGTCCAGGAATTCCACATATGTAACTTCTGATATGAAAAGTGTTGATGGGATATAACTTAACTGAGACAATAAGCGTGTGACTTCCTGCATAGTAAAAGCATGTGCATATGACATCCTCTGAACCAAATATATTTTTCCATGTATTTATTTGATCCTTTTTACATAGATTTAATGTGAGTACTTTACCTGATCGATAATGTTGTCCTCGGTGTGGTGAAAGTACTTGGCCAATTCTAGGCAATAAAGAATTTTTCCATCAGACTTGAACTGGCTAGCTTGAACTGGGTCTTGTGGATTGAATGATGATCTCCAATTATTCAAAAGACCAGTTCTGTTTATTATCACGAATCCCTCAATGTAGTCGAATGTATTTTCTGCAGATATCAAGAGCTCCTGCTCTGAGGAAAAAGTAGTGAAGTCTAAGTACAGCACCCTTATCCATTTTACCTGTCAAAGATAGAAGAATTGTGTTAGAACAGTCCTTCATAAACACTTTAGAGAAATCTTCCAAGTTTCCTTTACAAACAATAATCTTACCATTGTTGGCGCTGGTTCAAGTAGAATTTTTGCCCTTGTGATAATTCCAAACTGGCCTAATCCTCCAAGAACACCGTAAAAGAGGTCACTGTTCTGTTCCTTTGAACAGCTTACCACATCCCCTTTTCCTGAATTTAGTTTCAATCCATTTGTCAGTAAACGTAATGTTATGCTGCCTGGTACCAGCTCATTTTTTGATAAGTTTCAACTGTCTTTAATGGCTTTATGATTGGGTGATGAAATACATACAGTAAGAGAACTTGGCAACTTAATCGGCCACCTATGGGACATGGCGTTAAGACAAGTCAATAGTTTGCCACTTATCTTTTCAAGTTCTTTCCCTACTTTTGTTTGCCATTCATAGTGCAATTATTAACTGCATGGATTTCCTTCCCAATTACTCTTAACATTTTACATGTCCACAGGAGCCAGAGACATAGTCTTGCAAATGTATAGTATAATGTATATGGCAACGAACCTGTTACAACCTCCAGCTGATGAACGTTGCTGATCTGAGGGCCATGCCGAAATGCCTGTCCGCTGATCCCTGCATTGGATAAAGTACCTCCAACCGTTAGATGTAGGTAGTCTGTCCATGATTTTGGTGTTAATCCGTATTTCAAGCTCTCGTGCAGGATATTTATCCATAACTCCCCTCCAGAAACATCGACGTAAGTAAAGTTTCTAGTATGAACCTGCATTTTAGGGTCCTGGAGTGATTCCATGTTAATCACAACTCCTTGGTGGGCCTGCGCTTGGCCATGGAGCGAGTGGCCATGGCCTCTAGCTGCAACTGTGAGCTCTGAACGAGGTCCCATCTTCCAAATATGCTCTATAGTCATGGCGATATCAGAAACTGATGATGGATGCAGTACTGCTGCAGGGTAATATTGATATTGATTACCGAAGTCTCTTGCGGCAAATTGCACTTTGTCAAACTCAAAATGCCCGTTGATGGAAAGCATCTTCAGTGACGAATGGATGCTTGTGAAGCATAGATTCATCCTAACAGCAATACAGCTCAGGAACAAAAGCATAAAGCTTCGGATGGAAAGCATGCTGTTTTGTTATTTCTAACGAGCAAATGCACAAGAGGTGTAGGAGGGCCTTGAAAATGCTGAACTTGAGGTGTATTTAAAGGGAGATTAAGATTATAGCGGCTGAGTCATTTAGACTTGAGTTGGGAGAATACGTATGAAGACTGCCTACTTAGGGAAGAGTTTCGGGATTTCCTTTTTGTTTCTCACTGACATTAATTATGAGGTTACTCTTCTTCAATCCTATTATTGCCGGAATTTAACATTGCGTATCTAGTTTCAGATTCAGTCAGAAGAGGATACTAGCCCATGTTGATTCATTGGAGACGAAGACAGAAGGATCAGCAGGTCGTCAGAGGGTCCATTATACACGTGATATTTAAACTGCCTGCATGATCTTGAGAGAAAAGAGATATGATGGGGATTGTGTCGGACCCCGTTTTGTGGCCACTCTTTACAGGTCAAGGAGAAAGGAGAGCGAACATGGGGCTGACAGCTTCGTGGTGGCACTCAACGCCTACTCTTTCTCCTATCGACTTCCACAGGTTTGAAACCCAAGTTCCCAACAATTTGACAAGTTTTAAAGATTCGATCTTGTTTATCTTGTTATCTGCCATTAAAATAGTGCAATTATGGGCTTTTTCCCCTTCTGTTGCAATTTGTATGTGAGAACCAATGAGTTTTTTACAAATTTCAGAGAAAAGCATCTTTCCCCTCTTGCCTTTATGCTACATGGCCCTCTAGAAAATGAAAGACAAGAAAATTAGTCAATATCTACATCATGTGGCACCCGTGATGCAGTTCTTCTTCCACGATAATAAGCCTCAAGGAAATTTGCATGTCTTCTTCAATCTTAGATTGGCTTGGCATTGGGATCCAATCAAAATCTGCCTAATGGTTTTCTTTGATAGCCACCTGAATCTCTAGAGTTTTCAGTGTTCTGACAACATCTATATATCATGCATTCAACTTATTTAACTTGTGGCGTTACAAAAGCGAAGCTATTTAAGGTTGTTACAGGTTGTGGGCTTATTGGAATCAAAGGGAGGCTGAGAATGAACTGTCTCCCATTACCTGACTAATAGATTTATATTCCTATGTTTAATTCCCAATGCGAACAAAGTTGTGGCAAATTATTATCATGTCTCTGTATGGTTTTTTTGTTGTTGTCGAAGTTCACTAGGACTGCAAGATCTCACTTTGCAGGGCATAGGTAGGGGGGTAGCACTCAAGCCTGGATTTTTGGAGTTACCCCATTGCACCCAGGAATATGAATCCGTTTTTGTACAAAACTAG

