Cp4.1LG01g09470 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g09470
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Plus3 domain-containing protein
Location	Cp4.1LG01: 4153950 .. 4155926 (-)
RNA-Seq Expression	Cp4.1LG01g09470
Synteny	Cp4.1LG01g09470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGATCTAGAAAATTTACTTCTGGAGGCTGCTGGAAGAACTAATGCAGCAGGGAGGAATCGACACTCTCATCCACCATCTCGAAGACAGCGTGAGGGTTCATATTCTGATGCTGGAAGTGACTCTAGGGATGATGACTCAGATGATGATCGTGGTTATGCTAGCAGGAAGCCTTCTGGATCTCAGGTTCCTCTGAAGAAGAGGCTAGATCCTGCTGAAAGAGATGATGATGCGGGCAGCCAAGAAGAAGGGGACAACGAAGATGTTGGTTCAGATCGTGAGGGTGACAGCAGTAATGAATCTGACGTTGGGGATGATCTTTATAAAGATGATGATGACAGGCGCAAGCTTGCTGGTATGTCTGAACTTCAAAGGGAGATGATTCTTTCAGACAGAGCGTCAAAGAAGAATGATAAGCATTTATATGAAAGCTTAAGAGCTAAGAAGGATAAAGGGAAGACTGCTCCATCTCGGAAAGAGACCTCACCTCTCCCATCATCGCGTATTAGATCGTCTGCTAGATCTGCTGATAGAGCAGCTGCGAAAGATGATGCTTTAAATGAATTGCGTGCAAAAAGGTTGAAACAGCAGGATCCAGAAGCTCATCGTAAATTGAGAGATGCATCTAGAGGGAATGCAAATAATCGAAGGTTCTCACCGACAAAACGAAAGCCCTTCACTGCTCCTAGTTTGAGTAGCTCAAGTGAAAGTGAAAGTAGGTTTCAAAGTGAAGATGAAGAGTCTACAGGAGATGGCGGAATGATTGACAGTGATGATGAAAGATCCATGTCTGGTCTAAAAGGGCCAACATTTGAGGATATCAAGGAAATTACTATTCGTAGATCAAAGCTTGCAAAATGGTTAATGGAACCATTCTTTGAGGAGTTGATAGTTGGGTGCTTTGTGAGAGTTGGAATCGGGAGATCAAGATCCGGGTCTATCTACCGGCTCTGCTTGGTGCGCAATGTTGATGCAACAGAACCTGATCGTCAGTATAAGCTAGAGAACAAAATCACACATAAATATCTTAATGTTATTTGGGGAAACGAAAGTTCTGCTGCCAGGTGGCAGATGGCTATGATATCGGACTCTGCACCACTTGAGGATGAATATAAACAGTGGCTTAAGGAGGTAGAGCGAACTAATGGTCGGATGCTGAGCAAGCAGGATGTATTGGAAAAGAAGGAAGCTATACAGAAAGCCAACAACTTTGTCTACTCAGCGGCCACAGTGAAGCAGATGTTGCGAGAGAAAAAATCTGCTTCATCAAGGCCATTAAATATTGCAGCTGAGAAGGACCGGCTGAGGAGAGAGATGGACGTAGCACTAAGCAAAAATGATGAATCTGAGGTTGAGAGGATCAAGGCAAGGCTGCAGCAATTAGAGGCATCCAGGAGGTTGCAGATGAAAGATACCAAGGCAATTAGGTTAGTTGAGATGAACAGGAAGAACAGGGTGGAGAACTTCAAAAATGCATCAGAACTGAGACCCTTGAAAGACTTGAAAGCTGGAGAGGCCGGTTACGATCCCTTTTCAAGGAGATGGACCAGGTCAAGGAATTACTATGTTGGAAACGCTGGTGAAGCCAATGGGGCTGCGGAAGCAGGTGGCAACAGTGATAACGCAATGCCTGCATCAGAGACTAATAGAACAGGATCTGGTCGGACTGCAGAAGCTGGCATGGCAGCTACAGCAGCGGCTTTGGAAGCTGCTGCTGGGGCTGGAAAGTTGGTTGACACTAATGCTCCTGTAGATGGAGGTACAGAATCAAACTCGCTGCACAACTTTGAGCTGCCTATATCATTGGCTGTGCTTCAGAAATTTGGTGGACCCATGGGAGCTCAGGCTGGGTTCTTAGCAAGGAAACAGCAGATAGAAGCCACAGTTGGACGTCAAGTCCCTGAGAACGATGGGAGGCGGCATGCACTGACACTGACTGTTAGTGACTACAAGAGAAGAAGAGGGCTTCTTTGA

mRNA sequence

ATGGCAGATCTAGAAAATTTACTTCTGGAGGCTGCTGGAAGAACTAATGCAGCAGGGAGGAATCGACACTCTCATCCACCATCTCGAAGACAGCGTGAGGGTTCATATTCTGATGCTGGAAGTGACTCTAGGGATGATGACTCAGATGATGATCGTGGTTATGCTAGCAGGAAGCCTTCTGGATCTCAGGTTCCTCTGAAGAAGAGGCTAGATCCTGCTGAAAGAGATGATGATGCGGGCAGCCAAGAAGAAGGGGACAACGAAGATGTTGGTTCAGATCGTGAGGGTGACAGCAGTAATGAATCTGACGTTGGGGATGATCTTTATAAAGATGATGATGACAGGCGCAAGCTTGCTGGTATGTCTGAACTTCAAAGGGAGATGATTCTTTCAGACAGAGCGTCAAAGAAGAATGATAAGCATTTATATGAAAGCTTAAGAGCTAAGAAGGATAAAGGGAAGACTGCTCCATCTCGGAAAGAGACCTCACCTCTCCCATCATCGCGTATTAGATCGTCTGCTAGATCTGCTGATAGAGCAGCTGCGAAAGATGATGCTTTAAATGAATTGCGTGCAAAAAGGTTGAAACAGCAGGATCCAGAAGCTCATCGTAAATTGAGAGATGCATCTAGAGGGAATGCAAATAATCGAAGGTTCTCACCGACAAAACGAAAGCCCTTCACTGCTCCTAGTTTGAGTAGCTCAAGTGAAAGTGAAAGTAGGTTTCAAAGTGAAGATGAAGAGTCTACAGGAGATGGCGGAATGATTGACAGTGATGATGAAAGATCCATGTCTGGTCTAAAAGGGCCAACATTTGAGGATATCAAGGAAATTACTATTCGTAGATCAAAGCTTGCAAAATGGTTAATGGAACCATTCTTTGAGGAGTTGATAGTTGGGTGCTTTGTGAGAGTTGGAATCGGGAGATCAAGATCCGGGTCTATCTACCGGCTCTGCTTGGTGCGCAATGTTGATGCAACAGAACCTGATCGTCAGTATAAGCTAGAGAACAAAATCACACATAAATATCTTAATGTTATTTGGGGAAACGAAAGTTCTGCTGCCAGGTGGCAGATGGCTATGATATCGGACTCTGCACCACTTGAGGATGAATATAAACAGTGGCTTAAGGAGGTAGAGCGAACTAATGGTCGGATGCTGAGCAAGCAGGATGTATTGGAAAAGAAGGAAGCTATACAGAAAGCCAACAACTTTGTCTACTCAGCGGCCACAGTGAAGCAGATGTTGCGAGAGAAAAAATCTGCTTCATCAAGGCCATTAAATATTGCAGCTGAGAAGGACCGGCTGAGGAGAGAGATGGACGTAGCACTAAGCAAAAATGATGAATCTGAGGTTGAGAGGATCAAGGCAAGGCTGCAGCAATTAGAGGCATCCAGGAGGTTGCAGATGAAAGATACCAAGGCAATTAGGTTAGTTGAGATGAACAGGAAGAACAGGGTGGAGAACTTCAAAAATGCATCAGAACTGAGACCCTTGAAAGACTTGAAAGCTGGAGAGGCCGGTTACGATCCCTTTTCAAGGAGATGGACCAGGTCAAGGAATTACTATGTTGGAAACGCTGGTGAAGCCAATGGGGCTGCGGAAGCAGGTGGCAACAGTGATAACGCAATGCCTGCATCAGAGACTAATAGAACAGGATCTGGTCGGACTGCAGAAGCTGGCATGGCAGCTACAGCAGCGGCTTTGGAAGCTGCTGCTGGGGCTGGAAAGTTGGTTGACACTAATGCTCCTGTAGATGGAGGTACAGAATCAAACTCGCTGCACAACTTTGAGCTGCCTATATCATTGGCTGTGCTTCAGAAATTTGGTGGACCCATGGGAGCTCAGGCTGGGTTCTTAGCAAGGAAACAGCAGATAGAAGCCACAGTTGGACGTCAAGTCCCTGAGAACGATGGGAGGCGGCATGCACTGACACTGACTGTTAGTGACTACAAGAGAAGAAGAGGGCTTCTTTGA

Coding sequence (CDS)

ATGGCAGATCTAGAAAATTTACTTCTGGAGGCTGCTGGAAGAACTAATGCAGCAGGGAGGAATCGACACTCTCATCCACCATCTCGAAGACAGCGTGAGGGTTCATATTCTGATGCTGGAAGTGACTCTAGGGATGATGACTCAGATGATGATCGTGGTTATGCTAGCAGGAAGCCTTCTGGATCTCAGGTTCCTCTGAAGAAGAGGCTAGATCCTGCTGAAAGAGATGATGATGCGGGCAGCCAAGAAGAAGGGGACAACGAAGATGTTGGTTCAGATCGTGAGGGTGACAGCAGTAATGAATCTGACGTTGGGGATGATCTTTATAAAGATGATGATGACAGGCGCAAGCTTGCTGGTATGTCTGAACTTCAAAGGGAGATGATTCTTTCAGACAGAGCGTCAAAGAAGAATGATAAGCATTTATATGAAAGCTTAAGAGCTAAGAAGGATAAAGGGAAGACTGCTCCATCTCGGAAAGAGACCTCACCTCTCCCATCATCGCGTATTAGATCGTCTGCTAGATCTGCTGATAGAGCAGCTGCGAAAGATGATGCTTTAAATGAATTGCGTGCAAAAAGGTTGAAACAGCAGGATCCAGAAGCTCATCGTAAATTGAGAGATGCATCTAGAGGGAATGCAAATAATCGAAGGTTCTCACCGACAAAACGAAAGCCCTTCACTGCTCCTAGTTTGAGTAGCTCAAGTGAAAGTGAAAGTAGGTTTCAAAGTGAAGATGAAGAGTCTACAGGAGATGGCGGAATGATTGACAGTGATGATGAAAGATCCATGTCTGGTCTAAAAGGGCCAACATTTGAGGATATCAAGGAAATTACTATTCGTAGATCAAAGCTTGCAAAATGGTTAATGGAACCATTCTTTGAGGAGTTGATAGTTGGGTGCTTTGTGAGAGTTGGAATCGGGAGATCAAGATCCGGGTCTATCTACCGGCTCTGCTTGGTGCGCAATGTTGATGCAACAGAACCTGATCGTCAGTATAAGCTAGAGAACAAAATCACACATAAATATCTTAATGTTATTTGGGGAAACGAAAGTTCTGCTGCCAGGTGGCAGATGGCTATGATATCGGACTCTGCACCACTTGAGGATGAATATAAACAGTGGCTTAAGGAGGTAGAGCGAACTAATGGTCGGATGCTGAGCAAGCAGGATGTATTGGAAAAGAAGGAAGCTATACAGAAAGCCAACAACTTTGTCTACTCAGCGGCCACAGTGAAGCAGATGTTGCGAGAGAAAAAATCTGCTTCATCAAGGCCATTAAATATTGCAGCTGAGAAGGACCGGCTGAGGAGAGAGATGGACGTAGCACTAAGCAAAAATGATGAATCTGAGGTTGAGAGGATCAAGGCAAGGCTGCAGCAATTAGAGGCATCCAGGAGGTTGCAGATGAAAGATACCAAGGCAATTAGGTTAGTTGAGATGAACAGGAAGAACAGGGTGGAGAACTTCAAAAATGCATCAGAACTGAGACCCTTGAAAGACTTGAAAGCTGGAGAGGCCGGTTACGATCCCTTTTCAAGGAGATGGACCAGGTCAAGGAATTACTATGTTGGAAACGCTGGTGAAGCCAATGGGGCTGCGGAAGCAGGTGGCAACAGTGATAACGCAATGCCTGCATCAGAGACTAATAGAACAGGATCTGGTCGGACTGCAGAAGCTGGCATGGCAGCTACAGCAGCGGCTTTGGAAGCTGCTGCTGGGGCTGGAAAGTTGGTTGACACTAATGCTCCTGTAGATGGAGGTACAGAATCAAACTCGCTGCACAACTTTGAGCTGCCTATATCATTGGCTGTGCTTCAGAAATTTGGTGGACCCATGGGAGCTCAGGCTGGGTTCTTAGCAAGGAAACAGCAGATAGAAGCCACAGTTGGACGTCAAGTCCCTGAGAACGATGGGAGGCGGCATGCACTGACACTGACTGTTAGTGACTACAAGAGAAGAAGAGGGCTTCTTTGA

Protein sequence

MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPSGSQVPLKKRLDPAERDDDAGSQEEGDNEDVGSDREGDSSNESDVGDDLYKDDDDRRKLAGMSELQREMILSDRASKKNDKHLYESLRAKKDKGKTAPSRKETSPLPSSRIRSSARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANNRRFSPTKRKPFTAPSLSSSSESESRFQSEDEESTGDGGMIDSDDERSMSGLKGPTFEDIKEITIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMAMISDSAPLEDEYKQWLKEVERTNGRMLSKQDVLEKKEAIQKANNFVYSAATVKQMLREKKSASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQLEASRRLQMKDTKAIRLVEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGGNSDNAMPASETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFELPISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL

Homology

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BLAST of Cp4.1LG01g09470 vs. ExPASy Swiss-Prot
Match: Q9C950 (Protein RTF1 homolog OS=Arabidopsis thaliana OX=3702 GN=VIP5 PE=1 SV=1)

HSP 1 Score: 805.1 bits (2078), Expect = 6.1e-232
Identity = 460/664 (69.28%), Postives = 540/664 (81.33%), Query Frame = 0


Query: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS 60
           M DLENLLLEAAGRTN+AGR+R  HPPS R+REGSYSD  SDSR DDSD+DRGYASRKPS
Sbjct: 1   MGDLENLLLEAAGRTNSAGRSR--HPPSSRRREGSYSDGSSDSR-DDSDEDRGYASRKPS 60

Query: 61  GSQVPLKKRLDPAERDDDAGSQEEGDNEDVGSDREGDSSNESDVGDDLYKDDDDRRKLAG 120
           GSQVPLKKRL+ AER+D A ++ EG   D  SDREGDSS ESD GDDLYK+++DR+KLAG
Sbjct: 61  GSQVPLKKRLE-AEREDRA-ARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAG 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRAKKDKGKTAPSRKETSPLPSSR-IRSSARSADR 180
           M+E QREMILS+RA KK DK+  E LR+K++  KT  S+KET PLP+SR +RSSARSADR
Sbjct: 121 MTEFQREMILSERADKKGDKNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSADR 180

Query: 181 AAAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANNRRFSPTKRKPFTAPSLSSSSESE 240
           AAAKDDALNELRAKR+KQQDP A RKLRDAS+G + +R FS TKRKP  + +LSSSS+S+
Sbjct: 181 AAAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSTKRKPLASSNLSSSSQSD 240

Query: 241 SRFQSEDEESTGDGGMIDSDDERSMSGLKGPTFEDIKEITIRRSKLAKWLMEPFFEELIV 300
           S  +S+ ++   +GGM+DSDD+RS      PTFED+KE+TIRRSKLAKWLMEPFFEELIV
Sbjct: 241 SDSRSQSDDEGSNGGMLDSDDDRS----DVPTFEDVKEVTIRRSKLAKWLMEPFFEELIV 300

Query: 301 GCFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQM 360
           GCFVRVGIGRS+SG IYRLC V+NVDAT+PD+ YKLENK THKYLNV+WGNE+SAARWQM
Sbjct: 301 GCFVRVGIGRSKSGPIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWGNETSAARWQM 360

Query: 361 AMISDSAPLEDEYKQWLKEVERTNGRMLSKQDVLEKKEAIQKANNFVYSAATVKQMLREK 420
           AMISD  PLE+EY+QW++EVERTNGRM +KQD+ EKKEAIQ+ N+FVYSA TVKQML+EK
Sbjct: 361 AMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNSFVYSAETVKQMLQEK 420

Query: 421 KSASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQLEASRRLQMKDTKAIRLV 480
           KSAS RP+N+AAEKDRLR+E+++A SKNDE+ VERIK++++QL+ASR  +  D KA++L 
Sbjct: 421 KSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKSKIKQLDASRNKKGVDKKALKLA 480

Query: 481 EMNRKNRVENFKNASELRPL-KDLKAGEAGYDPFSRRWTRSRNYY----VGNAGEANGAA 540
           EMN+KNR ENFKNASE++ +   LKAGEAGYDPFSRRWTRS NYY     G  GE N AA
Sbjct: 481 EMNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKNKGKDGEENEAA 540

Query: 541 EAGGNSDNAMPASETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSL 600
            A         A ETN    G  A AG+ AT AALEAAA AGKL+DT AP+  G E N L
Sbjct: 541 VAA--------AVETN----GADAGAGVEATEAALEAAAEAGKLIDTRAPIGQGAEHNQL 600

Query: 601 HNFELPISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRR 659
           HNFEL +SL  LQK+GGP G Q  F+ARKQ  EATVG +V ENDG+RH LTLTVSDYKRR
Sbjct: 601 HNFELSLSLTALQKYGGPQGVQKAFMARKQLTEATVGCRVAENDGKRHGLTLTVSDYKRR 643

[Close]

BLAST of Cp4.1LG01g09470 vs. ExPASy Swiss-Prot
Match: A2AQ19 (RNA polymerase-associated protein RTF1 homolog OS=Mus musculus OX=10090 GN=Rtf1 PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-21
Identity = 171/662 (25.83%), Postives = 290/662 (43.81%), Query Frame = 0


Query: 39  AGSDSRDDDSDDDRGYASRKPS--------GSQVPLKKRLDPA------ERDDDAGSQ-- 98
           A SDS   DSDD+  + S K            +  +KK+ + A      +RD  A S   
Sbjct: 96  ASSDSETSDSDDEWTFGSNKNKKKGKTRKVEKKGAMKKQANKAASSGSSDRDSSAESSAP 155

Query: 99  EEGDNED-----VGSDREGDSSNESD-----VGDDLYKDDDDRRKLAGMSELQREMILSD 158
           EEG+  D       S  + DSS+E +      G+DL  D++DR +L  M+E +RE  L +
Sbjct: 156 EEGEVSDSESSSSSSSSDSDSSSEDEEFHDGYGEDLMGDEEDRARLEQMTEKEREQELFN 215

Query: 159 RASK----KNDKHLYESLRAKKDKGKTAPSRKETSPLPSSRIRSSARSADRAAAKDDALN 218
           R  K    K    + + L+  K K K    +K+       ++     S   +  K     
Sbjct: 216 RIEKREVLKRRFEIKKKLKTAKKKEKKEKKKKQEEEQEKKKLTQIQESQVTSHNK----- 275

Query: 219 ELRAKRLKQQD--PEAHRKLRDASRGNANNRRFSPTKRKPFTAPSLSSSSESESRFQSED 278
           E R+KR ++ D   +A  +L+       N       K++P     + S  E E       
Sbjct: 276 ERRSKRDEKLDKKSQAMEELKAEREKRKNRTAELLAKKQPLKTSEVYSDDEEEEDDDKSS 335

Query: 279 EESTGDGGMIDSDDERSMSGLKGPTF-----EDIKEITIRRSKLAKWLMEPFFEELIVGC 338
           E+S        SD+E     +   +      E++  + + R KL +W   PFF + + GC
Sbjct: 336 EKSDRSSRTSSSDEEEEKEEIPPKSQPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGC 395

Query: 339 FVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMAM 398
           FVR+GIG   S  +YR+  +  V   E  + Y+L    T+K L +  GN+    R  +  
Sbjct: 396 FVRIGIGNHNSKPVYRVAEITGV--VETAKVYQLGGTRTNKGLQLRHGNDQRVFR--LEF 455

Query: 399 ISDSAPLEDEYKQWLKEVERTNGRMLSKQDVLEKKE-AIQKANNFVYSAATVKQMLREKK 458
           +S+    E E+ +W KE   + G  L   D + KKE +I++A N+ ++   ++++++EK+
Sbjct: 456 VSNQEFTESEFMKW-KEAMFSAGMQLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEKE 515

Query: 459 SASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQL-EASRRLQMKDTKAIRLV 518
                P N A +K +L +E  +A    D+ + ++I+ +L +L E +  L  + TK I  +
Sbjct: 516 RFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAI 575

Query: 519 E-MNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGG 578
             +N++NR  N   + +    +         DPF+RR  + +   V N+ +   A +A  
Sbjct: 576 SYINQRNREWNIVESEKALVAESHNMRNQQMDPFTRR--QCKPTIVSNSRDP--AVQA-- 635

Query: 579 NSDNAMPASETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDTNAPV--DGGTESNSLHN 638
               A+ A    + GSG   +       A  E + G GK  D N+    D   +   +H+
Sbjct: 636 ----AILAQLNAKYGSGVLPD-------APKEMSKGQGKDKDLNSKTASDLSEDLFKVHD 695

Query: 639 FELPISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRRRG 659
           F++ I L V               + + +  A   +  P  DG     +L + DYK+RRG
Sbjct: 696 FDVKIDLQV--------------PSSESKALAITSKAPPAKDGAPRR-SLNLEDYKKRRG 715

[Close]

BLAST of Cp4.1LG01g09470 vs. ExPASy Swiss-Prot
Match: Q92541 (RNA polymerase-associated protein RTF1 homolog OS=Homo sapiens OX=9606 GN=RTF1 PE=1 SV=4)

HSP 1 Score: 105.1 bits (261), Expect = 3.0e-21
Identity = 169/662 (25.53%), Postives = 289/662 (43.66%), Query Frame = 0


Query: 39  AGSDSRDDDSDDDRGYAS--RKPSGSQVPLKKR------------LDPAERDDDAGSQ-- 98
           A SDS   DSDD+  + S   K  G    ++K+               +++D  A S   
Sbjct: 91  ASSDSETSDSDDEWTFGSNKNKKKGKARKIEKKGTMKKQANKTASSGSSDKDSSAESSAP 150

Query: 99  EEG-----DNEDVGSDREGDSSNESD-----VGDDLYKDDDDRRKLAGMSELQREMILSD 158
           EEG     D+    S  + DSS+E +      G+DL  D++DR +L  M+E +RE  L +
Sbjct: 151 EEGEVSDSDSNSSSSSSDSDSSSEDEEFHDGYGEDLMGDEEDRARLEQMTEKEREQELFN 210

Query: 159 RASK----KNDKHLYESLRAKKDKGKTAPSRKETSPLPSSRIRSSARSADRAAAKDDALN 218
           R  K    K    + + L+  K K K    +K+       ++     S   +  K     
Sbjct: 211 RIEKREVLKRRFEIKKKLKTAKKKEKKEKKKKQEEEQEKKKLTQIQESQVTSHNK----- 270

Query: 219 ELRAKRLKQQD--PEAHRKLRDASRGNANNRRFSPTKRKPFTAPSLSSSSESESRFQSED 278
           E R+KR ++ D   +A  +L+       N       K++P     + S  E E       
Sbjct: 271 ERRSKRDEKLDKKSQAMEELKAEREKRKNRTAELLAKKQPLKTSEVYSDDEEEEEDDKSS 330

Query: 279 EESTGDGGMIDSDDERSMSGLKGPTF-----EDIKEITIRRSKLAKWLMEPFFEELIVGC 338
           E+S        SD+E     +   +      E++  + + R KL +W   PFF + + GC
Sbjct: 331 EKSDRSSRTSSSDEEEEKEEIPPKSQPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGC 390

Query: 339 FVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMAM 398
           FVR+GIG   S  +YR+  +  V   E  + Y+L    T+K L +  GN+    R  +  
Sbjct: 391 FVRIGIGNHNSKPVYRVAEITGV--VETAKVYQLGGTRTNKGLQLRHGNDQRVFR--LEF 450

Query: 399 ISDSAPLEDEYKQWLKEVERTNGRMLSKQDVLEKKE-AIQKANNFVYSAATVKQMLREKK 458
           +S+    E E+ +W KE   + G  L   D + KKE +I++A N+ ++   ++++++EK+
Sbjct: 451 VSNQEFTESEFMKW-KEAMFSAGMQLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEKE 510

Query: 459 SASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQL-EASRRLQMKDTKAIRLV 518
                P N A +K +L +E  +A    D+ + ++I+ +L +L E +  L  + TK I  +
Sbjct: 511 RFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAI 570

Query: 519 E-MNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGG 578
             +N++NR  N   + +    +         DPF+RR  + +   V N+ +   A +A  
Sbjct: 571 SYINQRNREWNIVESEKALVAESHNMKNQQMDPFTRR--QCKPTIVSNSRDP--AVQA-- 630

Query: 579 NSDNAMPASETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDTN--APVDGGTESNSLHN 638
               A+ A    + GSG   +       A  E + G GK  D N  +  D   +   +H+
Sbjct: 631 ----AILAQLNAKYGSGVLPD-------APKEMSKGQGKDKDLNSKSASDLSEDLFKVHD 690

Query: 639 FELPISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRRRG 659
           F++ I L V               + + +  A   +  P  DG     +L + DYK+RRG
Sbjct: 691 FDVKIDLQV--------------PSSESKALAITSKAPPAKDGAPRR-SLNLEDYKKRRG 710

[Close]

BLAST of Cp4.1LG01g09470 vs. ExPASy Swiss-Prot
Match: Q5RAD5 (RNA polymerase-associated protein RTF1 homolog (Fragment) OS=Pongo abelii OX=9601 GN=RTF1 PE=2 SV=2)

HSP 1 Score: 92.0 bits (227), Expect = 2.6e-17
Identity = 165/650 (25.38%), Postives = 287/650 (44.15%), Query Frame = 0


Query: 7   LLLEAAGRTNAAGRNRHSHPPSRRQREGSYSD----------AGSDSRDDDSDDDRGYAS 66
           +++++    + +  N     PS  +R+ S S+          A SDS   DSDD+  + S
Sbjct: 44  VVIDSDTEDSGSDENLDQELPSLAKRKRSDSEEKEPPVSQPAASSDSETSDSDDEWTFGS 103

Query: 67  --RKPSGSQVPLKKR------------LDPAERDDDAGSQ--EEG-----DNEDVGSDRE 126
              K  G    ++K+               +++D  A S   EEG     D+    S  +
Sbjct: 104 NKNKKKGKARKIEKKGTMKKQANKTASSGSSDKDSSAESSAPEEGEVSDSDSNSSSSSSD 163

Query: 127 GDSSNESD-----VGDDLYKDDDDRRKLAGMSELQREMILSDRASK----KNDKHLYESL 186
            DSS+E +      G+DL  D++DR +L  M+E +RE  L +R  K    K    + + L
Sbjct: 164 SDSSSEDEEFHDGYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKREVLKRRFEIKKKL 223

Query: 187 RAKKDKGKTAPSRKETSPLPSSRIRSSARSADRAAAKDDALNELRAKRLKQQD--PEAHR 246
           +  K K K    +K+       ++     S   +  K     E R+KR ++ D   +A  
Sbjct: 224 KTAKKKEKKEKKKKQEEEQEKKKLTQIQESQVTSHNK-----ERRSKRDEKLDKKSQAME 283

Query: 247 KLRDASRGNANNRRFS-PTKRKPFTAPSLSSSSESESRFQSEDEESTGDGGMIDSDDERS 306
           +L+ A R    NR      K++P     + S  E E       E+S        SD+E  
Sbjct: 284 ELK-AEREKRKNRTVELLAKKQPLKTSEVYSDDEEEEEDDKSSEKSDRSSRTSSSDEEEE 343

Query: 307 MSGLKGPTF-----EDIKEITIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSRSGSIYRL 366
              +   +      E++  + + R KL +W   PFF + + GCFVR+GIG   S  +YR+
Sbjct: 344 KEEIPPKSQPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRV 403

Query: 367 CLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMAMISDSAPLEDEYKQWLKE 426
             +  V   E  + Y+L    T+K L +  GN+    R  +  +S+    E E+ +W KE
Sbjct: 404 AEITGV--VETAKVYQLGGTRTNKGLQLRHGNDQRVFR--LEFVSNQEFTESEFMKW-KE 463

Query: 427 VERTNGRMLSKQDVLEKKE-AIQKANNFVYSAATVKQMLREKKSASSRPLNIAAEKDRLR 486
              + G  L   D + KKE +I++A N+ ++   ++++++EK+     P N A +K +L 
Sbjct: 464 AMFSAGMQLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLL 523

Query: 487 REMDVALSKNDESEVERIKARLQQL-EASRRLQMKDTKAIRLVE-MNRKNRVENFKNASE 546
           +E  +A    D+ + ++I+ +L +L E +  L  + TK I  +  +N++NR  N   + +
Sbjct: 524 KEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREWNIVESEK 583

Query: 547 LRPLKDLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGGNSDNAMPASETNRTGSG 604
               +         DPF+RR  + +   V N+ +   A +A      A+ A    + GSG
Sbjct: 584 ALVAESHNMKNQQMDPFTRR--QCKPTIVSNSRDP--AVQA------AILAQLNAKYGSG 643

[Close]

BLAST of Cp4.1LG01g09470 vs. ExPASy Swiss-Prot
Match: G5EBY0 (RNA polymerase-associated protein RTF1 homolog OS=Caenorhabditis elegans OX=6239 GN=rtfo-1 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.1e-14
Identity = 145/592 (24.49%), Postives = 262/592 (44.26%), Query Frame = 0


Query: 45  DDDSDDDRGYASRKPSGSQVPLKKRLDPAERDDDAGSQE----EGDNEDVGSDREGDSSN 104
           D DSD D G    KP  +        D +  D DA   +    +         R   SS+
Sbjct: 22  DSDSDSDAGPKPGKPLST--------DSSASDSDAEKPQAKPAKKKTLTKRKRRATGSSD 81

Query: 105 ESDVGDDLYKDDDDRRKLAGMSELQREMILSDRASKKNDKHLYESL------RAKK--DK 164
           +  V DDL+ D +D+ +   ++EL++E  + +R   + +    E +      +AKK  +K
Sbjct: 82  DDQVDDDLFADKEDKARWKKLTELEKEQEIFERMEARENAIAREEIAQQLAKKAKKSSEK 141

Query: 165 G-KTAPSRKETSPLPSSRIRSSARSADRAAAKDDALNELRAKRLKQQDPEA----HRKLR 224
           G KT   RK  S    +       S+D  +  D A +       K ++  A      K +
Sbjct: 142 GVKTEKRRKMNSGGSDAGSPKRKASSDSDSEMDAAFHRPSDINRKHKEKNAMDALKNKRK 201

Query: 225 DASRGNANNRRFSPTKRKPFTAPSLSSSSESESRFQSEDEESTGDGGMIDSDD--ERSMS 284
           +  + NA N   S        + S SSSS SES   S     +    + + D   ++ + 
Sbjct: 202 EIEKKNAKNEALSIDAVFGANSGSSSSSSSSESSRSSSSSRESSPERVSEKDKIVKKDVD 261

Query: 285 GLKGPTFEDIKEITIRRSKLAKWLMEPFFEELIVGCFVRVGIGR-SRSGSIYRLCLVRNV 344
           GL      +++   + R KL+  +  PFF+  +VGC+VR+G G+ S SGS YR+  +  V
Sbjct: 262 GL-----SELRRARLSRHKLSLMIHAPFFDSTVVGCYVRLGQGQMSGSGSKYRIWKIVGV 321

Query: 345 DATEPDRQYKLENKITHKYLNVIWGNESSAARWQMAMISDSAPLEDEYKQWLKEVERTNG 404
           +  E ++ Y+LE K T+K +     N  S   ++M  +S++   + E+ +WL   +R +G
Sbjct: 322 E--ESNKVYELEGKKTNKIIKC--QNGGSERPFRMQFVSNADFEQIEFDEWLLACKR-HG 381

Query: 405 RMLSKQDVLEKKEAIQKANNFVYSAATVKQMLREKKSASSRPLNIAAEKDRLRREMDVAL 464
            + +   + +KK+ I+KA N  YS   V  M++EK    + P N A  K    ++ ++A 
Sbjct: 382 NLPTVDIMDKKKQDIEKAINHKYSDKEVDLMIKEKSKYQTVPRNFAMTKANWSKQKELAQ 441

Query: 465 SKNDESEVERIKARLQQLEAS----RRLQMKDTKAIRLVEMNRKNRVENFKNASELRPLK 524
            + D  E E+I+ ++ ++E       + + K   AI  +    ++++++   + +L+  +
Sbjct: 442 QRGDIREAEQIQTKIDEIERQADELEKERSKSISAIAFINHRNRSKIKDQVLSGQLKIEE 501

Query: 525 DLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGGNSDNAMPASETNRTGSGRTAEA 584
           + +      DPF+R+    R    G+    +G   A         +S TN +  G+   +
Sbjct: 502 NSQD-----DPFTRKKGGMR-VVSGSKSRLDGTLSAS--------SSTTNLSDGGKDKSS 561

Query: 585 GMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFELPISLAVLQKFGGP 613
            +A                  +  +   T+ +SLH+F+L I L  L+ F  P
Sbjct: 562 SLAKPTQP-----------PPSTQIKKKTDISSLHDFDLDIDLGKLKDFSTP 570

[Close]

BLAST of Cp4.1LG01g09470 vs. NCBI nr
Match: XP_023534918.1 (protein RTF1 homolog [Cucurbita pepo subsp. pepo] >XP_023534927.1 protein RTF1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1217 bits (3148), Expect = 0.0
Identity = 658/658 (100.00%), Postives = 658/658 (100.00%), Query Frame = 0


Query: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS 60
           MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS
Sbjct: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS 60

Query: 61  GSQVPLKKRLDPAERDDDAGSQEEGDNEDVGSDREGDSSNESDVGDDLYKDDDDRRKLAG 120
           GSQVPLKKRLDPAERDDDAGSQEEGDNEDVGSDREGDSSNESDVGDDLYKDDDDRRKLAG
Sbjct: 61  GSQVPLKKRLDPAERDDDAGSQEEGDNEDVGSDREGDSSNESDVGDDLYKDDDDRRKLAG 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRAKKDKGKTAPSRKETSPLPSSRIRSSARSADRA 180
           MSELQREMILSDRASKKNDKHLYESLRAKKDKGKTAPSRKETSPLPSSRIRSSARSADRA
Sbjct: 121 MSELQREMILSDRASKKNDKHLYESLRAKKDKGKTAPSRKETSPLPSSRIRSSARSADRA 180

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANNRRFSPTKRKPFTAPSLSSSSESES 240
           AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANNRRFSPTKRKPFTAPSLSSSSESES
Sbjct: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANNRRFSPTKRKPFTAPSLSSSSESES 240

Query: 241 RFQSEDEESTGDGGMIDSDDERSMSGLKGPTFEDIKEITIRRSKLAKWLMEPFFEELIVG 300
           RFQSEDEESTGDGGMIDSDDERSMSGLKGPTFEDIKEITIRRSKLAKWLMEPFFEELIVG
Sbjct: 241 RFQSEDEESTGDGGMIDSDDERSMSGLKGPTFEDIKEITIRRSKLAKWLMEPFFEELIVG 300

Query: 301 CFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMA 360
           CFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMA
Sbjct: 301 CFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMA 360

Query: 361 MISDSAPLEDEYKQWLKEVERTNGRMLSKQDVLEKKEAIQKANNFVYSAATVKQMLREKK 420
           MISDSAPLEDEYKQWLKEVERTNGRMLSKQDVLEKKEAIQKANNFVYSAATVKQMLREKK
Sbjct: 361 MISDSAPLEDEYKQWLKEVERTNGRMLSKQDVLEKKEAIQKANNFVYSAATVKQMLREKK 420

Query: 421 SASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQLEASRRLQMKDTKAIRLVE 480
           SASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQLEASRRLQMKDTKAIRLVE
Sbjct: 421 SASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQLEASRRLQMKDTKAIRLVE 480

Query: 481 MNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGGNS 540
           MNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGGNS
Sbjct: 481 MNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGGNS 540

Query: 541 DNAMPASETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFELP 600
           DNAMPASETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFELP
Sbjct: 541 DNAMPASETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFELP 600

Query: 601 ISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 658
           ISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 601 ISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 658

[Close]

BLAST of Cp4.1LG01g09470 vs. NCBI nr
Match: XP_023522521.1 (protein RTF1 homolog isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1216 bits (3147), Expect = 0.0
Identity = 657/658 (99.85%), Postives = 658/658 (100.00%), Query Frame = 0


Query: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS 60
           MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS
Sbjct: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS 60

Query: 61  GSQVPLKKRLDPAERDDDAGSQEEGDNEDVGSDREGDSSNESDVGDDLYKDDDDRRKLAG 120
           GSQVPLKKRLDPAERDDDAGSQEEGDNEDVGSDREGDSSNESDVGDDLYKDDDDRRKLAG
Sbjct: 61  GSQVPLKKRLDPAERDDDAGSQEEGDNEDVGSDREGDSSNESDVGDDLYKDDDDRRKLAG 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRAKKDKGKTAPSRKETSPLPSSRIRSSARSADRA 180
           MSELQREMILSDRASKKNDKHLYESLRAKKDKGKTAPSRKETSPLPSSRIRSSARSADRA
Sbjct: 121 MSELQREMILSDRASKKNDKHLYESLRAKKDKGKTAPSRKETSPLPSSRIRSSARSADRA 180

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANNRRFSPTKRKPFTAPSLSSSSESES 240
           AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANNRRFSPTKRKPFTAPSLSSSSESES
Sbjct: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANNRRFSPTKRKPFTAPSLSSSSESES 240

Query: 241 RFQSEDEESTGDGGMIDSDDERSMSGLKGPTFEDIKEITIRRSKLAKWLMEPFFEELIVG 300
           RFQSEDEESTGDGGMIDSDDERSMSGLKGPTFEDIKEITIRRSKLAKWLMEPFFEELIVG
Sbjct: 241 RFQSEDEESTGDGGMIDSDDERSMSGLKGPTFEDIKEITIRRSKLAKWLMEPFFEELIVG 300

Query: 301 CFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMA 360
           CFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMA
Sbjct: 301 CFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMA 360

Query: 361 MISDSAPLEDEYKQWLKEVERTNGRMLSKQDVLEKKEAIQKANNFVYSAATVKQMLREKK 420
           M+SDSAPLEDEYKQWLKEVERTNGRMLSKQDVLEKKEAIQKANNFVYSAATVKQMLREKK
Sbjct: 361 MVSDSAPLEDEYKQWLKEVERTNGRMLSKQDVLEKKEAIQKANNFVYSAATVKQMLREKK 420

Query: 421 SASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQLEASRRLQMKDTKAIRLVE 480
           SASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQLEASRRLQMKDTKAIRLVE
Sbjct: 421 SASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQLEASRRLQMKDTKAIRLVE 480

Query: 481 MNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGGNS 540
           MNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGGNS
Sbjct: 481 MNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGGNS 540

Query: 541 DNAMPASETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFELP 600
           DNAMPASETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFELP
Sbjct: 541 DNAMPASETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFELP 600

Query: 601 ISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 658
           ISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 601 ISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 658

[Close]

BLAST of Cp4.1LG01g09470 vs. NCBI nr
Match: XP_023522520.1 (protein RTF1 homolog isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1216 bits (3147), Expect = 0.0
Identity = 657/658 (99.85%), Postives = 658/658 (100.00%), Query Frame = 0


Query: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS 60
           MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS
Sbjct: 21  MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS 80

Query: 61  GSQVPLKKRLDPAERDDDAGSQEEGDNEDVGSDREGDSSNESDVGDDLYKDDDDRRKLAG 120
           GSQVPLKKRLDPAERDDDAGSQEEGDNEDVGSDREGDSSNESDVGDDLYKDDDDRRKLAG
Sbjct: 81  GSQVPLKKRLDPAERDDDAGSQEEGDNEDVGSDREGDSSNESDVGDDLYKDDDDRRKLAG 140

Query: 121 MSELQREMILSDRASKKNDKHLYESLRAKKDKGKTAPSRKETSPLPSSRIRSSARSADRA 180
           MSELQREMILSDRASKKNDKHLYESLRAKKDKGKTAPSRKETSPLPSSRIRSSARSADRA
Sbjct: 141 MSELQREMILSDRASKKNDKHLYESLRAKKDKGKTAPSRKETSPLPSSRIRSSARSADRA 200

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANNRRFSPTKRKPFTAPSLSSSSESES 240
           AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANNRRFSPTKRKPFTAPSLSSSSESES
Sbjct: 201 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANNRRFSPTKRKPFTAPSLSSSSESES 260

Query: 241 RFQSEDEESTGDGGMIDSDDERSMSGLKGPTFEDIKEITIRRSKLAKWLMEPFFEELIVG 300
           RFQSEDEESTGDGGMIDSDDERSMSGLKGPTFEDIKEITIRRSKLAKWLMEPFFEELIVG
Sbjct: 261 RFQSEDEESTGDGGMIDSDDERSMSGLKGPTFEDIKEITIRRSKLAKWLMEPFFEELIVG 320

Query: 301 CFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMA 360
           CFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMA
Sbjct: 321 CFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMA 380

Query: 361 MISDSAPLEDEYKQWLKEVERTNGRMLSKQDVLEKKEAIQKANNFVYSAATVKQMLREKK 420
           M+SDSAPLEDEYKQWLKEVERTNGRMLSKQDVLEKKEAIQKANNFVYSAATVKQMLREKK
Sbjct: 381 MVSDSAPLEDEYKQWLKEVERTNGRMLSKQDVLEKKEAIQKANNFVYSAATVKQMLREKK 440

Query: 421 SASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQLEASRRLQMKDTKAIRLVE 480
           SASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQLEASRRLQMKDTKAIRLVE
Sbjct: 441 SASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQLEASRRLQMKDTKAIRLVE 500

Query: 481 MNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGGNS 540
           MNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGGNS
Sbjct: 501 MNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGGNS 560

Query: 541 DNAMPASETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFELP 600
           DNAMPASETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFELP
Sbjct: 561 DNAMPASETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFELP 620

Query: 601 ISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 658
           ISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 621 ISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 678

[Close]

BLAST of Cp4.1LG01g09470 vs. NCBI nr
Match: KAG6600617.1 (Protein RTF1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1214 bits (3141), Expect = 0.0
Identity = 655/658 (99.54%), Postives = 658/658 (100.00%), Query Frame = 0


Query: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS 60
           MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS
Sbjct: 57  MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS 116

Query: 61  GSQVPLKKRLDPAERDDDAGSQEEGDNEDVGSDREGDSSNESDVGDDLYKDDDDRRKLAG 120
           GSQVPLKKRLDPAERDDDAGSQEEGDNEDVGSDREGDSSNESDVGDDLYKDDDDRRKLAG
Sbjct: 117 GSQVPLKKRLDPAERDDDAGSQEEGDNEDVGSDREGDSSNESDVGDDLYKDDDDRRKLAG 176

Query: 121 MSELQREMILSDRASKKNDKHLYESLRAKKDKGKTAPSRKETSPLPSSRIRSSARSADRA 180
           MSELQREMILSDRASKKNDKHLYESLRAKKDKGKTAPSRKETSPLPSSRIRSSARSADRA
Sbjct: 177 MSELQREMILSDRASKKNDKHLYESLRAKKDKGKTAPSRKETSPLPSSRIRSSARSADRA 236

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANNRRFSPTKRKPFTAPSLSSSSESES 240
           AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANNRRFSPTKRKPFTAPSLSSSSESES
Sbjct: 237 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANNRRFSPTKRKPFTAPSLSSSSESES 296

Query: 241 RFQSEDEESTGDGGMIDSDDERSMSGLKGPTFEDIKEITIRRSKLAKWLMEPFFEELIVG 300
           RFQSEDEESTGDGGM+DSDDERSMSGLKGPTFEDIKEITIRRSKLAKWLMEPFFEELIVG
Sbjct: 297 RFQSEDEESTGDGGMVDSDDERSMSGLKGPTFEDIKEITIRRSKLAKWLMEPFFEELIVG 356

Query: 301 CFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMA 360
           CFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMA
Sbjct: 357 CFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMA 416

Query: 361 MISDSAPLEDEYKQWLKEVERTNGRMLSKQDVLEKKEAIQKANNFVYSAATVKQMLREKK 420
           M+SDSAPLEDEYKQWLKEVERTNGRMLSKQDVLEKKEAIQKANNFVYSAATVKQMLREKK
Sbjct: 417 MVSDSAPLEDEYKQWLKEVERTNGRMLSKQDVLEKKEAIQKANNFVYSAATVKQMLREKK 476

Query: 421 SASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQLEASRRLQMKDTKAIRLVE 480
           SASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQLEASRRLQMKDTKAIRLVE
Sbjct: 477 SASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQLEASRRLQMKDTKAIRLVE 536

Query: 481 MNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGGNS 540
           MNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGGNS
Sbjct: 537 MNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGGNS 596

Query: 541 DNAMPASETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFELP 600
           DNAMPASETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDT+APVDGGTESNSLHNFELP
Sbjct: 597 DNAMPASETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDTSAPVDGGTESNSLHNFELP 656

Query: 601 ISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 658
           ISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 657 ISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 714

[Close]

BLAST of Cp4.1LG01g09470 vs. NCBI nr
Match: KAG7031250.1 (Protein RTF1-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1214 bits (3141), Expect = 0.0
Identity = 655/658 (99.54%), Postives = 658/658 (100.00%), Query Frame = 0


Query: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS 60
           MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS
Sbjct: 27  MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS 86

Query: 61  GSQVPLKKRLDPAERDDDAGSQEEGDNEDVGSDREGDSSNESDVGDDLYKDDDDRRKLAG 120
           GSQVPLKKRLDPAERDDDAGSQEEGDNEDVGSDREGDSSNESDVGDDLYKDDDDRRKLAG
Sbjct: 87  GSQVPLKKRLDPAERDDDAGSQEEGDNEDVGSDREGDSSNESDVGDDLYKDDDDRRKLAG 146

Query: 121 MSELQREMILSDRASKKNDKHLYESLRAKKDKGKTAPSRKETSPLPSSRIRSSARSADRA 180
           MSELQREMILSDRASKKNDKHLYESLRAKKDKGKTAPSRKETSPLPSSRIRSSARSADRA
Sbjct: 147 MSELQREMILSDRASKKNDKHLYESLRAKKDKGKTAPSRKETSPLPSSRIRSSARSADRA 206

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANNRRFSPTKRKPFTAPSLSSSSESES 240
           AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANNRRFSPTKRKPFTAPSLSSSSESES
Sbjct: 207 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANNRRFSPTKRKPFTAPSLSSSSESES 266

Query: 241 RFQSEDEESTGDGGMIDSDDERSMSGLKGPTFEDIKEITIRRSKLAKWLMEPFFEELIVG 300
           RFQSEDEESTGDGGM+DSDDERSMSGLKGPTFEDIKEITIRRSKLAKWLMEPFFEELIVG
Sbjct: 267 RFQSEDEESTGDGGMVDSDDERSMSGLKGPTFEDIKEITIRRSKLAKWLMEPFFEELIVG 326

Query: 301 CFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMA 360
           CFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMA
Sbjct: 327 CFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMA 386

Query: 361 MISDSAPLEDEYKQWLKEVERTNGRMLSKQDVLEKKEAIQKANNFVYSAATVKQMLREKK 420
           M+SDSAPLEDEYKQWLKEVERTNGRMLSKQDVLEKKEAIQKANNFVYSAATVKQMLREKK
Sbjct: 387 MVSDSAPLEDEYKQWLKEVERTNGRMLSKQDVLEKKEAIQKANNFVYSAATVKQMLREKK 446

Query: 421 SASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQLEASRRLQMKDTKAIRLVE 480
           SASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQLEASRRLQMKDTKAIRLVE
Sbjct: 447 SASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQLEASRRLQMKDTKAIRLVE 506

Query: 481 MNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGGNS 540
           MNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGGNS
Sbjct: 507 MNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGGNS 566

Query: 541 DNAMPASETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFELP 600
           DNAMPASETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDT+APVDGGTESNSLHNFELP
Sbjct: 567 DNAMPASETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDTSAPVDGGTESNSLHNFELP 626

Query: 601 ISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 658
           ISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 627 ISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 684

[Close]

BLAST of Cp4.1LG01g09470 vs. ExPASy TrEMBL
Match: A0A6J1FPT3 (protein RTF1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111447124 PE=4 SV=1)

HSP 1 Score: 1210 bits (3131), Expect = 0.0
Identity = 653/658 (99.24%), Postives = 656/658 (99.70%), Query Frame = 0


Query: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS 60
           MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS
Sbjct: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS 60

Query: 61  GSQVPLKKRLDPAERDDDAGSQEEGDNEDVGSDREGDSSNESDVGDDLYKDDDDRRKLAG 120
           GSQVPLKKRLDPAERDDDAGSQEEGDNEDVGSDREGDSSNESDVGDDLYKDDDDRRKLAG
Sbjct: 61  GSQVPLKKRLDPAERDDDAGSQEEGDNEDVGSDREGDSSNESDVGDDLYKDDDDRRKLAG 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRAKKDKGKTAPSRKETSPLPSSRIRSSARSADRA 180
           MSELQREMILSDRASKKNDKHLYESLRAKKDKGKTAPSRKE SPLPSSRIRSSARSADRA
Sbjct: 121 MSELQREMILSDRASKKNDKHLYESLRAKKDKGKTAPSRKEISPLPSSRIRSSARSADRA 180

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANNRRFSPTKRKPFTAPSLSSSSESES 240
           AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANNRRFSPTKRKPFTAPSLSSSSESES
Sbjct: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANNRRFSPTKRKPFTAPSLSSSSESES 240

Query: 241 RFQSEDEESTGDGGMIDSDDERSMSGLKGPTFEDIKEITIRRSKLAKWLMEPFFEELIVG 300
           RFQSEDEESTGDGGM+DSDDERSMSGLKGPTFEDIKEITIRRSKLAKWLMEPFFEELIVG
Sbjct: 241 RFQSEDEESTGDGGMVDSDDERSMSGLKGPTFEDIKEITIRRSKLAKWLMEPFFEELIVG 300

Query: 301 CFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMA 360
           CFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMA
Sbjct: 301 CFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMA 360

Query: 361 MISDSAPLEDEYKQWLKEVERTNGRMLSKQDVLEKKEAIQKANNFVYSAATVKQMLREKK 420
           M+SDSAPLEDEYKQWLKEVERTNGRMLSKQDVLEKKEAIQKANNFVYSAATVKQMLREKK
Sbjct: 361 MVSDSAPLEDEYKQWLKEVERTNGRMLSKQDVLEKKEAIQKANNFVYSAATVKQMLREKK 420

Query: 421 SASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQLEASRRLQMKDTKAIRLVE 480
           SASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQLEASRRLQMKDTKAIRLVE
Sbjct: 421 SASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQLEASRRLQMKDTKAIRLVE 480

Query: 481 MNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGGNS 540
           MNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGGNS
Sbjct: 481 MNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGGNS 540

Query: 541 DNAMPASETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFELP 600
           DNAMP SETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDT+APVDGGTESNSLHNFELP
Sbjct: 541 DNAMPVSETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDTSAPVDGGTESNSLHNFELP 600

Query: 601 ISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 658
           ISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 601 ISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 658

[Close]

BLAST of Cp4.1LG01g09470 vs. ExPASy TrEMBL
Match: A0A6J1ITJ0 (protein RTF1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111479205 PE=4 SV=1)

HSP 1 Score: 1210 bits (3130), Expect = 0.0
Identity = 652/658 (99.09%), Postives = 656/658 (99.70%), Query Frame = 0


Query: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS 60
           MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS
Sbjct: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS 60

Query: 61  GSQVPLKKRLDPAERDDDAGSQEEGDNEDVGSDREGDSSNESDVGDDLYKDDDDRRKLAG 120
           GSQVPLKKRLDPAERDDDAGSQEEGDNEDVGSDREGDSSNESDVGDDLYKDDDDRRKLAG
Sbjct: 61  GSQVPLKKRLDPAERDDDAGSQEEGDNEDVGSDREGDSSNESDVGDDLYKDDDDRRKLAG 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRAKKDKGKTAPSRKETSPLPSSRIRSSARSADRA 180
           MSELQREMILSDRASKKNDKHLYESLRAKKDKGKTAPSRKET PLPSSRIRSSARSADRA
Sbjct: 121 MSELQREMILSDRASKKNDKHLYESLRAKKDKGKTAPSRKETLPLPSSRIRSSARSADRA 180

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANNRRFSPTKRKPFTAPSLSSSSESES 240
           AAKDDALNELRAKRLKQQDPEAHRKLRDASRGN NNRRFSPTKRKPFTAPSLSSSSESES
Sbjct: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNTNNRRFSPTKRKPFTAPSLSSSSESES 240

Query: 241 RFQSEDEESTGDGGMIDSDDERSMSGLKGPTFEDIKEITIRRSKLAKWLMEPFFEELIVG 300
           RFQSEDEESTGDGGM+DSDDERSMSGLKGPTFEDIKEITIRRSKLAKWLMEPFFEELIVG
Sbjct: 241 RFQSEDEESTGDGGMVDSDDERSMSGLKGPTFEDIKEITIRRSKLAKWLMEPFFEELIVG 300

Query: 301 CFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMA 360
           CFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMA
Sbjct: 301 CFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQMA 360

Query: 361 MISDSAPLEDEYKQWLKEVERTNGRMLSKQDVLEKKEAIQKANNFVYSAATVKQMLREKK 420
           M+SDSAPLEDEYKQWLKEVERTNGRMLS+QDVLEKKEAIQKANNFVYSAATVKQMLR+KK
Sbjct: 361 MVSDSAPLEDEYKQWLKEVERTNGRMLSRQDVLEKKEAIQKANNFVYSAATVKQMLRDKK 420

Query: 421 SASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQLEASRRLQMKDTKAIRLVE 480
           SASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQLEASRRLQMKDTKAIRLVE
Sbjct: 421 SASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQLEASRRLQMKDTKAIRLVE 480

Query: 481 MNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGGNS 540
           MNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGGNS
Sbjct: 481 MNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGGNS 540

Query: 541 DNAMPASETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFELP 600
           DNAMPASETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFELP
Sbjct: 541 DNAMPASETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFELP 600

Query: 601 ISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 658
           ISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 601 ISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 658

[Close]

BLAST of Cp4.1LG01g09470 vs. ExPASy TrEMBL
Match: A0A0A0KXW1 (Plus3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G038650 PE=4 SV=1)

HSP 1 Score: 1130 bits (2924), Expect = 0.0
Identity = 610/660 (92.42%), Postives = 634/660 (96.06%), Query Frame = 0


Query: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS 60
           MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS
Sbjct: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS 60

Query: 61  GSQVPLKKRLDPAERDDDAGSQEEGDNEDVGSDREGDSSNESDVGDDLYKDDDDRRKLAG 120
           GSQVPLKKRLDP ERDDD GSQEEG++EDVGS+REGDSS+ESDVGDDLYKDDDDRRKLAG
Sbjct: 61  GSQVPLKKRLDPTERDDDGGSQEEGEDEDVGSEREGDSSDESDVGDDLYKDDDDRRKLAG 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRAKKDKGKTAPSRKETSPLPSSRIRSSARSADRA 180
           MSELQREMILSDRASKKNDKHLYESLRAK DKGK+APSRKET PLPSSRIRSSARSADRA
Sbjct: 121 MSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRA 180

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANNRRFSPTKRKPFTAPSLSSSS--ES 240
           AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNAN+RRFSPTKRKPFTAPSLSSSS  ES
Sbjct: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSSSQSES 240

Query: 241 ESRFQSEDEESTGDGGMIDSDDERSMSGLKGPTFEDIKEITIRRSKLAKWLMEPFFEELI 300
           ESRFQS+DE STGDGGMIDSDDERS+ G  GPTFEDIKE+TIRRSKLAKWLMEPFFEELI
Sbjct: 241 ESRFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEELI 300

Query: 301 VGCFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQ 360
           VGCFVRVGIGRSRSG IYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNE+SAARWQ
Sbjct: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAARWQ 360

Query: 361 MAMISDSAPLEDEYKQWLKEVERTNGRMLSKQDVLEKKEAIQKANNFVYSAATVKQMLRE 420
           MAM+SDSAPLEDEYKQW+KEVERT GRMLSKQD+LEKKEAIQK NNFVYSAATVKQML++
Sbjct: 361 MAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQD 420

Query: 421 KKSASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQLEASRRLQMKDTKAIRL 480
           KKSAS+RPLNIAAEKDRLRREMDVA+SKNDE+EVERIK RLQQLEASRRLQMKD KAIRL
Sbjct: 421 KKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQMKDAKAIRL 480

Query: 481 VEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGG 540
            EMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYV NAGEANGAAEA G
Sbjct: 481 AEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAG 540

Query: 541 NSDNAMPASETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE 600
           NSDN  PA E  RT +G T++AGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE
Sbjct: 541 NSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE 600

Query: 601 LPISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 658
           LPISLA+LQKFGG +GAQAGFLARKQ+IEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 601 LPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 660

[Close]

BLAST of Cp4.1LG01g09470 vs. ExPASy TrEMBL
Match: A0A1S3BXS8 (protein RTF1 homolog OS=Cucumis melo OX=3656 GN=LOC103494388 PE=4 SV=1)

HSP 1 Score: 1123 bits (2906), Expect = 0.0
Identity = 607/660 (91.97%), Postives = 630/660 (95.45%), Query Frame = 0


Query: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS 60
           MADLENLLLEAAGRTNA G NRHSHPPSRRQREGSYSD GSDSRDDDSDD+RGYASRKPS
Sbjct: 1   MADLENLLLEAAGRTNAGGGNRHSHPPSRRQREGSYSDGGSDSRDDDSDDERGYASRKPS 60

Query: 61  GSQVPLKKRLDPAERDDDAGSQEEGDNEDVGSDREGDSSNESDVGDDLYKDDDDRRKLAG 120
           GSQVPLKKRLDP ERDDD GS EEG++EDVGS+ EGDSS+ESDVGDDLYKDDDDRRKLAG
Sbjct: 61  GSQVPLKKRLDPTERDDDGGSPEEGEDEDVGSEHEGDSSDESDVGDDLYKDDDDRRKLAG 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRAKKDKGKTAPSRKETSPLPSSRIRSSARSADRA 180
           MSELQREMILSDRASKKNDKHLYESLRAK DKGKTAPSRKET PLPSSRIRSSARSADRA
Sbjct: 121 MSELQREMILSDRASKKNDKHLYESLRAKMDKGKTAPSRKETPPLPSSRIRSSARSADRA 180

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANNRRFSPTKRKPFTAPSLSSSS--ES 240
           AAKDDALNELRAKRLKQQDPEAHRKLRDASRGN+NNRRFSPTKRKPFTAPSLSSSS  ES
Sbjct: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNSNNRRFSPTKRKPFTAPSLSSSSQSES 240

Query: 241 ESRFQSEDEESTGDGGMIDSDDERSMSGLKGPTFEDIKEITIRRSKLAKWLMEPFFEELI 300
           ESRFQS+DE STGDGGMIDSDDERSM G  GPTFEDIKEITIRRSKLAKWLMEPFFEELI
Sbjct: 241 ESRFQSDDEGSTGDGGMIDSDDERSMPGSDGPTFEDIKEITIRRSKLAKWLMEPFFEELI 300

Query: 301 VGCFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQ 360
           VGCFVRVGIGRSRSG IYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNE+SAARWQ
Sbjct: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNENSAARWQ 360

Query: 361 MAMISDSAPLEDEYKQWLKEVERTNGRMLSKQDVLEKKEAIQKANNFVYSAATVKQMLRE 420
           MAM+SDSAPLEDEYKQW+KEVERT GRMLSKQDVLEKK+AIQK NNFVYSAATVKQML++
Sbjct: 361 MAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDVLEKKDAIQKVNNFVYSAATVKQMLQD 420

Query: 421 KKSASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQLEASRRLQMKDTKAIRL 480
           KKSAS+RPLNIAAEKDRLRREMDVA+SKNDE+EVERIK RLQQLEASRRLQMKD KAIRL
Sbjct: 421 KKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKGRLQQLEASRRLQMKDAKAIRL 480

Query: 481 VEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGG 540
            EMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYV NAGEANGAAEA G
Sbjct: 481 AEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAG 540

Query: 541 NSDNAMPASETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE 600
           NSD   PA E+ RTG+G T++AGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE
Sbjct: 541 NSDTVTPALESTRTGAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE 600

Query: 601 LPISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 658
           LPISLA+LQKFGG +GAQAGFLARKQ+IEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 601 LPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 660

[Close]

BLAST of Cp4.1LG01g09470 vs. ExPASy TrEMBL
Match: A0A5A7TNN4 (Protein RTF1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005550 PE=4 SV=1)

HSP 1 Score: 1123 bits (2906), Expect = 0.0
Identity = 607/660 (91.97%), Postives = 630/660 (95.45%), Query Frame = 0


Query: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS 60
           MADLENLLLEAAGRTNA G NRHSHPPSRRQREGSYSD GSDSRDDDSDD+RGYASRKPS
Sbjct: 1   MADLENLLLEAAGRTNAGGGNRHSHPPSRRQREGSYSDGGSDSRDDDSDDERGYASRKPS 60

Query: 61  GSQVPLKKRLDPAERDDDAGSQEEGDNEDVGSDREGDSSNESDVGDDLYKDDDDRRKLAG 120
           GSQVPLKKRLDP ERDDD GS EEG++EDVGS+ EGDSS+ESDVGDDLYKDDDDRRKLAG
Sbjct: 61  GSQVPLKKRLDPTERDDDGGSPEEGEDEDVGSEHEGDSSDESDVGDDLYKDDDDRRKLAG 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRAKKDKGKTAPSRKETSPLPSSRIRSSARSADRA 180
           MSELQREMILSDRASKKNDKHLYESLRAK DKGKTAPSRKET PLPSSRIRSSARSADRA
Sbjct: 121 MSELQREMILSDRASKKNDKHLYESLRAKMDKGKTAPSRKETPPLPSSRIRSSARSADRA 180

Query: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANNRRFSPTKRKPFTAPSLSSSS--ES 240
           AAKDDALNELRAKRLKQQDPEAHRKLRDASRGN+NNRRFSPTKRKPFTAPSLSSSS  ES
Sbjct: 181 AAKDDALNELRAKRLKQQDPEAHRKLRDASRGNSNNRRFSPTKRKPFTAPSLSSSSQSES 240

Query: 241 ESRFQSEDEESTGDGGMIDSDDERSMSGLKGPTFEDIKEITIRRSKLAKWLMEPFFEELI 300
           ESRFQS+DE STGDGGMIDSDDERSM G  GPTFEDIKEITIRRSKLAKWLMEPFFEELI
Sbjct: 241 ESRFQSDDEGSTGDGGMIDSDDERSMPGSDGPTFEDIKEITIRRSKLAKWLMEPFFEELI 300

Query: 301 VGCFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQ 360
           VGCFVRVGIGRSRSG IYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNE+SAARWQ
Sbjct: 301 VGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNENSAARWQ 360

Query: 361 MAMISDSAPLEDEYKQWLKEVERTNGRMLSKQDVLEKKEAIQKANNFVYSAATVKQMLRE 420
           MAM+SDSAPLEDEYKQW+KEVERT GRMLSKQDVLEKK+AIQK NNFVYSAATVKQML++
Sbjct: 361 MAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDVLEKKDAIQKVNNFVYSAATVKQMLQD 420

Query: 421 KKSASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQLEASRRLQMKDTKAIRL 480
           KKSAS+RPLNIAAEKDRLRREMDVA+SKNDE+EVERIK RLQQLEASRRLQMKD KAIRL
Sbjct: 421 KKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKGRLQQLEASRRLQMKDAKAIRL 480

Query: 481 VEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVGNAGEANGAAEAGG 540
            EMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYV NAGEANGAAEA G
Sbjct: 481 AEMNRKNRVENFKNASELRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAAEAAG 540

Query: 541 NSDNAMPASETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE 600
           NSD   PA E+ RTG+G T++AGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE
Sbjct: 541 NSDTVTPALESTRTGAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSLHNFE 600

Query: 601 LPISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 658
           LPISLA+LQKFGG +GAQAGFLARKQ+IEATVGRQVPENDGRRHALTLTVSDYKRRRGLL
Sbjct: 601 LPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRRRGLL 660

[Close]

BLAST of Cp4.1LG01g09470 vs. TAIR 10
Match: AT1G61040.1 (plus-3 domain-containing protein )

HSP 1 Score: 805.1 bits (2078), Expect = 4.3e-233
Identity = 460/664 (69.28%), Postives = 540/664 (81.33%), Query Frame = 0


Query: 1   MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS 60
           M DLENLLLEAAGRTN+AGR+R  HPPS R+REGSYSD  SDSR DDSD+DRGYASRKPS
Sbjct: 1   MGDLENLLLEAAGRTNSAGRSR--HPPSSRRREGSYSDGSSDSR-DDSDEDRGYASRKPS 60

Query: 61  GSQVPLKKRLDPAERDDDAGSQEEGDNEDVGSDREGDSSNESDVGDDLYKDDDDRRKLAG 120
           GSQVPLKKRL+ AER+D A ++ EG   D  SDREGDSS ESD GDDLYK+++DR+KLAG
Sbjct: 61  GSQVPLKKRLE-AEREDRA-ARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAG 120

Query: 121 MSELQREMILSDRASKKNDKHLYESLRAKKDKGKTAPSRKETSPLPSSR-IRSSARSADR 180
           M+E QREMILS+RA KK DK+  E LR+K++  KT  S+KET PLP+SR +RSSARSADR
Sbjct: 121 MTEFQREMILSERADKKGDKNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSADR 180

Query: 181 AAAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANNRRFSPTKRKPFTAPSLSSSSESE 240
           AAAKDDALNELRAKR+KQQDP A RKLRDAS+G + +R FS TKRKP  + +LSSSS+S+
Sbjct: 181 AAAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSTKRKPLASSNLSSSSQSD 240

Query: 241 SRFQSEDEESTGDGGMIDSDDERSMSGLKGPTFEDIKEITIRRSKLAKWLMEPFFEELIV 300
           S  +S+ ++   +GGM+DSDD+RS      PTFED+KE+TIRRSKLAKWLMEPFFEELIV
Sbjct: 241 SDSRSQSDDEGSNGGMLDSDDDRS----DVPTFEDVKEVTIRRSKLAKWLMEPFFEELIV 300

Query: 301 GCFVRVGIGRSRSGSIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNESSAARWQM 360
           GCFVRVGIGRS+SG IYRLC V+NVDAT+PD+ YKLENK THKYLNV+WGNE+SAARWQM
Sbjct: 301 GCFVRVGIGRSKSGPIYRLCWVKNVDATDPDKTYKLENKTTHKYLNVVWGNETSAARWQM 360

Query: 361 AMISDSAPLEDEYKQWLKEVERTNGRMLSKQDVLEKKEAIQKANNFVYSAATVKQMLREK 420
           AMISD  PLE+EY+QW++EVERTNGRM +KQD+ EKKEAIQ+ N+FVYSA TVKQML+EK
Sbjct: 361 AMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNSFVYSAETVKQMLQEK 420

Query: 421 KSASSRPLNIAAEKDRLRREMDVALSKNDESEVERIKARLQQLEASRRLQMKDTKAIRLV 480
           KSAS RP+N+AAEKDRLR+E+++A SKNDE+ VERIK++++QL+ASR  +  D KA++L 
Sbjct: 421 KSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKSKIKQLDASRNKKGVDKKALKLA 480

Query: 481 EMNRKNRVENFKNASELRPL-KDLKAGEAGYDPFSRRWTRSRNYY----VGNAGEANGAA 540
           EMN+KNR ENFKNASE++ +   LKAGEAGYDPFSRRWTRS NYY     G  GE N AA
Sbjct: 481 EMNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKNKGKDGEENEAA 540

Query: 541 EAGGNSDNAMPASETNRTGSGRTAEAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSL 600
            A         A ETN    G  A AG+ AT AALEAAA AGKL+DT AP+  G E N L
Sbjct: 541 VAA--------AVETN----GADAGAGVEATEAALEAAAEAGKLIDTRAPIGQGAEHNQL 600

Query: 601 HNFELPISLAVLQKFGGPMGAQAGFLARKQQIEATVGRQVPENDGRRHALTLTVSDYKRR 659
           HNFEL +SL  LQK+GGP G Q  F+ARKQ  EATVG +V ENDG+RH LTLTVSDYKRR
Sbjct: 601 HNFELSLSLTALQKYGGPQGVQKAFMARKQLTEATVGCRVAENDGKRHGLTLTVSDYKRR 643

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g09470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C950	6.1e-232	69.28	Protein RTF1 homolog OS=Arabidopsis thaliana OX=3702 GN=VIP5 PE=1 SV=1	[more]
A2AQ19	1.3e-21	25.83	RNA polymerase-associated protein RTF1 homolog OS=Mus musculus OX=10090 GN=Rtf1 ...	[more]
Q92541	3.0e-21	25.53	RNA polymerase-associated protein RTF1 homolog OS=Homo sapiens OX=9606 GN=RTF1 P...	[more]
Q5RAD5	2.6e-17	25.38	RNA polymerase-associated protein RTF1 homolog (Fragment) OS=Pongo abelii OX=960...	[more]
G5EBY0	2.1e-14	24.49	RNA polymerase-associated protein RTF1 homolog OS=Caenorhabditis elegans OX=6239...	[more]

BLAST of Cp4.1LG01g09470 vs. NCBI nr


Match Name	Identity	Description
XP_023534918.1	100.00	protein RTF1 homolog [Cucurbita pepo subsp. pepo] >XP_023534927.1 protein RTF1 h...	[more]
XP_023522521.1	99.85	protein RTF1 homolog isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023522520.1	99.85	protein RTF1 homolog isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAG6600617.1	99.54	Protein RTF1-like protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7031250.1	99.54	Protein RTF1-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Cp4.1LG01g09470 vs. ExPASy TrEMBL


Match Name	Identity	Description
A0A6J1FPT3	99.24	protein RTF1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111447124 PE=4 SV=1	[more]
A0A6J1ITJ0	99.09	protein RTF1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111479205 PE=4 SV=1	[more]
A0A0A0KXW1	92.42	Plus3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G038650 PE=4 ...	[more]
A0A1S3BXS8	91.97	protein RTF1 homolog OS=Cucumis melo OX=3656 GN=LOC103494388 PE=4 SV=1	[more]
A0A5A7TNN4	91.97	Protein RTF1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of Cp4.1LG01g09470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61040.1	4.3e-233	69.28	plus-3 domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 433..472
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 542..556
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..239
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..269
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 533..558
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..212
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..56
None	No IPR available	PANTHER	PTHR13115	UNCHARACTERIZED	coord: 1..658
None	No IPR available	PANTHER	PTHR13115:SF15	PLUS-3 DOMAIN PROTEIN	coord: 1..658
IPR004343	Plus-3 domain	SMART	SM00719	rtf1	coord: 269..381 e-value: 3.2E-44 score: 162.9
IPR004343	Plus-3 domain	PFAM	PF03126	Plus-3	coord: 274..379 e-value: 2.7E-30 score: 105.1
IPR004343	Plus-3 domain	PROSITE	PS51360	PLUS3	coord: 269..404 score: 36.385811
IPR036128	Plus3-like superfamily	GENE3D	3.90.70.200		coord: 270..402 e-value: 1.6E-35 score: 123.8
IPR036128	Plus3-like superfamily	SUPERFAMILY	159042	Plus3-like	coord: 271..402

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g09470.1	Cp4.1LG01g09470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016593	Cdc73/Paf1 complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:1990269	RNA polymerase II C-terminal domain phosphoserine binding