Cp4.1LG01g10050 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g10050
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Gag-Pol polyprotein/retrotransposon
Location	Cp4.1LG01: 6976481 .. 6980631 (+)
RNA-Seq Expression	Cp4.1LG01g10050
Synteny	Cp4.1LG01g10050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTCTCTCTCTCTCTCAAATGCCAACTCCACTTAAGCTCACCAATGGCGCCATCCCTTGCGTCGTTTTCCCGGTGGCGGTAAAAGCTTCACTCGATTTTGAAATTTCTGCGACATTTTAGAATCTGAATGCGTAAACATTTTAATTTCTATTATCATCTTCCCGAATTGTTATTCTTCAGGGTTCGAATAAACTGCAGCCGAAGACAATTTTCAGAGCTTCCCCGCCATTTCGCGTCTCAAAGCCGAATAACATTTTTGTTAGTCGGAACCCTAGCATCCGACAATGCCTTAACAATGCCGAAATTAGCGTAAGTGTTTCTCAGTGAATTGGCAAAACAGCAATCTCCTTCACTTTCTGCAGTTTAATTCTTTCGTTCTATGGTGTTTTGTCCACTTGCTTCAGAATCTACGCCCTAATTTTTGGGGGTGGTTTCTGTGTTGTTTTGCTTATTGATGTCTCTTTCCAATTGAATTGTTCGGTCCGCGGAGCGATAATAATGTTTCAAACTTCTAATTGCCCTGGTTTTGCACCCTCTGAGTACCATCATGTCTTTCTTTTGTCTAATTGGCAATGAATGCTATGGTATGCTTGGTTCTATGCATTCCATTTGGCCCCATCACTGTTTTCGTTTGAATTGGGTTATAATTTCTTATATTTCGGAACTGAAACTTCTATGAAGTCGCTGGAAGATTATTTCTATGAAGATTTTTTGCATGTTTAAGTGTTGGTTTACTTTCTATTGACTTCAGTTGTTTATATGAATAGAATGTGGCAGTAAGTGAAATTTTAGGCACGAATGTTCCTGCATTTGGACAAGCGTATGTATTACTGATTAGATACTGCCAATGTCCTGTTATAGGCCAATGATCCATTGAAATCGGAAAATGGCTTTTCCAATCATGAAACTGAAGGTATGGCATAAAAAACCGAACCTATGAACTCATGGTTGAGTCTTGATGCATTCAGTGAACTTTAGATTTTCAAATGTCATATTCTTGATTAAGAACTTACGAATTCTCATCCCTTTCCTTCTCTCTCTTGTTAGGTTCGATGGAAAAGAATGAAAATCATAAAAAACATCCGCGAAAATCAATCGAGTACTACTACTACTTGCCTTGCATATATTTGGTGAATTCTAAGGCTACTGCTTTTTTCTGTTAATAATGCAATGGAGGTGGTGAGACCTTCCTTTTTCTGCTCAATCTCTCTCTACTCTTTAGTTTCTAATCAAAGTCATACTTGTACAACAAAGCTTAGCAACAAAAATAGTCTACTTCATGTTCCACTAATATTTGTACTGTTTTGTTGGTTATTGTCATTTTTAGTTTATATTGGTAGATTATTTTACATTTAAGAAAAAAGGGGGTCTCAGAATATATTTGATCCCCTAAGAATAAGTCATATCAAAGAGCAAGTCAAAGCCCTCAGACAGGCAATTTTTCATATTTATTTTTTATAATATCATTACTTATTGGTCAAGTCAAGTCAGCTTTGCGATTCTAGAATTTTGCAGTACATAAATGTTGGGTACAAAATACATAAAGTTATAAATTGAAAAGGAAACAAAGTTTCCATTTAGCAACCACATGAAATAAAACAGAGATCTTCTTGGCCTTATCAAAATGTTACAAAGATCTCCTTGGCTCTATTGAAAGGAAACGAAGAACTCTTCTTGCCTTTACCGAAATGAAACAAAATCTGCTTGACTTTATCGAAAGGAAACAAAGTTCTTCTTGGCCTTATTGAAATGAAACAAATATCTTATCGACTTTATCTTATTGGACGCATCAGTGCATACTTCATATTAGGCATACATCAGTCTTGGAGACATTACATTTCATTTTCGCTCATTTATTCTAGTATACGTTCATCTTGTAGGGTGCTGGATAAATTGAGGAGATATGGAGTTTCTGGAATATTGTCTTATGGATTGTTGAATACAGTCTACTATCTTACAACATTTCTTGTTGTGTGGTGAGTCCATTTCTATTTTTACTACTTAGTTACTACTATTATGAATTGTTACTACGTAGGAGAGACTTAAAGGCTTCATAAGTTTAGGAGGTTATTTGGTATGCGTGTTGGTGATTAGAATTGGATGTTCGGGGATGGCAATGATAGGAACCAGATGATTAGGCTTGGAAATTGTATATAGATAGGTAAGAATTAAGAAACTACAGTAAGATGTTTGAAAGCAATTCTTGGAAGTTGGATGCTTCCACCTCCCTCAACCCGATCAATTTAGTGGGACTCTGATTAAAAACACCTTTACCACCGATCAGTGGGCGATAATTTATTTTATGTTATTATTATTTAAAAATAATAATAATAGCACTCTCTATGTCATACTATTGTTTGTCTTCTGTTTATTTCTTCACTCTTCCATTAGCAGTGTACTCGGTCATGTTATCATATTATTTATTTGCATTTTAGGTTCTACATTGCACCACCACCTGCGAAAATGGGCTATGTTGCAGCTGCTGGAAGGTGAAAAACTTTATTGTAGGAGGCCCTTTCTATATGGCTAGTTGCTTTACTCCTTTTGTTGGGCTATCATTTTGGTCGTTTTCTTTCATTTTTCTCAATGAAAGCTTGGTTTTATATCGAAAAAAATATTTGTGTAGGATGGAGTTTTATAATAAGACATTGACACATAATAATCTTGTAGATTTCTCAAGATAATGGCTACAGTCTGGGCTGGAAGCCAAGTTACTAAGCTGGCAAGAGCGGCAGGGTGAGCTCTTATATTCCTGCTTTTTATCTATTACTATTCTGGTACGTGATTCTGCTCATCATTAAACAACCCAACTATATGAAGAGAACTGTAAGCCAAGTTAAATGCTTGCATTTTTTTTCCAACTTCCATAACTTAGAAAGGCCTACTTGATAACATCTTTGTTTTCAGTCTTCTATATTTATAATTACGCTCCTGTAACAACCCAAACCCACTACTAGTAGATATTGTTCTCTTTGGTTTTTTCCTTTCGGACTTCCCTTCAAGGTTCTAGGGAGAAGTTTCCACACCCTCATAAAAAATGTTTCGTTCTCCTCTTTAACTGATATGAGATCTCACAATCCATCCCCTTCGGGCCCAGCGTCCTCGTTGGCATTCATTCCCTTCTCCAATTGATGTGGGACTCCCCAATCCACCCCCTTCGGGGCCTAGTGTCCTTGCTGGCACACCGCCTCTTGTCCACCCCCCTTTGGAGCTCAACCTCCTCGTTGGCACATCGCCCGATGTCTGGCTCTGATACCATTTGTAACAGCCCAATTCCACCTTTAGCAGATATTGTCCTCTTTGAGTTTTCCCATTCGGGCTTCTCCTCAAGGTTTTTAAAACGCATCTGCTAGGGTTAGGTTTCACACTCTTATAAAGAATGTTTCGTTCTACTCCCCAACCGACGTGGGATCTCACAACTCATTTGCTCTTTTAAATCTATTTTCAAGATTGATTTTGTTAAAAAAAAAATATATTTAAAATCTGGTCAGTATTTTAAAAAATAGTAGTTCTACAAGTTTAATTCTCAAGAACAGAATCAAAAGTCGTCGGATATTAAATCTCACTCCCATTTCAATTCCTAAAACGAGGAAGCAACTTGTTAAAACCAAAGCTTCTCATTCATGCAGAGCTCTTGCTATGGCGCCGTTCGTCGACAGAGGATTGTCGTGGTTCACGGTCAAATACAACTTCAAGTCTCAGGGGAAGGTTACTAGAAACGAAACTTCAATACATCCATTGTGTTTTTTGTTTCATTTCATTGATATTATGCTCAAAATTAACCCATCTCCAGGCAGTTGTGGCGATTGTTGGATTCTGCTTAGGATTGTCTCTCTTGTTATTCATTGCTGTTACTCTGCTTTCAGCATAAGACAGGTTCTTCCCTTGGAAAGTAAGTACTTTTTCTCTCACATCATTCATTACCCTATTCCCAATGAGTGTTTCCTTGTCCTCAATATTGAAGGCTATCACCTTTTTTTTCTTCCTTAAAAATTAAACTTTCCAATATTTTAAAACATAGGGTGGAGGTTTAACCAAAACGATATGTTTTATCAACGAGATTGTCGTTATTGTCGAGAATATGTTACACAATTCAAATTTAGGTTTGAATTTTCATATTTCAATCTTTACCCTTCGTTGTTGAAACGGT

mRNA sequence

TCCTCTCTCTCTCTCTCAAATGCCAACTCCACTTAAGCTCACCAATGGCGCCATCCCTTGCGTCGTTTTCCCGGTGGCGGGTTCGAATAAACTGCAGCCGAAGACAATTTTCAGAGCTTCCCCGCCATTTCGCGTCTCAAAGCCGAATAACATTTTTGTTAGTCGGAACCCTAGCATCCGACAATGCCTTAACAATGCCGAAATTAGCGCCAATGATCCATTGAAATCGGAAAATGGCTTTTCCAATCATGAAACTGAAGGTTCGATGGAAAAGAATGAAAATCATAAAAAACATCCGCGAAAATCAATCGAGGTGCTGGATAAATTGAGGAGATATGGAGTTTCTGGAATATTGTCTTATGGATTGTTGAATACAGTCTACTATCTTACAACATTTCTTGTTGTGTGATTTCTCAAGATAATGGCTACAGTCTGGGCTGGAAGCCAAGTTACTAAGCTGGCAAGAGCGGCAGGAGCTCTTGCTATGGCGCCGTTCGTCGACAGAGGATTGTCGTGGTTCACGGTCAAATACAACTTCAAGTCTCAGGGGAAGGCAGTTGTGGCGATTGTTGGATTCTGCTTAGGATTGTCTCTCTTGTTATTCATTGCTGTTACTCTGCTTTCAGCATAAGACAGGTTCTTCCCTTGGAAAGTAAGTACTTTTTCTCTCACATCATTCATTACCCTATTCCCAATGAGTGTTTCCTTGTCCTCAATATTGAAGGCTATCACCTTTTTTTTCTTCCTTAAAAATTAAACTTTCCAATATTTTAAAACATAGGGTGGAGGTTTAACCAAAACGATATGTTTTATCAACGAGATTGTCGTTATTGTCGAGAATATGTTACACAATTCAAATTTAGGTTTGAATTTTCATATTTCAATCTTTACCCTTCGTTGTTGAAACGGT

Coding sequence (CDS)

ATGCCAACTCCACTTAAGCTCACCAATGGCGCCATCCCTTGCGTCGTTTTCCCGGTGGCGGGTTCGAATAAACTGCAGCCGAAGACAATTTTCAGAGCTTCCCCGCCATTTCGCGTCTCAAAGCCGAATAACATTTTTGTTAGTCGGAACCCTAGCATCCGACAATGCCTTAACAATGCCGAAATTAGCGCCAATGATCCATTGAAATCGGAAAATGGCTTTTCCAATCATGAAACTGAAGGTTCGATGGAAAAGAATGAAAATCATAAAAAACATCCGCGAAAATCAATCGAGGTGCTGGATAAATTGAGGAGATATGGAGTTTCTGGAATATTGTCTTATGGATTGTTGAATACAGTCTACTATCTTACAACATTTCTTGTTGTGTGA

Protein sequence

MPTPLKLTNGAIPCVVFPVAGSNKLQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNAEISANDPLKSENGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTVYYLTTFLVV

Homology

[Close]

BLAST of Cp4.1LG01g10050 vs. NCBI nr
Match: XP_023534257.1 (uncharacterized protein LOC111795864 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 254 bits (648), Expect = 1.19e-83
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MPTPLKLTNGAIPCVVFPVAGSNKLQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA 60
           MPTPLKLTNGAIPCVVFPVAGSNKLQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA
Sbjct: 1   MPTPLKLTNGAIPCVVFPVAGSNKLQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA 60

Query: 61  EISANDPLKSENGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 120
           EISANDPLKSENGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV
Sbjct: 61  EISANDPLKSENGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 120

Query: 121 YYLTTFLVV 129
           YYLTTFLVV
Sbjct: 121 YYLTTFLVV 129

[Close]

BLAST of Cp4.1LG01g10050 vs. NCBI nr
Match: XP_023534249.1 (uncharacterized protein LOC111795864 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 254 bits (648), Expect = 1.09e-82
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MPTPLKLTNGAIPCVVFPVAGSNKLQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA 60
           MPTPLKLTNGAIPCVVFPVAGSNKLQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA
Sbjct: 1   MPTPLKLTNGAIPCVVFPVAGSNKLQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA 60

Query: 61  EISANDPLKSENGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 120
           EISANDPLKSENGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV
Sbjct: 61  EISANDPLKSENGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 120

Query: 121 YYLTTFLVV 129
           YYLTTFLVV
Sbjct: 121 YYLTTFLVV 129

[Close]

BLAST of Cp4.1LG01g10050 vs. NCBI nr
Match: XP_022983937.1 (uncharacterized protein LOC111482401 isoform X2 [Cucurbita maxima])

HSP 1 Score: 250 bits (639), Expect = 2.78e-82
Identity = 127/129 (98.45%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MPTPLKLTNGAIPCVVFPVAGSNKLQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA 60
           MPTPLKLTNGAIPCVVFPVAGSN+LQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA
Sbjct: 1   MPTPLKLTNGAIPCVVFPVAGSNELQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA 60

Query: 61  EISANDPLKSENGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 120
           EISANDPLKSE+GFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV
Sbjct: 61  EISANDPLKSESGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 120

Query: 121 YYLTTFLVV 129
           YYLTTFLVV
Sbjct: 121 YYLTTFLVV 129

[Close]

BLAST of Cp4.1LG01g10050 vs. NCBI nr
Match: XP_022983929.1 (uncharacterized protein LOC111482401 isoform X1 [Cucurbita maxima])

HSP 1 Score: 250 bits (639), Expect = 9.39e-82
Identity = 127/129 (98.45%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MPTPLKLTNGAIPCVVFPVAGSNKLQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA 60
           MPTPLKLTNGAIPCVVFPVAGSN+LQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA
Sbjct: 1   MPTPLKLTNGAIPCVVFPVAGSNELQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA 60

Query: 61  EISANDPLKSENGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 120
           EISANDPLKSE+GFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV
Sbjct: 61  EISANDPLKSESGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 120

Query: 121 YYLTTFLVV 129
           YYLTTFLVV
Sbjct: 121 YYLTTFLVV 129

[Close]

BLAST of Cp4.1LG01g10050 vs. NCBI nr
Match: KAG6601085.1 (hypothetical protein SDJN03_06318, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 245 bits (626), Expect = 2.65e-80
Identity = 125/129 (96.90%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MPTPLKLTNGAIPCVVFPVAGSNKLQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA 60
           MPTPLKLTNGAIPCVVFPVAGSNKLQPKTIFRASPPFRVSKP NIFVSRNPSIRQCL+NA
Sbjct: 1   MPTPLKLTNGAIPCVVFPVAGSNKLQPKTIFRASPPFRVSKPINIFVSRNPSIRQCLDNA 60

Query: 61  EISANDPLKSENGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 120
           EISANDPLKSENGFSNHETEGSMEKNENH+KHP+KSIEVLDKLRRYGVSGILSYGLLNTV
Sbjct: 61  EISANDPLKSENGFSNHETEGSMEKNENHQKHPQKSIEVLDKLRRYGVSGILSYGLLNTV 120

Query: 121 YYLTTFLVV 129
           YYLTTFLVV
Sbjct: 121 YYLTTFLVV 129

[Close]

BLAST of Cp4.1LG01g10050 vs. ExPASy TrEMBL
Match: A0A6J1J0R3 (uncharacterized protein LOC111482401 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482401 PE=4 SV=1)

HSP 1 Score: 250 bits (639), Expect = 1.35e-82
Identity = 127/129 (98.45%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MPTPLKLTNGAIPCVVFPVAGSNKLQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA 60
           MPTPLKLTNGAIPCVVFPVAGSN+LQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA
Sbjct: 1   MPTPLKLTNGAIPCVVFPVAGSNELQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA 60

Query: 61  EISANDPLKSENGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 120
           EISANDPLKSE+GFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV
Sbjct: 61  EISANDPLKSESGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 120

Query: 121 YYLTTFLVV 129
           YYLTTFLVV
Sbjct: 121 YYLTTFLVV 129

[Close]

BLAST of Cp4.1LG01g10050 vs. ExPASy TrEMBL
Match: A0A6J1J900 (uncharacterized protein LOC111482401 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482401 PE=4 SV=1)

HSP 1 Score: 250 bits (639), Expect = 4.55e-82
Identity = 127/129 (98.45%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MPTPLKLTNGAIPCVVFPVAGSNKLQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA 60
           MPTPLKLTNGAIPCVVFPVAGSN+LQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA
Sbjct: 1   MPTPLKLTNGAIPCVVFPVAGSNELQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA 60

Query: 61  EISANDPLKSENGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 120
           EISANDPLKSE+GFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV
Sbjct: 61  EISANDPLKSESGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 120

Query: 121 YYLTTFLVV 129
           YYLTTFLVV
Sbjct: 121 YYLTTFLVV 129

[Close]

BLAST of Cp4.1LG01g10050 vs. ExPASy TrEMBL
Match: A0A6J1GY06 (uncharacterized protein LOC111458238 OS=Cucurbita moschata OX=3662 GN=LOC111458238 PE=4 SV=1)

HSP 1 Score: 244 bits (623), Expect = 3.67e-80
Identity = 125/129 (96.90%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   MPTPLKLTNGAIPCVVFPVAGSNKLQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA 60
           MPTPLKLTNGAIPCVVFPVAGSNKLQPKTIF ASPPFRVSKP NIFVSRNPSIRQCLNNA
Sbjct: 1   MPTPLKLTNGAIPCVVFPVAGSNKLQPKTIFIASPPFRVSKPINIFVSRNPSIRQCLNNA 60

Query: 61  EISANDPLKSENGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 120
           EISANDPLKSENGFSNHETEGSMEKNENH+KHP+KSIEVLDKLRRYGVSGILSYGLLNTV
Sbjct: 61  EISANDPLKSENGFSNHETEGSMEKNENHQKHPQKSIEVLDKLRRYGVSGILSYGLLNTV 120

Query: 121 YYLTTFLVV 129
           YYLTTFLVV
Sbjct: 121 YYLTTFLVV 129

[Close]

BLAST of Cp4.1LG01g10050 vs. ExPASy TrEMBL
Match: A0A1S3BDD7 (uncharacterized protein LOC103488806 isoform X5 OS=Cucumis melo OX=3656 GN=LOC103488806 PE=4 SV=1)

HSP 1 Score: 140 bits (352), Expect = 3.76e-39
Identity = 75/97 (77.32%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 36  PFRVSKPNN---IFVSRNPSIRQCLNNAEISANDPLKSENGFSNHETEGSMEKNENHKKH 95
           P R S P +     VSRNPS+R CL+NA+ISANDPLKSE+ FSNHETEGSMEKNEN +KH
Sbjct: 24  PRRFSPPQSRIRFSVSRNPSVRLCLSNAKISANDPLKSEDDFSNHETEGSMEKNENRQKH 83

Query: 96  PRKSIEVLDKLRRYGVSGILSYGLLNTVYYLTTFLVV 129
           P+KS EVLDKLRRYG+SGILSYGLLNT YYLTTFLVV
Sbjct: 84  PQKSNEVLDKLRRYGLSGILSYGLLNTAYYLTTFLVV 120

[Close]

BLAST of Cp4.1LG01g10050 vs. ExPASy TrEMBL
Match: A0A5A7SW01 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00960 PE=4 SV=1)

HSP 1 Score: 138 bits (347), Expect = 1.57e-38
Identity = 84/130 (64.62%), Postives = 91/130 (70.00%), Query Frame = 0


Query: 1   MPTPLKLTNGAIPCVVFPVAGSNKLQPKTIFRASPP-FRVSKPNNIFVSRNPSIRQCLNN 60
           M TP KLTNG IPCV FP   S +LQ K+I RASPP     +PN                
Sbjct: 1   MLTPPKLTNGNIPCVAFP--DSIELQSKSISRASPPVLSPPEPNK--------------- 60

Query: 61  AEISANDPLKSENGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNT 120
               ANDPLKSE+ FSNHETEGSMEKNEN +KHP+KS EVLDKLRRYG+SGILSYGLLNT
Sbjct: 61  ----ANDPLKSEDDFSNHETEGSMEKNENRQKHPQKSNEVLDKLRRYGLSGILSYGLLNT 109