mRNA sequence

TAAATTTACAGGAATCTGGAGACGCCTTCTCCCGCGAATTTCTACTGCCGAAGTTGCAATTGCGAGAGTCCTTTAGGTCTTTGTCGGCGACGGCAAGTTTCCGCCATTTAGGTCTTCTTCTCCGACTACGATCCTTCTTCCTCTTGCTTGTTTGCTAATTGTTGAAAGGAAATTTACATTTACCGCTTTTCTCTTTGTCTTGATCTGAATAAGATTCGATCGGTTCTCCTTTTCTGATGCTGTTACTACGCTAGTGAACTTTAAAGATTGAAATTAAGAGTTGTATGTTTGGTAGATGATGTTTGTTTGCCGAAAATTTTGAAAAGGGGAGCTGGTGAGGGTTAATTGTGTTTGCAAAATCCTGTGGAAGCGGATTTTGTTGGTGAAGTTTTGGAGTCGATCTATTCTCTCCAACTATGGTACTCTCCTTGAGTTTCTTCTTAAATTTTTGATCGTGAAAATTGAGTTCTTGCTGTATTGAAAAATATTAGCGACATGAAAAGTTATTGTTGCTCCTTTTTTAGTTTTTAAATTCAGGGAAGAATTAGAATGGAAAGGAACTGCTTGTCTGTGATCTACATGACATCTAGTATGAACAGACACTGATATTTTAATGAACAATGATGATTTACTCCTTGCCTTAAACCTTATTGCTACTGGTCATATTTGGTGAGACTCGAGAGAGGAAACGTGTCTTAAGAAATTTAAATGAGAAAAGATTTCAGATATAGATATTATGGGGTGGTTTAAAAGGTGAAAAAGAATTTGATCATCCGCCCTTACTCGTTCCAACTGCAAGTTGACTGAGAAATGGAGAAGGGTTGAAAGTAGTACATTAGAAGGAACTTGAAGCTACCTCAATCTAGGCACTGACTTAAGTATCAGAATATGTTGGGTAGCACCTATTGGTGTCAGCTTCTGGTTTGCAGGCTGATACGAGTACAAATTTCTTGAAGGGTAAGTGTAACAGCCCAAGTCCACCCTAGCAGATATTCTCCTTTTTGGGCTGTTACAATTAGTGTCAGAGTCAGACACCGGGTGGTGTGACAGCGAGAATGTTGAGCCCCAAAGGGGTGGATTGCAAGATCCTACATTAGTTGGAGAGGGGAACAAATCATTGTTTTATAAGGGCGTGAAAACCTCTCCTCAGCAGACGTGCTTTAAAATTTTTGAGAGAAAGCTTGAAGAGGACAATATCTGCTACCGGTGGACTTGGGCTATTACAACCACACTTCAAGGAATGTCACCATGATCAGAGAATAGTAGGCATGTTCGCAATGTCATTTTGCTGAGGAGGAAGAAAGTATACTTCTCGACTCCTCGTAGCTGTCGACTAACACGTAGACAGTTTTCTACAGAGGGCAAAGTTAAAGCAGTGCAACAATCGGGAGAGATGCAAGAAAGTTGAAATTTCATGGAACTAATAGAAGACTGAAACTGGTTATAAATTTGATATTTGTTGTGAAACTGACCAGTTGGTATGAGTATGGAATTTTTCTTTTGATTCCATGTGTTTGCTTAAAGCACCTTTTTTTTAATGCTAATAGCAACTGTAAGAACTAAGAAGTTATCGCCTTCTTGATTCATATTGCATATTTTTCGTGAGTTCAGTTGAAACTATTCGTTTGAGCTCTTTATCGATATGTCACTTTTCTATGGCTGTTTGCACAAGAATGCAAATGCAGAGATGCATAGGTGAATAAAAACTTGCTGGTTCGTTAATTTACATTGGTAAATTTTCCAATCAAGGTAGCTTCTGAACTATCCATATCTTATAAACGACTTTGTTTTCCTTGATTTATCATAGTAATGCAGTATGATACTACAAAATTGATATATGCACCTACCATTGTTCAACTGTTCCTCACCGCTTTCCAAATTTAGTATATAAATTCACTTTTTTACACCTCTAATTAAATTTGAATTATCCTGCAGTTACCTTGTTAACCTATACTCTAGGAAAAAAAGGCGCAGAATATACTAGCAAATCTACAGACAGCAGACGACTCCTGCATTTTATGATGCCTTCTCAAGTTGAGTTGAAGTGTGGGAGCCATCATGACAAGGATTTTGCCTTTTGGAATATTCTTTGACCTGGAGCAAGTATTGCCAAAGGGTCATAAGCTTTTTTTCTCTGTACATATGTTTCCCACATTGGGCCAAAATGGGCCTGCCATTCGTTCCTTGTAGTATAATGTGGCAAATATTGTTTTTCTCCTAGATTGGCTGTTCTACAGAATTCCAGAATTCTCATGTTCTGAGCTAAGATGTATTCTAAGCTGTCGTTTCCTCTAGAAAAAGGAACTGCAGAGGTCAGAAACGCCACCAGGAGCCAGAGACATAGTCTTGCAAATGTATAGTATAATGTATATGGCAACGAACCTGTTACAACCTCCAGCTGATGAACGTTGCTGATCTGAGGGCCATGCCGAAATGCCTGTCCGCTGATCCCTGCATTGGATAAAGTACCTCCAACCGTTAGATGTAGGTAGTCTGTCCATGATTTTGGTGTTAATCCGTATTTCAAGCTCTCGTGCAGGATATTTATCCATAACTCCCCTCCAGAAACATCGACGTAAGTAAAGTTTCTAGTATGAACCTGCATTTTAGGGTCCTGGAGTGATTCCATGTTAATCACAACTCCTTGGTGGGCCTGCGCTTGGCCATGGAGCGAGTGGCCATGGCCTCTAGCTGCAACTGTGAGCTCTGAACGAGGTCCCATCTTCCAAATATGCTCTATAGTCATGGCGATATCAGAAACTGATGATGGATGCAGTACTGCTGCAGGGTAATATTGATATTGATTACCGAAGTCTCTTGCGGCAAATTGCACTTTGTCAAACTCAAAATGCCCGTTGATGGAAAGCATCTTCAGTGACGAATGGATGCTTGTGAAGCATAGATTCATCCTAACAGCAATACAGCTCAGGAACAAAAGCATAAAGCTTCGGATGGAAAGCATGCTGTTTTGTTATTTCTAACGAGCAAATGCACAAGAGGTGTAGGAGGGCCTTGAAAATGCTGAACTTGAGGTGTATTTAAAGGGAGATTAAGATTATAGCGGCTGAGTCATTTAGACTTGAGTTGGGAGAATACGTATGAAGACTGCCTACTTAGGGAAGAGTTTCGGGATTTCCTTTTTGTTTCTCACTGACATTAATTATGAGGTTACTCTTCTTCAATCCTATTATTGCCGGAATTTAACATTGCGTATCTAGTTTCAGATTCAGTCAGAAGAGGATACTAGCCCATGTTGATTCATTGGAGACGAAGACAGAAGGATCAGCAGGTCGTCAGAGGGTCCATTATACACGTGATATTTAAACTGCCTGCATGATCTTGAGAGAAAAGAGATATGATGGGGATTGTGTCGGACCCCGTTTTGTGGCCACTCTTTACAGGTCAAGGAGAAAGGAGAGCGAACATGGGGCTGACAGCTTCGTGGTGGCACTCAACGCCTACTCTTTCTCCTATCGACTTCCACAGTTCACTAGGACTGCAAGATCTCACTTTGCAGGGCATAGGTAGGGGGGTAGCACTCAAGCCTGGATTTTTGGAGTTACCCCATTGCACCCAGGAATATGAATCCGTTTTTGTACAAAACTAG

Coding sequence (CDS)

ATGATGGGGATTGTGTCGGACCCCGTTTTGTGGCCACTCTTTACAGGTCAAGGAGAAAGGAGAGCGAACATGGGGCTGACAGCTTCGTGGTGGCACTCAACGCCTACTCTTTCTCCTATCGACTTCCACAGTTCACTAGGACTGCAAGATCTCACTTTGCAGGGCATAGGTAGGGGGGTAGCACTCAAGCCTGGATTTTTGGAGTTACCCCATTGCACCCAGGAATATGAATCCGTTTTTGTACAAAACTAG

Protein sequence

MMGIVSDPVLWPLFTGQGERRANMGLTASWWHSTPTLSPIDFHSSLGLQDLTLQGIGRGVALKPGFLELPHCTQEYESVFVQN

Homology

[Close]

BLAST of Cp4.1LG01g10110 vs. NCBI nr
Match: KAG6601049.1 (hypothetical protein SDJN03_06282, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031860.1 hypothetical protein SDJN02_05901 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 63.9 bits (154), Expect = 3.55e-11
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 54 QGIGRGVALKPGFLELPHCTQEYESVFVQN 83
          QGIGRGVALKPGFLELP CTQEYESVF+QN
Sbjct: 51 QGIGRGVALKPGFLELPQCTQEYESVFIQN 80

[Close]

BLAST of Cp4.1LG01g10110 vs. NCBI nr
Match: KAG6600110.1 (hypothetical protein SDJN03_05343, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 52.4 bits (124), Expect = 2.86e-06
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 1  MMGIVSDPVLWPLFTGQGERRANMGLTASWWHSTPTL 37
          MMGIVS P+L      QGERRANMGLT SWW+STP L
Sbjct: 62 MMGIVSGPLL---RVKQGERRANMGLTPSWWNSTPLL 95

[Close]

BLAST of Cp4.1LG01g10110 vs. NCBI nr
Match: KAG7030780.1 (hypothetical protein SDJN02_04817, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 52.4 bits (124), Expect = 3.67e-06
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 1   MMGIVSDPVLWPLFTGQGERRANMGLTASWWHSTPTL 37
           MMGIVS P+L      QGERRANMGLT SWW+STP L
Sbjct: 74  MMGIVSGPLL---RVKQGERRANMGLTPSWWNSTPLL 107

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g10110 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g10110 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601049.1	3.55e-11	93.33	hypothetical protein SDJN03_06282, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6600110.1	2.86e-06	70.27	hypothetical protein SDJN03_05343, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7030780.1	3.67e-06	70.27	hypothetical protein SDJN02_04817, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Cp4.1LG01g10110 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g10110 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g10110.1	Cp4.1LG01g10110.1	mRNA