Cp4.1LG01g09630 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g09630
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionDNA-directed RNA polymerases II and V subunit 8A-like
LocationCp4.1LG01: 4226246 .. 4228075 (+)
RNA-Seq ExpressionCp4.1LG01g09630
SyntenyCp4.1LG01g09630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCATTTGTAGGAGTAAATTCTCCATAAACATGGCGGAGCTTCTATTTGATGATATTTTCAAGGTCTAGTGCGTCAACCCAGATGGTAAAAAGTATGATAAAGGTACTTTCATGAAGCTTGTAACTGCTCTCCATTCTTTTGTAGACAGTAACTTCTGCACCATCTTGACTTTGCTGTGAATGATTTGATGTGATGTTTATTGGGTGCATAAAATTGTTCTTATAGTTTCTAGAATTGAAGCACGGAGTGAGAAGCTTTCCATGTATATGCTGCTGGATGTAAATACAGAGATATATCCAATTGATGAAGGTGACAAGATTCTGATGGTCCTGTCTCCTACGCTGAATTATGATGGAGCTCCTGTTACCAGCTATAGTGGTCAAGTAATGTTTCTCCCCTCAATGTTTAATTGAATTTCATACAATCTTGGTGCTATCTGGTAGTCGTTTCATGTCTCTTCATTGTTTAAAAGAACACTCAGAAACACCTTGCTGCCAGATATCTGCATCCATATGTATCTTATAGATTCTAAAAGAAACTACCAACGATTTCATAATCTTTCTCTGATGCTGAAATTTTGGAGAAGGATTTTACCTAGCGATCTGTAATAGCTCATGTAATAGCTCAAGTTCACCACTAGAACACATTGTCCTCTTCGATTTTTCCTTTCGGGCTTCCAAACATATCTCCTAGGGAGAGGTTTCCACACCCTTATAAGGAATGTTTTGTTCCCCTCTCCAACTGATGTGGAGTCTCACAATCCATCCCCCTTCGAGGCCCGACGTCCATGCTAGCACTCGATCAACTCTCCAATCGATGGTAGGATCTCACAATCCACCTCTCTTTGAGGTCCAACGTCCTCGCTGCCACACTGTTTGATGTCCACCCCCTTCGGGGCTTAGTGTCCTCACTCAATGGCACACCGCCCAGTGTCCATCCCCCTAGGGGCTCAGTGTCCTCGCTGGCACACCGCCCTGTATCTGGCTTTGATACTATTTGTAATGGCCCAGACCCATCAATAGCAATAGCAGGTATTGTCCTCTTTGGACTTTCCCTTTTGGACTTCTCCTCAAATTTTTAAAACGTATCTGCTAATAAGAGGTTTTCACGCTCTTATAAGAAATGCTCCGTTCCCCTCTCCAACCAACGTGGGATCTCACCGTTTCTATAAACTTTTCATAAAGTAAAAAACAGAACAGTGACTACAAGCAAACAGTTTTATGTTCTAAAAACAAAATTATGCAAATGTTTCTTAGTATGGGAAGTGCCGAGTAGGCACTCATATCAAGCTCAAGCCCGTAAAGATGGTGAACATAATTGAAATCTGCGGAGTAATATTTTTGAACTAAACTTAAGTTGTTGCAGGAAGGGAAGAAATCACTAGCAGATAAGTTCGAGTATATCATGCATGGGAAGCTGTACAAACTCGCAGATGAAGGCTCAGGATCAGACTTGAAAGTGTAAGTGAATTGCCATGATTTTGCCCACCCATTTCTGCTACTGATTTTCCTAAAAGTCTAAGTGGAAGTACTTTATGCATGATTCTAACTCGATTCAAAAAAACATATTTTGATGTCGGAATTGGGTGTATTTTACAGAGAGGTTTATGCATCTTTTGGAGGACTTCAAATGATGTTGAAGGGAGATCCCCTCCACTGTGCCAAATTCAGGGTAGATCAGAACATGTTCTTGCTCCTCCGAAAGCTCACATGAACCTCAACAATCTCTCCTAATTATGAATTATAATTCTAGATAACTTATGAATTGATTGAAGGCCTTCTTTAATTTGTAAGCTTGTGTGAAGCAGTATAATTAATACGAAATGTTGT

mRNA sequence

TGCATTTGTAGGAGTAAATTCTCCATAAACATGGCGGAGCTTCTATTTGATGATATTTTCAAGGTCTAGTGCGTCAACCCAGATGGTAAAAAGTATGATAAAGTTTCTAGAATTGAAGCACGGAGTGAGAAGCTTTCCATGTATATGCTGCTGGATGTAAATACAGAGATATATCCAATTGATGAAGGTGACAAGATTCTGATGGTCCTGTCTCCTACGCTGAATTATGATGGAGCTCCTGTTACCAGCTATAGTGGTCAAGAAGGGAAGAAATCACTAGCAGATAAGTTCGAGTATATCATGCATGGGAAGCTGTACAAACTCGCAGATGAAGGCTCAGGATCAGACTTGAAAGTAGAGGTTTATGCATCTTTTGGAGGACTTCAAATGATGTTGAAGGGAGATCCCCTCCACTGTGCCAAATTCAGGGTAGATCAGAACATGTTCTTGCTCCTCCGAAAGCTCACATGAACCTCAACAATCTCTCCTAATTATGAATTATAATTCTAGATAACTTATGAATTGATTGAAGGCCTTCTTTAATTTGTAAGCTTGTGTGAAGCAGTATAATTAATACGAAATGTTGT

Coding sequence (CDS)

ATGTATATGCTGCTGGATGTAAATACAGAGATATATCCAATTGATGAAGGTGACAAGATTCTGATGGTCCTGTCTCCTACGCTGAATTATGATGGAGCTCCTGTTACCAGCTATAGTGGTCAAGAAGGGAAGAAATCACTAGCAGATAAGTTCGAGTATATCATGCATGGGAAGCTGTACAAACTCGCAGATGAAGGCTCAGGATCAGACTTGAAAGTAGAGGTTTATGCATCTTTTGGAGGACTTCAAATGATGTTGAAGGGAGATCCCCTCCACTGTGCCAAATTCAGGGTAGATCAGAACATGTTCTTGCTCCTCCGAAAGCTCACATGA

Protein sequence

MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLYKLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKLT
Homology
[Close]
BLAST of Cp4.1LG01g09630 vs. ExPASy Swiss-Prot
Match: O81097 (DNA-directed RNA polymerases II and V subunit 8A OS=Arabidopsis thaliana OX=3702 GN=NRPB8A PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.6e-31
Identity = 65/109 (59.63%), Postives = 80/109 (73.39%), Query Frame = 0 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           M+M LDVNTE+YP+  GDK  + L+PTLN DG P T Y     KK+LADK+EYIMHGKLY
Sbjct: 39  MFMHLDVNTEVYPLAVGDKFTLALAPTLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLY 98

Query: 61  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKL 110
           K++ E  G   K E+Y SFGGL M+LKGDP H + F +DQ +FLL+RKL
Sbjct: 99  KIS-ERDGKTPKAELYVSFGGLLMLLKGDPAHISHFELDQRLFLLMRKL 146

[Close]
BLAST of Cp4.1LG01g09630 vs. ExPASy Swiss-Prot
Match: Q9M1A8 (DNA-directed RNA polymerases II, IV and V subunit 8B OS=Arabidopsis thaliana OX=3702 GN=NRPB8B PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.3e-30
Identity = 63/109 (57.80%), Postives = 80/109 (73.39%), Query Frame = 0 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           M+M LDVNTE+YP+  GDK  + ++PTLN DG P T Y     KK+LADK+EYIMHGKLY
Sbjct: 39  MFMHLDVNTEVYPLAVGDKFTLAMAPTLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLY 98

Query: 61  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKL 110
           K++ E  G   K E+Y SFGGL M+L+GDP H + F +DQ +FLL+RKL
Sbjct: 99  KIS-ERDGKTPKAELYVSFGGLLMLLQGDPAHISHFELDQRLFLLMRKL 146

[Close]
BLAST of Cp4.1LG01g09630 vs. ExPASy Swiss-Prot
Match: Q19826 (Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Caenorhabditis elegans OX=6239 GN=rpb-8 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-18
Identity = 43/109 (39.45%), Postives = 73/109 (66.97%), Query Frame = 0 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           M +++D+N++IYP+ + DK+ +VL+ TL  DG         + +     ++EY+M+GK+Y
Sbjct: 37  MELIIDINSQIYPLKQNDKVRLVLATTLREDGLADEGEYDPKAEYPRIKQYEYVMYGKVY 96

Query: 61  KLADEGSGSD-LKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRK 109
           +L D+ +G+D  K+  YASFGGL M LKG+ ++   F VD N++LL++K
Sbjct: 97  RLEDDDTGTDGGKLAAYASFGGLLMRLKGEAINLHGFEVDMNLYLLMKK 145

[Close]
BLAST of Cp4.1LG01g09630 vs. ExPASy Swiss-Prot
Match: A8XT81 (Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Caenorhabditis briggsae OX=6238 GN=rpb-8 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.4e-18
Identity = 43/109 (39.45%), Postives = 72/109 (66.06%), Query Frame = 0 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           M +++D+N++IYP+ + DK  +VL+ TL  DG         + +     ++EY+M+GK+Y
Sbjct: 37  MELIIDINSQIYPLKQNDKFRLVLATTLREDGLADEGEYDPKAEYPRIKQYEYVMYGKVY 96

Query: 61  KLADEGSGSD-LKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRK 109
           +L D+ SG+D  ++  YASFGGL M LKG+ ++   F VD N++LL++K
Sbjct: 97  RLEDDDSGTDGGQLAAYASFGGLLMRLKGEAINLHGFEVDMNLYLLMKK 145

[Close]
BLAST of Cp4.1LG01g09630 vs. ExPASy Swiss-Prot
Match: Q54YW8 (DNA-directed RNA polymerases I, II, and III subunit rpabc3 OS=Dictyostelium discoideum OX=44689 GN=polr2h PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.7e-17
Identity = 46/108 (42.59%), Postives = 71/108 (65.74%), Query Frame = 0 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           M + +D+ T IYP+   ++  MVL+ +LN DG+   S S    K SLADK++Y+M+GK++
Sbjct: 37  MDLQIDIATHIYPLGH-ERFKMVLASSLNLDGSSDNSGSYDTNKPSLADKYDYVMYGKIF 96

Query: 61  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRK 109
           K   E S S  KV V+ASFGGL ++L+GDP +     +D  ++LL++K
Sbjct: 97  KYQKENSSS--KVSVFASFGGLLVLLQGDPRYLPGIELDARIYLLIKK 141

[Close]
BLAST of Cp4.1LG01g09630 vs. NCBI nr
Match: XP_022983196.1 (DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP_022983203.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP_022983212.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP_022983221.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP_022983229.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima])

HSP 1 Score: 223 bits (569), Expect = 4.83e-73
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY
Sbjct: 37  MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 96

Query: 61  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKLT 110
           KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKLT
Sbjct: 97  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKLT 146

[Close]
BLAST of Cp4.1LG01g09630 vs. NCBI nr
Match: KAG6600626.1 (DNA-directed RNA polymerases II, IV and V subunit 8B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031262.1 DNA-directed RNA polymerases II, IV and V subunit 8B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 220 bits (561), Expect = 8.00e-72
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVT YSGQ+GKKSLADKFEYIMHGKLY
Sbjct: 37  MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTGYSGQKGKKSLADKFEYIMHGKLY 96

Query: 61  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKLT 110
           KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKLT
Sbjct: 97  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKLT 146

[Close]
BLAST of Cp4.1LG01g09630 vs. NCBI nr
Match: XP_022942165.1 (DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita moschata])

HSP 1 Score: 216 bits (551), Expect = 2.68e-70
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 0 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMH KLY
Sbjct: 37  MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHRKLY 96

Query: 61  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKL 109
           KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHC KFRVDQNMFLLLRKL
Sbjct: 97  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCVKFRVDQNMFLLLRKL 145

[Close]
BLAST of Cp4.1LG01g09630 vs. NCBI nr
Match: XP_022929200.1 (DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita moschata] >XP_022929202.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita moschata] >XP_022985172.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP_023551974.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita pepo subsp. pepo] >KAG6577274.1 DNA-directed RNA polymerases II, IV and V subunit 8B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015358.1 DNA-directed RNA polymerases II, IV and V subunit 8B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 216 bits (549), Expect = 5.23e-70
Identity = 104/109 (95.41%), Postives = 109/109 (100.00%), Query Frame = 0 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           MYMLLDVNTEIYPIDEG+KILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGK+Y
Sbjct: 37  MYMLLDVNTEIYPIDEGEKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKIY 96

Query: 61  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKL 109
           KL+DEGSGSDLKVEVYASFGGLQM+LKGDP+HCAKFRVDQNMFLLLRKL
Sbjct: 97  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKL 145

[Close]
BLAST of Cp4.1LG01g09630 vs. NCBI nr
Match: XP_038901286.1 (DNA-directed RNA polymerases II, IV and V subunit 8B-like [Benincasa hispida])