Query: 121 VYYLTTFLVV 129
            YYLTTFLVV
Sbjct: 121 AYYLTTFLVV 109

[Close]

BLAST of Cp4.1LG01g10050 vs. TAIR 10
Match: AT2G38695.1 (unknown protein; Has 65 Blast hits to 65 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 57.8 bits (138), Expect = 7.6e-09
Identity = 38/69 (55.07%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 62  ISANDPLKSENGFSNHETEGSM-EKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 121
           +S N   KS+        EG M +KN   KK+P  S E+L KL+RYG+SGILSYGLLNTV
Sbjct: 52  LSHNVSNKSDAEAERSCDEGEMLDKNRISKKNPFVSEELLKKLKRYGLSGILSYGLLNTV 111

Query: 122 YYLTTFLVV 130
           YY T FL+V
Sbjct: 112 YYSTAFLLV 120

[Close]

BLAST of Cp4.1LG01g10050 vs. TAIR 10
Match: AT2G38695.2 (unknown protein; Has 54 Blast hits to 54 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.8 bits (138), Expect = 7.6e-09
Identity = 38/69 (55.07%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 62  ISANDPLKSENGFSNHETEGSM-EKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 121
           +S N   KS+        EG M +KN   KK+P  S E+L KL+RYG+SGILSYGLLNTV
Sbjct: 52  LSHNVSNKSDAEAERSCDEGEMLDKNRISKKNPFVSEELLKKLKRYGLSGILSYGLLNTV 111

Query: 122 YYLTTFLVV 130
           YY T FL+V
Sbjct: 112 YYSTAFLLV 120

[Close]

BLAST of Cp4.1LG01g10050 vs. TAIR 10
Match: AT2G38695.3 (unknown protein; Has 56 Blast hits to 54 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.8 bits (138), Expect = 7.6e-09
Identity = 38/69 (55.07%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 62  ISANDPLKSENGFSNHETEGSM-EKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 121
           +S N   KS+        EG M +KN   KK+P  S E+L KL+RYG+SGILSYGLLNTV
Sbjct: 52  LSHNVSNKSDAEAERSCDEGEMLDKNRISKKNPFVSEELLKKLKRYGLSGILSYGLLNTV 111

Query: 122 YYLTTFLVV 130
           YY T FL+V
Sbjct: 112 YYSTAFLLV 120

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g10050 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g10050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023534257.1	1.19e-83	100.00	uncharacterized protein LOC111795864 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023534249.1	1.09e-82	100.00	uncharacterized protein LOC111795864 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022983937.1	2.78e-82	98.45	uncharacterized protein LOC111482401 isoform X2 [Cucurbita maxima]	[more]
XP_022983929.1	9.39e-82	98.45	uncharacterized protein LOC111482401 isoform X1 [Cucurbita maxima]	[more]
KAG6601085.1	2.65e-80	96.90	hypothetical protein SDJN03_06318, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cp4.1LG01g10050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J0R3	1.35e-82	98.45	uncharacterized protein LOC111482401 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1J900	4.55e-82	98.45	uncharacterized protein LOC111482401 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1GY06	3.67e-80	96.90	uncharacterized protein LOC111458238 OS=Cucurbita moschata OX=3662 GN=LOC1114582...	[more]
A0A1S3BDD7	3.76e-39	77.32	uncharacterized protein LOC103488806 isoform X5 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7SW01	1.57e-38	64.62	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Cp4.1LG01g10050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38695.1	7.6e-09	55.07	unknown protein; Has 65 Blast hits to 65 proteins in 18 species: Archae - 0; Bac...	[more]
AT2G38695.2	7.6e-09	55.07	unknown protein; Has 54 Blast hits to 54 proteins in 13 species: Archae - 0; Bac...	[more]
AT2G38695.3	7.6e-09	55.07	unknown protein; Has 56 Blast hits to 54 proteins in 13 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..94
None	No IPR available	PANTHER	PTHR34370:SF2	GAG-POL POLYPROTEIN/RETROTRANSPOSON	coord: 25..129
None	No IPR available	PANTHER	PTHR34370	OS04G0600100 PROTEIN	coord: 25..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g10050.1	Cp4.1LG01g10050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane