Cp4.1LG01g09430 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g09430
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial
Location	Cp4.1LG01: 4256556 .. 4257804 (+)
RNA-Seq Expression	Cp4.1LG01g09430
Synteny	Cp4.1LG01g09430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAACAGACACATCATATTCACAAAGCTACCACGTGTAATTCAACCAATAAACACACCGTCAATGCACAACCACAGCCCTCTTCAACCCCAACCTCTCCAGACAAATTCACAAAACAGAGAATATGTTAAGAACCTGGTTCCGCAATGCCTACAACAAGGCCCTCCCTAAGCCGCCGGCAAACCAAAAGTTTGGACTACTGGACGGCCATCCTGCGGCTCAGCAACATGCACAGGAAGCCATGGAAGCCCATACCAAATTTAAATCCAATCAAAAGGAGTTCAGAGTGTATCGGTGGAGTCCTGAGCATCCCAACCACAAGCCTTTCCTTCAGTCTTTCTTCATTGATCTCTCTAAATGTGGCTCAATGGTATTGCATCATTTAATCTTCATAATCACTAAGCTTGGTTGGTTGGTTGATTGATTTATTGGGTAGCTTTATTTTAGGTATTAGATGCCTTACAGAAGATAAAAGCAGAGGAAGACTCAAGCTTGAGCTACAGAAGGTCTTGTAGGGAAGGTATATGCGGATCATGTGCTATGAACATCGATGGAGCCAACACTGTGGCTTGCCTCAAACCTATTGATACTGACACTTCCAAACCCACCATTATAACGCCCCTTCCCCATATGTTTGTCATCAAAGATCTTGCTGTTGATCTCACTAATTTCTATCAGCAATACAAGTAATGTCATCCAATTTTTTGTTCTATATGGAACACAAATACAAGTGATCTAATACAAGCATTACCCTTTATGTATAGGTCGATCGAGCCATGGTTGAAGACCAAAAGGTTGCCGAAGGATGGGCGAGAGTTCAGGCAATCTCCAGCGGAGAGGAGGAAGCTGGATGGGTTGTATGAGTGTATTCTGTGCGCTTGTTGCAGTGCTTCATGCCCTCCATATTGGTGGAATCCAGAGGAGTTTCTTGGCCCTGCTGCCTTGCTACACGCCTGTCGATGGATCTCTGATAGTCGAGACGAGTTCGAGAAGGAACGACTGCAAGCAATAGCTGAAGACAAGACGAAGCTGTATAGATGTAGAACTGTACAGAATTGCACAGCCAACTGCCCCAAAAGCCTTGATCCTTCCGGTGCCATTCACCACATGAAGGCTATGCATTTGCTCTCAAAGGACAACAATTAGCTATGTTTTTCTCTGTTTTTCGTGTTATCTTTCAATCTTAATCTTAAAAGGAAATCAATAAATATCTGTGGTTTCAAATTGAAAAATGTAAGTAGAGTTCTATA

mRNA sequence

CAAACAGACACATCATATTCACAAAGCTACCACGTGTAATTCAACCAATAAACACACCGTCAATGCACAACCACAGCCCTCTTCAACCCCAACCTCTCCAGACAAATTCACAAAACAGAGAATATGTTAAGAACCTGGTTCCGCAATGCCTACAACAAGGCCCTCCCTAAGCCGCCGGCAAACCAAAAGTTTGGACTACTGGACGGCCATCCTGCGGCTCAGCAACATGCACAGGAAGCCATGGAAGCCCATACCAAATTTAAATCCAATCAAAAGGAGTTCAGAGTGTATCGGTGGAGTCCTGAGCATCCCAACCACAAGCCTTTCCTTCAGTCTTTCTTCATTGATCTCTCTAAATGTGGCTCAATGGTATTAGATGCCTTACAGAAGATAAAAGCAGAGGAAGACTCAAGCTTGAGCTACAGAAGGTCTTGTAGGGAAGGTATATGCGGATCATGTGCTATGAACATCGATGGAGCCAACACTGTGGCTTGCCTCAAACCTATTGATACTGACACTTCCAAACCCACCATTATAACGCCCCTTCCCCATATGTTTGTCATCAAAGATCTTGCTGTTGATCTCACTAATTTCTATCAGCAATACAAGTCGATCGAGCCATGGTTGAAGACCAAAAGGTTGCCGAAGGATGGGCGAGAGTTCAGGCAATCTCCAGCGGAGAGGAGGAAGCTGGATGGGTTGTATGAGTGTATTCTGTGCGCTTGTTGCAGTGCTTCATGCCCTCCATATTGGTGGAATCCAGAGGAGTTTCTTGGCCCTGCTGCCTTGCTACACGCCTGTCGATGGATCTCTGATAGTCGAGACGAGTTCGAGAAGGAACGACTGCAAGCAATAGCTGAAGACAAGACGAAGCTGTATAGATGTAGAACTGTACAGAATTGCACAGCCAACTGCCCCAAAAGCCTTGATCCTTCCGGTGCCATTCACCACATGAAGGCTATGCATTTGCTCTCAAAGGACAACAATTAGCTATGTTTTTCTCTGTTTTTCGTGTTATCTTTCAATCTTAATCTTAAAAGGAAATCAATAAATATCTGTGGTTTCAAATTGAAAAATGTAAGTAGAGTTCTATA

Coding sequence (CDS)

ATGTTAAGAACCTGGTTCCGCAATGCCTACAACAAGGCCCTCCCTAAGCCGCCGGCAAACCAAAAGTTTGGACTACTGGACGGCCATCCTGCGGCTCAGCAACATGCACAGGAAGCCATGGAAGCCCATACCAAATTTAAATCCAATCAAAAGGAGTTCAGAGTGTATCGGTGGAGTCCTGAGCATCCCAACCACAAGCCTTTCCTTCAGTCTTTCTTCATTGATCTCTCTAAATGTGGCTCAATGGTATTAGATGCCTTACAGAAGATAAAAGCAGAGGAAGACTCAAGCTTGAGCTACAGAAGGTCTTGTAGGGAAGGTATATGCGGATCATGTGCTATGAACATCGATGGAGCCAACACTGTGGCTTGCCTCAAACCTATTGATACTGACACTTCCAAACCCACCATTATAACGCCCCTTCCCCATATGTTTGTCATCAAAGATCTTGCTGTTGATCTCACTAATTTCTATCAGCAATACAAGTCGATCGAGCCATGGTTGAAGACCAAAAGGTTGCCGAAGGATGGGCGAGAGTTCAGGCAATCTCCAGCGGAGAGGAGGAAGCTGGATGGGTTGTATGAGTGTATTCTGTGCGCTTGTTGCAGTGCTTCATGCCCTCCATATTGGTGGAATCCAGAGGAGTTTCTTGGCCCTGCTGCCTTGCTACACGCCTGTCGATGGATCTCTGATAGTCGAGACGAGTTCGAGAAGGAACGACTGCAAGCAATAGCTGAAGACAAGACGAAGCTGTATAGATGTAGAACTGTACAGAATTGCACAGCCAACTGCCCCAAAAGCCTTGATCCTTCCGGTGCCATTCACCACATGAAGGCTATGCATTTGCTCTCAAAGGACAACAATTAG

Protein sequence

MLRTWFRNAYNKALPKPPANQKFGLLDGHPAAQQHAQEAMEAHTKFKSNQKEFRVYRWSPEHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGANTVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREFRQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN

Homology

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BLAST of Cp4.1LG01g09430 vs. ExPASy Swiss-Prot
Match: Q9FJP9 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH2-3 PE=1 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 1.0e-114
Identity = 193/269 (71.75%), Postives = 227/269 (84.39%), Query Frame = 0


Query: 23  FGLLDGHPAAQQHAQEAMEAH--TKFKSNQ-----KEFRVYRWSPEHPNHKPFLQSFFID 82
           F +L+GH AAQ  +++ +++   TK K  Q     KEF++YRW+P+ PN KPFLQSFF+D
Sbjct: 32  FPILNGHKAAQDLSKDTLKSQDITKEKEGQHKEVKKEFKIYRWNPDKPNSKPFLQSFFVD 91

Query: 83  LSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGANTVACLKPIDTDTSKP 142
           LS CG MVLD LQKIKAE+D+SLSYRRSCREGICGSC+MNIDG NTVACLKPI+ +TSKP
Sbjct: 92  LSSCGPMVLDVLQKIKAEDDASLSYRRSCREGICGSCSMNIDGTNTVACLKPINPNTSKP 151

Query: 143 TIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREFRQSPAERRKLDGLYE 202
           TIITPLPHM+VIKDL VDLTNFYQQYKS+EPWLKT++ PKDGRE RQSP +R+KLDGLYE
Sbjct: 152 TIITPLPHMYVIKDLVVDLTNFYQQYKSMEPWLKTRKPPKDGREHRQSPKDRKKLDGLYE 211

Query: 203 CILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKERLQAIAEDKTKLYRCR 262
           CILCACC+ SCP YWWNPEEF GPAALL A RWISDSRDE+ +ERLQAI E +TK+YRCR
Sbjct: 212 CILCACCTTSCPSYWWNPEEFPGPAALLQAYRWISDSRDEYREERLQAITESETKVYRCR 271

Query: 263 TVQNCTANCPKSLDPSGAIHHMKAMHLLS 285
            ++NCTA CPK L+P+ AI  MK+ HLLS
Sbjct: 272 AIKNCTATCPKGLNPASAILKMKSKHLLS 300

[Close]

BLAST of Cp4.1LG01g09430 vs. ExPASy Swiss-Prot
Match: Q6H4G3 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=SDH2-2 PE=1 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 2.4e-100
Identity = 176/289 (60.90%), Postives = 214/289 (74.05%), Query Frame = 0


Query: 19  ANQKFGLLDGHPAAQQHAQEAME---------------------AHTKFKSNQKEFRVYR 78
           A+  F  L GHPAA+ +A++A E                     A +   S  KEFRVYR
Sbjct: 22  ADGHFPSLRGHPAARANARDAAEKQAALAAKEEEIRDHRRGDAAAASPAPSTVKEFRVYR 81

Query: 79  WSPEHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNID 138
           WSP+ P+ +P LQS+ +DL+ CG MVLD LQKIKAE D++L++RRSCREGICGSC+M ID
Sbjct: 82  WSPDAPSRRPHLQSYHVDLATCGPMVLDVLQKIKAEHDATLAFRRSCREGICGSCSMCID 141

Query: 139 GANTVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPK-D 198
           G NTVACL+P+DTDTS  T +TPLPHM+V++DL VDLT+FYQQYKS+EPWLK K   K +
Sbjct: 142 GVNTVACLRPVDTDTSSATTVTPLPHMYVVRDLVVDLTSFYQQYKSVEPWLKRKTKTKTE 201

Query: 199 GREFRQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEF 258
             E  QSP ER++LDGLYECILCACCSA+CP YWWN E FLGPAALLHA RW+SDSRDE+
Sbjct: 202 TTEHAQSPEERKRLDGLYECILCACCSAACPSYWWNAEAFLGPAALLHAYRWVSDSRDEY 261

Query: 259 EKERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSK 286
             ER+QA+AE   KLYRCR +++CTA CPKSLDP+ AI  MK +H L K
Sbjct: 262 AAERVQALAEGWDKLYRCRMIKSCTATCPKSLDPAAAISAMKTLHQLGK 310

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BLAST of Cp4.1LG01g09430 vs. ExPASy Swiss-Prot
Match: Q9S827 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=SDH2-1 PE=1 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 1.2e-86
Identity = 152/240 (63.33%), Postives = 184/240 (76.67%), Query Frame = 0


Query: 44  TKFKSNQKEFRVYRWSPEHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRS 103
           +K  +N K F +YRW P+ P+ KP L+ + +DLS CG MVLD L KIK E+D SL++RRS
Sbjct: 42  SKAGANTKTFSIYRWDPDSPSTKPHLKDYKVDLSDCGPMVLDVLLKIKNEQDPSLTFRRS 101

Query: 104 CREGICGSCAMNIDGANTVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKS 163
           CREGICGSCAMNIDG N +ACL  I + +S  T I+PLPHMFVIKDL VD+TNFY QYKS
Sbjct: 102 CREGICGSCAMNIDGDNGLACLTKISSASSAST-ISPLPHMFVIKDLVVDMTNFYNQYKS 161

Query: 164 IEPWLKTKRL-PKDGREFRQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAAL 223
           +EPWLK K   P+ G+E  Q+ A+R KLDG+YECILCACCS SCP YWWNPEE+LGPAAL
Sbjct: 162 VEPWLKRKDAPPQPGKEIPQTKADRAKLDGMYECILCACCSTSCPSYWWNPEEYLGPAAL 221

Query: 224 LHACRWISDSRDEFEKERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHL 283
           LHA RWI DSRD+F KERL +I  D+ KLYRC T++NCT  CPK L+P+  I  +K + L
Sbjct: 222 LHANRWIQDSRDQFTKERLDSI-NDEFKLYRCHTIKNCTHACPKGLNPAKHIDTIKKLQL 279

[Close]

BLAST of Cp4.1LG01g09430 vs. ExPASy Swiss-Prot
Match: Q8LB02 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH2-2 PE=1 SV=2)

HSP 1 Score: 318.2 bits (814), Expect = 9.8e-86
Identity = 154/231 (66.67%), Postives = 178/231 (77.06%), Query Frame = 0


Query: 51  KEFRVYRWSPEHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICG 110
           K F++YRW+P++P  KP LQ + IDL  CG MVLDAL KIK E D SL++RRSCREGICG
Sbjct: 49  KTFQIYRWNPDNPG-KPELQDYKIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICG 108

Query: 111 SCAMNIDGANTVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKT 170
           SCAMNIDG N +ACL  I++  SK T ITPLPHMFVIKDL VD+TNFY QYKSIEPWLK 
Sbjct: 109 SCAMNIDGCNGLACLTKIESG-SKETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKR 168

Query: 171 KR-LPKDGREFRQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWI 230
           K      G+E  QS  +R KLDG+YECILCACCS SCP YWWNPE +LGPAALLHA RWI
Sbjct: 169 KNPASVPGKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWI 228

Query: 231 SDSRDEFEKERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAM 281
           SDSRDE+ KERL+AI +D+ KLYRC T+ NC   CPK L+P   I H+K +
Sbjct: 229 SDSRDEYTKERLEAI-DDEFKLYRCHTILNCARACPKGLNPGKQITHIKQL 276

[Close]

BLAST of Cp4.1LG01g09430 vs. ExPASy Swiss-Prot
Match: Q8LBZ7 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH2-1 PE=1 SV=2)

HSP 1 Score: 317.0 bits (811), Expect = 2.2e-85
Identity = 154/234 (65.81%), Postives = 179/234 (76.50%), Query Frame = 0


Query: 48  SNQKEFRVYRWSPEHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREG 107
           SN K F++YRW+P++P  KP LQ++ IDL  CG MVLDAL KIK E D SL++RRSCREG
Sbjct: 47  SNLKTFQIYRWNPDNPG-KPELQNYQIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREG 106

Query: 108 ICGSCAMNIDGANTVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPW 167
           ICGSCAMNIDG N +ACL  I  + S+ T ITPLPHMFVIKDL VD+TNFY QYKSIEPW
Sbjct: 107 ICGSCAMNIDGCNGLACLTKIQDEASE-TTITPLPHMFVIKDLVVDMTNFYNQYKSIEPW 166

Query: 168 LKTKR-LPKDGREFRQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHAC 227
           LK K       +E  QS  +R KLDG+YECILCACCS SCP YWWNPE +LGPAALLHA 
Sbjct: 167 LKRKTPASVPAKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHAN 226

Query: 228 RWISDSRDEFEKERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAM 281
           RWISDSRDE+ KERL+AI +D+ KLYRC T+ NC   CPK L+P   I H+K +
Sbjct: 227 RWISDSRDEYTKERLEAI-DDEFKLYRCHTILNCARACPKGLNPGKQITHIKQL 277

[Close]

BLAST of Cp4.1LG01g09430 vs. NCBI nr
Match: XP_023528748.1 (succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 609 bits (1571), Expect = 1.86e-220
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 0


Query: 1   MLRTWFRNAYNKALPKPPANQKFGLLDGHPAAQQHAQEAMEAHTKFKSNQKEFRVYRWSP 60
           MLRTWFRNAYNKALPKPPANQKFGLLDGHPAAQQHAQEAMEAHTKFKSNQKEFRVYRWSP
Sbjct: 1   MLRTWFRNAYNKALPKPPANQKFGLLDGHPAAQQHAQEAMEAHTKFKSNQKEFRVYRWSP 60

Query: 61  EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN 120
           EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN
Sbjct: 61  EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN 120

Query: 121 TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF 180
           TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF
Sbjct: 121 TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF 180

Query: 181 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER 240
           RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER
Sbjct: 181 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER 240

Query: 241 LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN 288
           LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN
Sbjct: 241 LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN 288

[Close]

BLAST of Cp4.1LG01g09430 vs. NCBI nr
Match: KAG7031269.1 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 602 bits (1551), Expect = 2.09e-217
Identity = 283/288 (98.26%), Postives = 287/288 (99.65%), Query Frame = 0


Query: 1   MLRTWFRNAYNKALPKPPANQKFGLLDGHPAAQQHAQEAMEAHTKFKSNQKEFRVYRWSP 60
           MLRTWFRNAYNKA+PKP ANQ+FG+LDGHPAAQQHAQEAMEAHTKFKSNQKEFRVYRWSP
Sbjct: 1   MLRTWFRNAYNKAVPKPAANQRFGVLDGHPAAQQHAQEAMEAHTKFKSNQKEFRVYRWSP 60

Query: 61  EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN 120
           EHPNHKPFLQSFFIDLSKCG+MVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN
Sbjct: 61  EHPNHKPFLQSFFIDLSKCGAMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN 120

Query: 121 TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF 180
           TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF
Sbjct: 121 TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF 180

Query: 181 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER 240
           RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER
Sbjct: 181 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER 240

Query: 241 LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN 288
           LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN
Sbjct: 241 LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN 288

[Close]

BLAST of Cp4.1LG01g09430 vs. NCBI nr
Match: XP_022982204.1 (succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Cucurbita maxima])

HSP 1 Score: 598 bits (1543), Expect = 3.46e-216
Identity = 282/288 (97.92%), Postives = 285/288 (98.96%), Query Frame = 0


Query: 1   MLRTWFRNAYNKALPKPPANQKFGLLDGHPAAQQHAQEAMEAHTKFKSNQKEFRVYRWSP 60
           MLRTWFRNAYNKA+PKP  NQKFG+LDGHPAAQQHAQEA+EAHT FKSNQKEFRVYRWSP
Sbjct: 1   MLRTWFRNAYNKAVPKPAPNQKFGVLDGHPAAQQHAQEAIEAHTNFKSNQKEFRVYRWSP 60

Query: 61  EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN 120
           EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN
Sbjct: 61  EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN 120

Query: 121 TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF 180
           TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF
Sbjct: 121 TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF 180

Query: 181 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER 240
           RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER
Sbjct: 181 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER 240

Query: 241 LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN 288
           LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN
Sbjct: 241 LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN 288

[Close]

BLAST of Cp4.1LG01g09430 vs. NCBI nr
Match: KAG6600633.1 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 598 bits (1543), Expect = 3.46e-216
Identity = 282/288 (97.92%), Postives = 286/288 (99.31%), Query Frame = 0


Query: 1   MLRTWFRNAYNKALPKPPANQKFGLLDGHPAAQQHAQEAMEAHTKFKSNQKEFRVYRWSP 60
           MLRTWFRNAYNKA+PKP ANQ+F +LDGHPAAQQHAQEAMEAHTKFKSNQKEFRVYRWSP
Sbjct: 1   MLRTWFRNAYNKAVPKPAANQRFEVLDGHPAAQQHAQEAMEAHTKFKSNQKEFRVYRWSP 60

Query: 61  EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN 120
           EHPNHKPFLQSFFIDLSKCG+MVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN
Sbjct: 61  EHPNHKPFLQSFFIDLSKCGAMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN 120

Query: 121 TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF 180
           TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF
Sbjct: 121 TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF 180

Query: 181 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER 240
           RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER
Sbjct: 181 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER 240

Query: 241 LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN 288
           LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN
Sbjct: 241 LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN 288

[Close]

BLAST of Cp4.1LG01g09430 vs. NCBI nr
Match: XP_022942066.1 (succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Cucurbita moschata])

HSP 1 Score: 598 bits (1541), Expect = 6.99e-216
Identity = 281/288 (97.57%), Postives = 287/288 (99.65%), Query Frame = 0


Query: 1   MLRTWFRNAYNKALPKPPANQKFGLLDGHPAAQQHAQEAMEAHTKFKSNQKEFRVYRWSP 60
           MLRTWFRNAY+KA+PKP ANQKFG+LDGHPAAQQHAQEAMEAHTKFKSNQKEFRVYRWSP
Sbjct: 1   MLRTWFRNAYSKAVPKPAANQKFGVLDGHPAAQQHAQEAMEAHTKFKSNQKEFRVYRWSP 60

Query: 61  EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN 120
           EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN
Sbjct: 61  EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN 120

Query: 121 TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF 180
           TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF
Sbjct: 121 TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF 180

Query: 181 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER 240
           RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEF+KER
Sbjct: 181 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFKKER 240

Query: 241 LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN 288
           LQAIAED+TKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLS+DNN
Sbjct: 241 LQAIAEDETKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSRDNN 288

[Close]

BLAST of Cp4.1LG01g09430 vs. ExPASy TrEMBL
Match: A0A6J1J3X0 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111481099 PE=3 SV=1)

HSP 1 Score: 598 bits (1543), Expect = 1.68e-216
Identity = 282/288 (97.92%), Postives = 285/288 (98.96%), Query Frame = 0


Query: 1   MLRTWFRNAYNKALPKPPANQKFGLLDGHPAAQQHAQEAMEAHTKFKSNQKEFRVYRWSP 60
           MLRTWFRNAYNKA+PKP  NQKFG+LDGHPAAQQHAQEA+EAHT FKSNQKEFRVYRWSP
Sbjct: 1   MLRTWFRNAYNKAVPKPAPNQKFGVLDGHPAAQQHAQEAIEAHTNFKSNQKEFRVYRWSP 60

Query: 61  EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN 120
           EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN
Sbjct: 61  EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN 120

Query: 121 TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF 180
           TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF
Sbjct: 121 TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF 180

Query: 181 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER 240
           RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER
Sbjct: 181 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER 240

Query: 241 LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN 288
           LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN
Sbjct: 241 LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN 288

[Close]

BLAST of Cp4.1LG01g09430 vs. ExPASy TrEMBL
Match: A0A6J1FMU7 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111447254 PE=3 SV=1)

HSP 1 Score: 598 bits (1541), Expect = 3.38e-216
Identity = 281/288 (97.57%), Postives = 287/288 (99.65%), Query Frame = 0


Query: 1   MLRTWFRNAYNKALPKPPANQKFGLLDGHPAAQQHAQEAMEAHTKFKSNQKEFRVYRWSP 60
           MLRTWFRNAY+KA+PKP ANQKFG+LDGHPAAQQHAQEAMEAHTKFKSNQKEFRVYRWSP
Sbjct: 1   MLRTWFRNAYSKAVPKPAANQKFGVLDGHPAAQQHAQEAMEAHTKFKSNQKEFRVYRWSP 60

Query: 61  EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN 120
           EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN
Sbjct: 61  EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN 120

Query: 121 TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF 180
           TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF
Sbjct: 121 TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF 180

Query: 181 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER 240
           RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEF+KER
Sbjct: 181 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFKKER 240

Query: 241 LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN 288
           LQAIAED+TKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLS+DNN
Sbjct: 241 LQAIAEDETKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSRDNN 288

[Close]

BLAST of Cp4.1LG01g09430 vs. ExPASy TrEMBL
Match: A0A6J1C7J5 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111008137 PE=3 SV=1)

HSP 1 Score: 509 bits (1311), Expect = 3.74e-181
Identity = 241/292 (82.53%), Postives = 260/292 (89.04%), Query Frame = 0


Query: 1   MLRTWFRNAYNKALPKPPANQKFGLLDGHPAAQQHAQEAMEAH----TKFKSNQKEFRVY 60
           ML++W R+ YNK      A  KFG L+GHPAAQQHA EAMEAH     K KS+QKEF++Y
Sbjct: 1   MLKSWSRHGYNKV-----AKSKFGALEGHPAAQQHAAEAMEAHGEVQRKLKSHQKEFKIY 60

Query: 61  RWSPEHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNI 120
           RW+PE+PN KPFLQSFF+ LS CG MVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNI
Sbjct: 61  RWNPEYPNRKPFLQSFFVQLSNCGPMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNI 120

Query: 121 DGANTVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKD 180
           DG NTVACLK ID DTSKPTIITPLPHMFVIKDL VDLTNFY QYKSIEPWLKTKRLP+D
Sbjct: 121 DGGNTVACLKLIDADTSKPTIITPLPHMFVIKDLVVDLTNFYHQYKSIEPWLKTKRLPED 180

Query: 181 GREFRQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEF 240
           GREF+QSP +R+KLDGLYECILCACC+ SCPPYWWNPEEFLGPAALLHA RWISDSRD+F
Sbjct: 181 GREFKQSPVQRKKLDGLYECILCACCTTSCPPYWWNPEEFLGPAALLHAYRWISDSRDDF 240

Query: 241 EKERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN 288
           E+ERLQAIAEDKTKLYRCRTV+NCTANCPKSLDPSGAIH MKAMHL+SK NN
Sbjct: 241 EEERLQAIAEDKTKLYRCRTVKNCTANCPKSLDPSGAIHQMKAMHLISKSNN 287

[Close]

BLAST of Cp4.1LG01g09430 vs. ExPASy TrEMBL
Match: A0A5A7TNF4 (Iron-sulfur subunit of complex II OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005780 PE=3 SV=1)

HSP 1 Score: 505 bits (1300), Expect = 2.13e-179
Identity = 237/292 (81.16%), Postives = 264/292 (90.41%), Query Frame = 0


Query: 1   MLRTWFRNAYNKALPKPPANQKFGLLDGHPAAQQHAQEAMEAHTKFKSN-----QKEFRV 60
           ML++WFR+AYNK      + Q+FG+L+ HP A+QHA+EAMEAH + KSN     QKEF++
Sbjct: 1   MLKSWFRHAYNKV-----SKQRFGVLEEHPMAKQHAEEAMEAHGEIKSNLRFNNQKEFKI 60

Query: 61  YRWSPEHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMN 120
           YRW+P++PNHKPFL SFF+DLSKCG MVLDALQ IKAE+DSSLSYRRSCREGICGSCAMN
Sbjct: 61  YRWNPQYPNHKPFLHSFFLDLSKCGPMVLDALQMIKAEKDSSLSYRRSCREGICGSCAMN 120

Query: 121 IDGANTVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPK 180
           IDGANTVACLKPID DTSKPTIITPLPHM+VIKDL VDLTNFYQQYKSIEPWLKT+R  +
Sbjct: 121 IDGANTVACLKPIDADTSKPTIITPLPHMYVIKDLVVDLTNFYQQYKSIEPWLKTRRSAE 180

Query: 181 DGREFRQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDE 240
            GREFRQ+PAER+KLDGLYECILCACCSASCPPYWWNPEEF+GPAALLHA RWISDSRDE
Sbjct: 181 GGREFRQTPAERKKLDGLYECILCACCSASCPPYWWNPEEFIGPAALLHAYRWISDSRDE 240

Query: 241 FEKERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDN 287
           F+KERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPS AIH+MKAMHL+ + N
Sbjct: 241 FKKERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPSSAIHNMKAMHLIFRSN 287

[Close]

BLAST of Cp4.1LG01g09430 vs. ExPASy TrEMBL
Match: A0A1S3BY85 (Iron-sulfur subunit of complex II OS=Cucumis melo OX=3656 GN=LOC103494868 PE=3 SV=1)

HSP 1 Score: 505 bits (1300), Expect = 2.13e-179
Identity = 237/292 (81.16%), Postives = 264/292 (90.41%), Query Frame = 0


Query: 1   MLRTWFRNAYNKALPKPPANQKFGLLDGHPAAQQHAQEAMEAHTKFKSN-----QKEFRV 60
           ML++WFR+AYNK      + Q+FG+L+ HP A+QHA+EAMEAH + KSN     QKEF++
Sbjct: 1   MLKSWFRHAYNKV-----SKQRFGVLEEHPMAKQHAEEAMEAHGEIKSNLRFNNQKEFKI 60

Query: 61  YRWSPEHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMN 120
           YRW+P++PNHKPFL SFF+DLSKCG MVLDALQ IKAE+DSSLSYRRSCREGICGSCAMN
Sbjct: 61  YRWNPQYPNHKPFLHSFFLDLSKCGPMVLDALQMIKAEKDSSLSYRRSCREGICGSCAMN 120

Query: 121 IDGANTVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPK 180
           IDGANTVACLKPID DTSKPTIITPLPHM+VIKDL VDLTNFYQQYKSIEPWLKT+R  +
Sbjct: 121 IDGANTVACLKPIDADTSKPTIITPLPHMYVIKDLVVDLTNFYQQYKSIEPWLKTRRSAE 180

Query: 181 DGREFRQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDE 240
            GREFRQ+PAER+KLDGLYECILCACCSASCPPYWWNPEEF+GPAALLHA RWISDSRDE
Sbjct: 181 GGREFRQTPAERKKLDGLYECILCACCSASCPPYWWNPEEFIGPAALLHAYRWISDSRDE 240

Query: 241 FEKERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDN 287
           F+KERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPS AIH+MKAMHL+ + N
Sbjct: 241 FKKERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPSSAIHNMKAMHLIFRSN 287

[Close]

BLAST of Cp4.1LG01g09430 vs. TAIR 10
Match: AT5G65165.1 (succinate dehydrogenase 2-3 )

HSP 1 Score: 414.5 bits (1064), Expect = 7.2e-116
Identity = 193/269 (71.75%), Postives = 227/269 (84.39%), Query Frame = 0


Query: 23  FGLLDGHPAAQQHAQEAMEAH--TKFKSNQ-----KEFRVYRWSPEHPNHKPFLQSFFID 82
           F +L+GH AAQ  +++ +++   TK K  Q     KEF++YRW+P+ PN KPFLQSFF+D
Sbjct: 32  FPILNGHKAAQDLSKDTLKSQDITKEKEGQHKEVKKEFKIYRWNPDKPNSKPFLQSFFVD 91

Query: 83  LSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGANTVACLKPIDTDTSKP 142
           LS CG MVLD LQKIKAE+D+SLSYRRSCREGICGSC+MNIDG NTVACLKPI+ +TSKP
Sbjct: 92  LSSCGPMVLDVLQKIKAEDDASLSYRRSCREGICGSCSMNIDGTNTVACLKPINPNTSKP 151

Query: 143 TIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREFRQSPAERRKLDGLYE 202
           TIITPLPHM+VIKDL VDLTNFYQQYKS+EPWLKT++ PKDGRE RQSP +R+KLDGLYE
Sbjct: 152 TIITPLPHMYVIKDLVVDLTNFYQQYKSMEPWLKTRKPPKDGREHRQSPKDRKKLDGLYE 211

Query: 203 CILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKERLQAIAEDKTKLYRCR 262
           CILCACC+ SCP YWWNPEEF GPAALL A RWISDSRDE+ +ERLQAI E +TK+YRCR
Sbjct: 212 CILCACCTTSCPSYWWNPEEFPGPAALLQAYRWISDSRDEYREERLQAITESETKVYRCR 271

Query: 263 TVQNCTANCPKSLDPSGAIHHMKAMHLLS 285
            ++NCTA CPK L+P+ AI  MK+ HLLS
Sbjct: 272 AIKNCTATCPKGLNPASAILKMKSKHLLS 300

[Close]

BLAST of Cp4.1LG01g09430 vs. TAIR 10
Match: AT5G40650.1 (succinate dehydrogenase 2-2 )

HSP 1 Score: 318.2 bits (814), Expect = 7.0e-87
Identity = 154/231 (66.67%), Postives = 178/231 (77.06%), Query Frame = 0


Query: 51  KEFRVYRWSPEHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICG 110
           K F++YRW+P++P  KP LQ + IDL  CG MVLDAL KIK E D SL++RRSCREGICG
Sbjct: 49  KTFQIYRWNPDNPG-KPELQDYKIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICG 108

Query: 111 SCAMNIDGANTVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKT 170
           SCAMNIDG N +ACL  I++  SK T ITPLPHMFVIKDL VD+TNFY QYKSIEPWLK 
Sbjct: 109 SCAMNIDGCNGLACLTKIESG-SKETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKR 168

Query: 171 KR-LPKDGREFRQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWI 230
           K      G+E  QS  +R KLDG+YECILCACCS SCP YWWNPE +LGPAALLHA RWI
Sbjct: 169 KNPASVPGKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWI 228

Query: 231 SDSRDEFEKERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAM 281
           SDSRDE+ KERL+AI +D+ KLYRC T+ NC   CPK L+P   I H+K +
Sbjct: 229 SDSRDEYTKERLEAI-DDEFKLYRCHTILNCARACPKGLNPGKQITHIKQL 276

[Close]

BLAST of Cp4.1LG01g09430 vs. TAIR 10
Match: AT3G27380.1 (succinate dehydrogenase 2-1 )

HSP 1 Score: 317.0 bits (811), Expect = 1.6e-86
Identity = 154/234 (65.81%), Postives = 179/234 (76.50%), Query Frame = 0


Query: 48  SNQKEFRVYRWSPEHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREG 107
           SN K F++YRW+P++P  KP LQ++ IDL  CG MVLDAL KIK E D SL++RRSCREG
Sbjct: 47  SNLKTFQIYRWNPDNPG-KPELQNYQIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREG 106

Query: 108 ICGSCAMNIDGANTVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPW 167
           ICGSCAMNIDG N +ACL  I  + S+ T ITPLPHMFVIKDL VD+TNFY QYKSIEPW
Sbjct: 107 ICGSCAMNIDGCNGLACLTKIQDEASE-TTITPLPHMFVIKDLVVDMTNFYNQYKSIEPW 166

Query: 168 LKTKR-LPKDGREFRQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHAC 227
           LK K       +E  QS  +R KLDG+YECILCACCS SCP YWWNPE +LGPAALLHA 
Sbjct: 167 LKRKTPASVPAKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHAN 226

Query: 228 RWISDSRDEFEKERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAM 281
           RWISDSRDE+ KERL+AI +D+ KLYRC T+ NC   CPK L+P   I H+K +
Sbjct: 227 RWISDSRDEYTKERLEAI-DDEFKLYRCHTILNCARACPKGLNPGKQITHIKQL 277

[Close]

BLAST of Cp4.1LG01g09430 vs. TAIR 10
Match: AT3G27380.2 (succinate dehydrogenase 2-1 )

HSP 1 Score: 317.0 bits (811), Expect = 1.6e-86
Identity = 154/234 (65.81%), Postives = 179/234 (76.50%), Query Frame = 0


Query: 48  SNQKEFRVYRWSPEHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREG 107
           SN K F++YRW+P++P  KP LQ++ IDL  CG MVLDAL KIK E D SL++RRSCREG
Sbjct: 47  SNLKTFQIYRWNPDNPG-KPELQNYQIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREG 106

Query: 108 ICGSCAMNIDGANTVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPW 167
           ICGSCAMNIDG N +ACL  I  + S+ T ITPLPHMFVIKDL VD+TNFY QYKSIEPW
Sbjct: 107 ICGSCAMNIDGCNGLACLTKIQDEASE-TTITPLPHMFVIKDLVVDMTNFYNQYKSIEPW 166

Query: 168 LKTKR-LPKDGREFRQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHAC 227
           LK K       +E  QS  +R KLDG+YECILCACCS SCP YWWNPE +LGPAALLHA 
Sbjct: 167 LKRKTPASVPAKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHAN 226

Query: 228 RWISDSRDEFEKERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAM 281
           RWISDSRDE+ KERL+AI +D+ KLYRC T+ NC   CPK L+P   I H+K +
Sbjct: 227 RWISDSRDEYTKERLEAI-DDEFKLYRCHTILNCARACPKGLNPGKQITHIKQL 277

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g09430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJP9	1.0e-114	71.75	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial OS=Ara...	[more]
Q6H4G3	2.4e-100	60.90	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Ory...	[more]
Q9S827	1.2e-86	63.33	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Ory...	[more]
Q8LB02	9.8e-86	66.67	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Ara...	[more]
Q8LBZ7	2.2e-85	65.81	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Ara...	[more]

BLAST of Cp4.1LG01g09430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023528748.1	1.86e-220	100.00	succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Cucur...	[more]
KAG7031269.1	2.09e-217	98.26	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial, parti...	[more]
XP_022982204.1	3.46e-216	97.92	succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Cucur...	[more]
KAG6600633.1	3.46e-216	97.92	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial, parti...	[more]
XP_022942066.1	6.99e-216	97.57	succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Cucur...	[more]

BLAST of Cp4.1LG01g09430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J3X0	1.68e-216	97.92	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Cucur...	[more]
A0A6J1FMU7	3.38e-216	97.57	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Cucur...	[more]
A0A6J1C7J5	3.74e-181	82.53	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Momor...	[more]
A0A5A7TNF4	2.13e-179	81.16	Iron-sulfur subunit of complex II OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BY85	2.13e-179	81.16	Iron-sulfur subunit of complex II OS=Cucumis melo OX=3656 GN=LOC103494868 PE=3 S...	[more]

BLAST of Cp4.1LG01g09430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65165.1	7.2e-116	71.75	succinate dehydrogenase 2-3	[more]
AT5G40650.1	7.0e-87	66.67	succinate dehydrogenase 2-2	[more]
AT3G27380.1	1.6e-86	65.81	succinate dehydrogenase 2-1	[more]
AT3G27380.2	1.6e-86	65.81	succinate dehydrogenase 2-1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13534	Fer4_17	coord: 195..269 e-value: 3.1E-7 score: 30.9
None	No IPR available	PANTHER	PTHR11921:SF40	SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR SUBUNIT 3, MITOCHONDRIAL	coord: 7..286
None	No IPR available	PANTHER	PTHR11921	SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN	coord: 7..286
None	No IPR available	SUPERFAMILY	46548	alpha-helical ferredoxin	coord: 155..281
IPR004489	Succinate dehydrogenase/fumarate reductase iron-sulphur protein	TIGRFAM	TIGR00384	TIGR00384	coord: 55..278 e-value: 3.7E-78 score: 260.0
IPR025192	Succinate dehydogenase/fumarate reductase N-terminal	PFAM	PF13085	Fer2_3	coord: 53..158 e-value: 8.2E-31 score: 106.2
IPR009051	Alpha-helical ferredoxin	GENE3D	1.10.1060.10		coord: 154..288 e-value: 2.2E-44 score: 152.4
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 41..153 e-value: 2.0E-39 score: 135.9
IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	PROSITE	PS00198	4FE4S_FER_1	coord: 196..207
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 104..112
IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain	PROSITE	PS51379	4FE4S_FER_2	coord: 186..216 score: 7.508345
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 65..144 score: 8.639751
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 80..117 e-value: 0.00371453 score: 33.9076
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 50..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g09430.1	Cp4.1LG01g09430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022904	respiratory electron transport chain
biological_process	GO:0006099	tricarboxylic acid cycle
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0045273	respiratory chain complex II
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0051538	3 iron, 4 sulfur cluster binding
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008177	succinate dehydrogenase (ubiquinone) activity
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0016491	oxidoreductase activity