HSP 1 Score: 212 bits (540), Expect = 1.32e-68
Identity = 101/108 (93.52%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           MYMLLDVNTEIYPIDEG+KILMVLSPTLNYDGAPVTSY+GQEGKKSLADKFEYIMHGK+Y
Sbjct: 37  MYMLLDVNTEIYPIDEGEKILMVLSPTLNYDGAPVTSYTGQEGKKSLADKFEYIMHGKIY 96

Query: 61  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRK 108
           KL+D+GSGSDLKVEVYASFGGLQM+LKGDP+HCAKFRVDQNMFLLLRK
Sbjct: 97  KLSDDGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRK 144

[Close]
BLAST of Cp4.1LG01g09630 vs. ExPASy TrEMBL
Match: A0A6J1J6Q9 (DNA-directed RNA polymerases II, IV and V subunit 8B-like OS=Cucurbita maxima OX=3661 GN=LOC111481850 PE=3 SV=1)

HSP 1 Score: 223 bits (569), Expect = 2.34e-73
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY
Sbjct: 37  MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 96

Query: 61  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKLT 110
           KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKLT
Sbjct: 97  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKLT 146

[Close]
BLAST of Cp4.1LG01g09630 vs. ExPASy TrEMBL
Match: A0A6J1FVR2 (DNA-directed RNA polymerases II, IV and V subunit 8B-like OS=Cucurbita moschata OX=3662 GN=LOC111447307 PE=3 SV=1)

HSP 1 Score: 216 bits (551), Expect = 1.30e-70
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 0 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMH KLY
Sbjct: 37  MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHRKLY 96

Query: 61  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKL 109
           KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHC KFRVDQNMFLLLRKL
Sbjct: 97  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCVKFRVDQNMFLLLRKL 145

[Close]
BLAST of Cp4.1LG01g09630 vs. ExPASy TrEMBL
Match: A0A6J1ETP8 (DNA-directed RNA polymerases II, IV and V subunit 8B-like OS=Cucurbita moschata OX=3662 GN=LOC111435865 PE=3 SV=1)

HSP 1 Score: 216 bits (549), Expect = 2.53e-70
Identity = 104/109 (95.41%), Postives = 109/109 (100.00%), Query Frame = 0 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           MYMLLDVNTEIYPIDEG+KILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGK+Y
Sbjct: 37  MYMLLDVNTEIYPIDEGEKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKIY 96

Query: 61  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKL 109
           KL+DEGSGSDLKVEVYASFGGLQM+LKGDP+HCAKFRVDQNMFLLLRKL
Sbjct: 97  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKL 145

[Close]
BLAST of Cp4.1LG01g09630 vs. ExPASy TrEMBL
Match: A0A6J1J454 (DNA-directed RNA polymerases II, IV and V subunit 8B-like OS=Cucurbita maxima OX=3661 GN=LOC111483257 PE=3 SV=1)

HSP 1 Score: 216 bits (549), Expect = 2.53e-70
Identity = 104/109 (95.41%), Postives = 109/109 (100.00%), Query Frame = 0 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           MYMLLDVNTEIYPIDEG+KILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGK+Y
Sbjct: 37  MYMLLDVNTEIYPIDEGEKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKIY 96

Query: 61  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKL 109
           KL+DEGSGSDLKVEVYASFGGLQM+LKGDP+HCAKFRVDQNMFLLLRKL
Sbjct: 97  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKL 145

[Close]
BLAST of Cp4.1LG01g09630 vs. ExPASy TrEMBL
Match: A0A0A0KZC2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G031020 PE=3 SV=1)

HSP 1 Score: 209 bits (531), Expect = 1.45e-67
Identity = 100/110 (90.91%), Postives = 107/110 (97.27%), Query Frame = 0 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           M+MLLDVNTEIYPIDEG+K+LMVLSPTLNYDG+PVTSY  QEGKKSLADKFEYIMHGK Y
Sbjct: 37  MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 96

Query: 61  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKLT 110
           KL+DEGSGSDLKVEVYASFGGLQM+LKGDP+HCAKFRVDQNMFLLLRKLT
Sbjct: 97  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKLT 146

[Close]
BLAST of Cp4.1LG01g09630 vs. TAIR 10
Match: AT1G54250.1 (RNA polymerase Rpb8 )

HSP 1 Score: 136.0 bits (341), Expect = 1.9e-32
Identity = 65/109 (59.63%), Postives = 80/109 (73.39%), Query Frame = 0 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           M+M LDVNTE+YP+  GDK  + L+PTLN DG P T Y     KK+LADK+EYIMHGKLY
Sbjct: 39  MFMHLDVNTEVYPLAVGDKFTLALAPTLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLY 98

Query: 61  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKL 110
           K++ E  G   K E+Y SFGGL M+LKGDP H + F +DQ +FLL+RKL
Sbjct: 99  KIS-ERDGKTPKAELYVSFGGLLMLLKGDPAHISHFELDQRLFLLMRKL 146

[Close]
BLAST of Cp4.1LG01g09630 vs. TAIR 10
Match: AT3G59600.1 (RNA polymerase Rpb8 )

HSP 1 Score: 133.7 bits (335), Expect = 9.3e-32
Identity = 63/109 (57.80%), Postives = 80/109 (73.39%), Query Frame = 0 

Query: 1   MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 60
           M+M LDVNTE+YP+  GDK  + ++PTLN DG P T Y     KK+LADK+EYIMHGKLY
Sbjct: 39  MFMHLDVNTEVYPLAVGDKFTLAMAPTLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLY 98

Query: 61  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKL 110
           K++ E  G   K E+Y SFGGL M+L+GDP H + F +DQ +FLL+RKL
Sbjct: 99  KIS-ERDGKTPKAELYVSFGGLLMLLQGDPAHISHFELDQRLFLLMRKL 146

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g09630 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O810972.6e-3159.63DNA-directed RNA polymerases II and V subunit 8A OS=Arabidopsis thaliana OX=3702... [more]
Q9M1A81.3e-3057.80DNA-directed RNA polymerases II, IV and V subunit 8B OS=Arabidopsis thaliana OX=... [more]
Q198261.2e-1839.45Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Caenorhab... [more]
A8XT813.4e-1839.45Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Caenorhab... [more]
Q54YW81.7e-1742.59DNA-directed RNA polymerases I, II, and III subunit rpabc3 OS=Dictyostelium disc... [more]
BLAST of Cp4.1LG01g09630 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022983196.14.83e-73100.00DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP... [more]
KAG6600626.18.00e-7298.18DNA-directed RNA polymerases II, IV and V subunit 8B, partial [Cucurbita argyros... [more]
XP_022942165.12.68e-7098.17DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita moschata][more]
XP_022929200.15.23e-7095.41DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita moschata] >... [more]
XP_038901286.11.32e-6893.52DNA-directed RNA polymerases II, IV and V subunit 8B-like [Benincasa hispida][more]
BLAST of Cp4.1LG01g09630 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1J6Q92.34e-73100.00DNA-directed RNA polymerases II, IV and V subunit 8B-like OS=Cucurbita maxima OX... [more]
A0A6J1FVR21.30e-7098.17DNA-directed RNA polymerases II, IV and V subunit 8B-like OS=Cucurbita moschata ... [more]
A0A6J1ETP82.53e-7095.41DNA-directed RNA polymerases II, IV and V subunit 8B-like OS=Cucurbita moschata ... [more]
A0A6J1J4542.53e-7095.41DNA-directed RNA polymerases II, IV and V subunit 8B-like OS=Cucurbita maxima OX... [more]
A0A0A0KZC21.45e-6790.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G031020 PE=3 SV=1[more]
BLAST of Cp4.1LG01g09630 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G54250.11.9e-3259.63RNA polymerase Rpb8 [more]
AT3G59600.19.3e-3257.80RNA polymerase Rpb8 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 106..110
NoneNo IPR availableGENE3D2.40.50.140coord: 1..110
e-value: 2.8E-38
score: 133.1
NoneNo IPR availablePANTHERPTHR10917:SF1DNA-DIRECTED RNA POLYMERASE I, IIcoord: 1..109
IPR005570RNA polymerase, Rpb8SMARTSM00658rpol8neucoord: 1..108
e-value: 3.2E-22
score: 89.8
IPR005570RNA polymerase, Rpb8PFAMPF03870RNA_pol_Rpb8coord: 1..108
e-value: 1.9E-35
score: 122.0
IPR005570RNA polymerase, Rpb8PIRSFPIRSF000779RPB8coord: 1..110
e-value: 7.4E-31
score: 105.1
IPR005570RNA polymerase, Rpb8PANTHERPTHR10917DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 1..109
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 1..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g09630.1Cp4.1LG01g09630.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005736 RNA polymerase I complex
cellular_component GO:0005665 RNA polymerase II, core complex
cellular_component GO:0005666 RNA polymerase III complex
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity