Cp4.1LG01g09230 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g09230
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description50S ribosomal protein L29, chloroplastic-like
LocationCp4.1LG01: 4393280 .. 4395600 (+)
RNA-Seq ExpressionCp4.1LG01g09230
SyntenyCp4.1LG01g09230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGGGTCGACTGGAAAGGGCAAAACAGGTATGAAAAAGAATAAAAGAAAGGGCGAGAGCTTATCTTCATCTTGAATAGCAGCTGGGCTTCTTCTTCGAACAAAAGCGCTGTGCTGTGACTGAGCGAAACCACACACTGACGGTGAAGATGATAAACCTTTCAATTGCTTCGCCTTCGAGCGTTTCGTTCCCTTCTAAATTTCTTAGCTCGACCTCCAAATCCTCCTTCAATGGCCGTCAAATCCGTTTCCCATTTTCGTTTCGCGTTCCTCCTAAAACAGCATCTACCGGAGGCCGCAATTCGTTGGTGGTAATGATGGCGAAGAGGGAGGAGGAGTTGAAGGAAATCAGAACGAAAACTACTGAGGAAATAAACGAAGAGGTCATCGATCTTAAGGGTGAACTTCTCATGCTTCGGCTTCAGAAATCAGCTCGCAATGAGTTTAAGTCCAGCGAATTCCGCCGCATGCGCAAACGGGTAATTTTCTCCCTTATTGATAGATTCTTAATTAACTTTGAGTTCTATTGTAATGTGGCTTTTTTGTTCGTCTTTAATTTATAATCTATGCGAAGTATATTTTAAGTCTTACAGTCTCCCATTCTCCACATTTCTGCTTATTTTGTGCTGAATTTGATGGTCGGATTGAAATTTGGGGCTCATTGGTTTCCAATGGGGTTTCGTAGCTGTTGGAATCTAAGATTATTGCGTATTATTTGCCGCCAAATGAAAGAAGAGTAGCAAATTAACGTATGAAAAGTAAAAAGAAAAAAAGAACCTCGAACGGTATGTTTCACCATGTTGGGAAAAGCTTAGAGAAGCTGCATTTGAAGGAAATAGAAAAACCAATGCAATTAGGGGGCCAGTTAGAGCTGCTCTGCAACTTAGAAATTCAATTAGAATCAAGAAAGGTAATCGAAATTGGGATTTCTGGGCATTAAAAACTTCGCATTCGACTAGGATTAACTCCAAATTTTGTATACGTTTAGCACCTGTCTTCAAAAAACTCTTCAATGTCTTCCTGCTAACATTTTATCTAAGATTCCCAAAATTCCGGAAGCATGAATGAGCCTATAAATGTGGAAATGAGAATTCCATAGAAGATGTTATTTGATAAACTAAACCTATTCTGATCACGAAGCATCACAATGTTGAATGTATAGAGAGAGCCATTTGCATTTGAACAATATGTAGCCTTCTCATGACTTTTCTATCAAAGTTCTTCCTGTTTAGTGCATTACATGGATGTCGGAATTGTTTGCTGGGCCTCTCACTGTAATATGCTTGTTCTATTTGTAAGACTTGCCGTTCTCATAGTTTCGTCGTGACGAGTCTGAGGATTTAGGAAGTGAACTCTTTTCATTTATAGTTGAATTCCACACCTTCATGATAAGTTTAGATGCTCATAGTTACCCTCTTAAGGGTTGGTTCTGGATTCCAACTTGACAACTTACCGCTTAAAATCCTTCCTTACCGTCTAGCCTGCTCGAAAATTGGTAGTGTGGATCATGAATATGGAAGTGGGGCTTGATGATCAATATAGTATTGCAGAGATTGATTAATATATTTGCTGATGCAGGACAGTTTGGAAGTTTATATAGTAGACGGTTCCTGTCTCCTTCTTGTTGTTCTTTATCTCCACACACTTTCGGTTTGCGACATTGTCGCTATACATCCATTTTTCTTCTTTTTCTCCTCTCTTTCTCCGAGTTATCAATCTCTTAACCCTGAACTGTGGTTGAAATATTATATGCCTTAACTAATTGAGCTATGCTTAATTTGGGAGCTAACATCGAATATTTGGGCTCAGCCCAACAACTTTCGTTTCGTTTCTCTTATACATCCATGAAACTTGGAGTTTTGTGCAGATTGCTCGGATGCTAACCGTGAAACGTGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGCTGTCAAGAAAGCTAGACAGAAAGTGGAAGAGAAGTATTGTGGTCAGACCACCTCCATCTTTGAAGAAGTTGCGAGAGGAAGAAGCAGCCGCTGAAGAAGCTGAGAAATCTGCTTGATCCAATCAGATATACTCTCAATCAATATTGTGGCTTTATGAGTTTCTGATTTTTTTTTTATTTTCCCGAAAAATTCTTATGTTGTACTTAGATTATGCATAAATGGGAACATATTCTGAATAATTCTAATCTTCAAATTGAAAATTCTATTACTTATTCTTAGTTGATTCAAGAGATTGTGGGAAACTCCCATGAAGCATGTTTTTGATTAAGAAGTTTTTGTTAATGGTAGTTTAGTCTAAAAATTGTATTTAATTATAGTCATTTTATTTGATGTTA

mRNA sequence

TGGGGTCGACTGGAAAGGGCAAAACAGGTATGAAAAAGAATAAAAGAAAGGGCGAGAGCTTATCTTCATCTTGAATAGCAGCTGGGCTTCTTCTTCGAACAAAAGCGCTGTGCTGTGACTGAGCGAAACCACACACTGACGGTGAAGATGATAAACCTTTCAATTGCTTCGCCTTCGAGCGTTTCGTTCCCTTCTAAATTTCTTAGCTCGACCTCCAAATCCTCCTTCAATGGCCGTCAAATCCGTTTCCCATTTTCGTTTCGCGTTCCTCCTAAAACAGCATCTACCGGAGGCCGCAATTCGTTGGTGGTAATGATGGCGAAGAGGGAGGAGGAGTTGAAGGAAATCAGAACGAAAACTACTGAGGAAATAAACGAAGAGGTCATCGATCTTAAGGGTGAACTTCTCATGCTTCGGCTTCAGAAATCAGCTCGCAATGAGTTTAAGTCCAGCGAATTCCGCCGCATGCGCAAACGGATTGCTCGGATGCTAACCGTGAAACGTGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGCTGTCAAGAAAGCTAGACAGAAAGTGGAAGAGAAGTATTGTGGTCAGACCACCTCCATCTTTGAAGAAGTTGCGAGAGGAAGAAGCAGCCGCTGAAGAAGCTGAGAAATCTGCTTGATCCAATCAGATATACTCTCAATCAATATTGTGGCTTTATGAGTTTCTGATTTTTTTTTTATTTTCCCGAAAAATTCTTATGTTGTACTTAGATTATGCATAAATGGGAACATATTCTGAATAATTCTAATCTTCAAATTGAAAATTCTATTACTTATTCTTAGTTGATTCAAGAGATTGTGGGAAACTCCCATGAAGCATGTTTTTGATTAAGAAGTTTTTGTTAATGGTAGTTTAGTCTAAAAATTGTATTTAATTATAGTCATTTTATTTGATGTTA

Coding sequence (CDS)

ATGATAAACCTTTCAATTGCTTCGCCTTCGAGCGTTTCGTTCCCTTCTAAATTTCTTAGCTCGACCTCCAAATCCTCCTTCAATGGCCGTCAAATCCGTTTCCCATTTTCGTTTCGCGTTCCTCCTAAAACAGCATCTACCGGAGGCCGCAATTCGTTGGTGGTAATGATGGCGAAGAGGGAGGAGGAGTTGAAGGAAATCAGAACGAAAACTACTGAGGAAATAAACGAAGAGGTCATCGATCTTAAGGGTGAACTTCTCATGCTTCGGCTTCAGAAATCAGCTCGCAATGAGTTTAAGTCCAGCGAATTCCGCCGCATGCGCAAACGGATTGCTCGGATGCTAACCGTGAAACGTGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGCTGTCAAGAAAGCTAGACAGAAAGTGGAAGAGAAGTATTGTGGTCAGACCACCTCCATCTTTGAAGAAGTTGCGAGAGGAAGAAGCAGCCGCTGAAGAAGCTGAGAAATCTGCTTGA

Protein sequence

MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSLVVMMAKREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA
Homology
[Close]
BLAST of Cp4.1LG01g09230 vs. ExPASy Swiss-Prot
Match: Q9FJP3 (50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL29 PE=1 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.7e-45
Identity = 112/168 (66.67%), Postives = 136/168 (80.95%), Query Frame = 0 

Query: 1   MINLSIASPSSVS-FPSKFLSSTS-KSSFNGRQIRFPFSFRVP-PKTASTGGRNSLVVMM 60
           M++LSIA+P + + F     S+TS  SSF+G +I+   S RVP   T S+      VVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTV 120
           +KRE ELKEIR+KTTE++ EEV+DLKGEL MLRLQKSARNEFKSS+FRRM+K++ARMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAE 166
           KREREI+EG+ KRLSRKLDR+WK+SIV RPPPSLKKL+EEEAA E AE
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAE 168

[Close]
BLAST of Cp4.1LG01g09230 vs. ExPASy Swiss-Prot
Match: P82248 (50S ribosomal protein L29, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL29 PE=1 SV=2)

HSP 1 Score: 161.0 bits (406), Expect = 1.2e-38
Identity = 94/148 (63.51%), Postives = 116/148 (78.38%), Query Frame = 0 

Query: 23  SKSSFNGRQ---IRFPFSFRVPPKTASTGGRNSLVVMMAKREEELKEIRTKTTEEINEEV 82
           +KSSF+G +   +    S R+  +T       S VV+M K+E+ELKE+RTKT E++NEE+
Sbjct: 26  TKSSFHGLRLPSVNLSSSLRLRVQTPP-----SSVVVMVKKEDELKELRTKTNEQLNEEI 85

Query: 83  IDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKW 142
           + LKGEL MLRLQ+SAR  FK S+F RMRKR+ARMLTVKREREIE+GVGKRLSRKLD+ W
Sbjct: 86  LQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKREREIEQGVGKRLSRKLDKAW 145

Query: 143 KRSIVVRPPPSLKKLREEEAAAEEAEKS 168
           KRSIVVRPPPSLKKL+E+  A  EAEK+
Sbjct: 146 KRSIVVRPPPSLKKLQEKATAEAEAEKA 168

[Close]
BLAST of Cp4.1LG01g09230 vs. ExPASy Swiss-Prot
Match: Q9SWI6 (50S ribosomal protein L29, chloroplastic OS=Zea mays OX=4577 GN=RPL29 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.5e-35
Identity = 80/108 (74.07%), Postives = 96/108 (88.89%), Query Frame = 0 

Query: 50  RNSLVVMMAKREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRK 109
           R + +V MAKRE+EL+EIR  TTE++ EEV+DLKGEL +LRL++SAR EFK+SEF RMRK
Sbjct: 54  RAAAMVAMAKREQELEEIRAMTTEQMEEEVVDLKGELFLLRLKRSARQEFKNSEFSRMRK 113

Query: 110 RIARMLTVKREREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREE 158
           RIARMLTVKREREIE+G+ KRLSRKLDRKWK+SIVVRPPPSL+  +EE
Sbjct: 114 RIARMLTVKREREIEQGINKRLSRKLDRKWKQSIVVRPPPSLRGNKEE 161

[Close]
BLAST of Cp4.1LG01g09230 vs. ExPASy Swiss-Prot
Match: Q49ZG0 (50S ribosomal protein L29 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=rpmC PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.5e-04
Identity = 30/62 (48.39%), Postives = 39/62 (62.90%), Query Frame = 0 

Query: 65  KEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIE 124
           KEIR  TT EI E++   K EL  LR Q +     +++  R +RK IAR+ TV REREIE
Sbjct: 4   KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63

Query: 125 EG 127
           +G
Sbjct: 64  QG 65

[Close]
BLAST of Cp4.1LG01g09230 vs. ExPASy Swiss-Prot
Match: Q4L8A6 (50S ribosomal protein L29 OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 GN=rpmC PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 5.5e-04
Identity = 30/61 (49.18%), Postives = 38/61 (62.30%), Query Frame = 0 

Query: 65  KEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIE 124
           KEIR  TT EI E++   K EL  LR Q +     +++  R +RK IAR+ TV REREIE
Sbjct: 4   KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63

Query: 125 E 126
           E
Sbjct: 64  E 64

[Close]
BLAST of Cp4.1LG01g09230 vs. NCBI nr
Match: XP_023531622.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 298 bits (764), Expect = 2.04e-101
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSLVVMMAKR 60
           MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSLVVMMAKR
Sbjct: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSLVVMMAKR 60

Query: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168
           REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Cp4.1LG01g09230 vs. NCBI nr
Match: XP_022941582.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita moschata] >KAG6600658.1 50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031295.1 50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 296 bits (758), Expect = 1.67e-100
Identity = 167/168 (99.40%), Postives = 167/168 (99.40%), Query Frame = 0 

Query: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSLVVMMAKR 60
           MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNS VVMMAKR
Sbjct: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168
           REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Cp4.1LG01g09230 vs. NCBI nr
Match: XP_022977189.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 295 bits (755), Expect = 4.80e-100
Identity = 166/168 (98.81%), Postives = 167/168 (99.40%), Query Frame = 0 

Query: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSLVVMMAKR 60
           M+NLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNS VVMMAKR
Sbjct: 1   MMNLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168
           REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Cp4.1LG01g09230 vs. NCBI nr
Match: KAG6577307.1 (50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015397.1 50S ribosomal protein L29, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 276 bits (705), Expect = 2.00e-92
Identity = 155/168 (92.26%), Postives = 160/168 (95.24%), Query Frame = 0 

Query: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSLVVMMAKR 60
           M+NLSIASPSSV+ P+KFLSSTSKSSFNG QIRFPFSFRVPPK A TGGRNS VVMMAKR
Sbjct: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACTGGRNSPVVMMAKR 60

Query: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168
           REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEE AAE AEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEEAAEAAEKSA 168

[Close]
BLAST of Cp4.1LG01g09230 vs. NCBI nr
Match: XP_038903244.1 (50S ribosomal protein L29, chloroplastic [Benincasa hispida])

HSP 1 Score: 275 bits (702), Expect = 5.74e-92
Identity = 155/168 (92.26%), Postives = 160/168 (95.24%), Query Frame = 0 

Query: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSLVVMMAKR 60
           MINLSIASPS+VS P K L+STSKSSFNG QIRFPFSFRVPPKTA TGGRNS VVMMAKR
Sbjct: 1   MINLSIASPSTVSIPLKVLTSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNSSVVMMAKR 60

Query: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKEIR K+TEEI EEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRAKSTEEIKEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Cp4.1LG01g09230 vs. ExPASy TrEMBL
Match: A0A6J1FMW5 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446894 PE=3 SV=1)

HSP 1 Score: 296 bits (758), Expect = 8.11e-101
Identity = 167/168 (99.40%), Postives = 167/168 (99.40%), Query Frame = 0 

Query: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSLVVMMAKR 60
           MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNS VVMMAKR
Sbjct: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168
           REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Cp4.1LG01g09230 vs. ExPASy TrEMBL
Match: A0A6J1IQR3 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477475 PE=3 SV=1)

HSP 1 Score: 295 bits (755), Expect = 2.32e-100
Identity = 166/168 (98.81%), Postives = 167/168 (99.40%), Query Frame = 0 

Query: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSLVVMMAKR 60
           M+NLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNS VVMMAKR
Sbjct: 1   MMNLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168
           REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Cp4.1LG01g09230 vs. ExPASy TrEMBL
Match: A0A6J1JCM6 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111483200 PE=3 SV=1)

HSP 1 Score: 273 bits (699), Expect = 7.97e-92
Identity = 154/168 (91.67%), Postives = 159/168 (94.64%), Query Frame = 0 

Query: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSLVVMMAKR 60
           MINLSIASPSSV+ P+KFLSSTSKSSFNG QIRFPFSFRVPPK A  GGRNS VVMMAKR
Sbjct: 1   MINLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACIGGRNSPVVMMAKR 60

Query: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEE AAE AEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEAAEKSA 168

[Close]
BLAST of Cp4.1LG01g09230 vs. ExPASy TrEMBL
Match: A0A6J1EMX4 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111435958 PE=3 SV=1)

HSP 1 Score: 265 bits (678), Expect = 1.14e-88
Identity = 148/162 (91.36%), Postives = 154/162 (95.06%), Query Frame = 0 

Query: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSLVVMMAKR 60
           M+NLSIASPSSV+ P+KFLSSTSKSSFNG QIRFPFS RVPPK A TGGRNS VVMMAKR
Sbjct: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKR 60

Query: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAE 162
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEE AAE
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAE 162

[Close]
BLAST of Cp4.1LG01g09230 vs. ExPASy TrEMBL
Match: A0A0A0KVL7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095600 PE=3 SV=1)

HSP 1 Score: 265 bits (676), Expect = 2.73e-88
Identity = 152/170 (89.41%), Postives = 163/170 (95.88%), Query Frame = 0 

Query: 1   MINLSIAS-PSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTG-GRNSLVVMMA 60
           MINLSIAS PS++  PSKFL+STSKSSFN  QIRFPFSFR+PPKTA+TG GRNS VVMMA
Sbjct: 1   MINLSIASLPSTLPIPSKFLNSTSKSSFNALQIRFPFSFRLPPKTATTGRGRNSSVVMMA 60

Query: 61  KREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120
           KRE+ELK+IR+KTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRI+RMLTV+
Sbjct: 61  KREDELKDIRSKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVR 120

Query: 121 REREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168
           REREIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170

[Close]
BLAST of Cp4.1LG01g09230 vs. TAIR 10
Match: AT5G65220.1 (Ribosomal L29 family protein )

HSP 1 Score: 183.7 bits (465), Expect = 1.2e-46
Identity = 112/168 (66.67%), Postives = 136/168 (80.95%), Query Frame = 0 

Query: 1   MINLSIASPSSVS-FPSKFLSSTS-KSSFNGRQIRFPFSFRVP-PKTASTGGRNSLVVMM 60
           M++LSIA+P + + F     S+TS  SSF+G +I+   S RVP   T S+      VVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKREEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTV 120
           +KRE ELKEIR+KTTE++ EEV+DLKGEL MLRLQKSARNEFKSS+FRRM+K++ARMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAE 166
           KREREI+EG+ KRLSRKLDR+WK+SIV RPPPSLKKL+EEEAA E AE
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAE 168

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g09230 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FJP31.7e-4566.6750S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2... [more]
P822481.2e-3863.5150S ribosomal protein L29, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL29 P... [more]
Q9SWI63.5e-3574.0750S ribosomal protein L29, chloroplastic OS=Zea mays OX=4577 GN=RPL29 PE=2 SV=1[more]
Q49ZG02.5e-0448.3950S ribosomal protein L29 OS=Staphylococcus saprophyticus subsp. saprophyticus (... [more]
Q4L8A65.5e-0449.1850S ribosomal protein L29 OS=Staphylococcus haemolyticus (strain JCSC1435) OX=27... [more]
BLAST of Cp4.1LG01g09230 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023531622.12.04e-101100.0050S ribosomal protein L29, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022941582.11.67e-10099.4050S ribosomal protein L29, chloroplastic-like [Cucurbita moschata] >KAG6600658.1... [more]
XP_022977189.14.80e-10098.8150S ribosomal protein L29, chloroplastic-like [Cucurbita maxima][more]
KAG6577307.12.00e-9292.2650S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
XP_038903244.15.74e-9292.2650S ribosomal protein L29, chloroplastic [Benincasa hispida][more]
BLAST of Cp4.1LG01g09230 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FMW58.11e-10199.4050S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1IQR32.32e-10098.8150S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1JCM67.97e-9291.6750S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1EMX41.14e-8891.3650S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A0A0KVL72.73e-8889.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095600 PE=3 SV=1[more]
BLAST of Cp4.1LG01g09230 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G65220.11.2e-4666.67Ribosomal L29 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001854Ribosomal protein L29/L35TIGRFAMTIGR00012TIGR00012coord: 66..121
e-value: 3.1E-16
score: 57.1
IPR001854Ribosomal protein L29/L35PFAMPF00831Ribosomal_L29coord: 65..121
e-value: 8.9E-14
score: 51.2
IPR001854Ribosomal protein L29/L35HAMAPMF_00374Ribosomal_L29coord: 62..121
score: 13.550307
IPR036049Ribosomal protein L29/L35 superfamilyGENE3D1.10.287.310coord: 63..126
e-value: 1.3E-14
score: 55.9
IPR036049Ribosomal protein L29/L35 superfamilySUPERFAMILY46561Ribosomal protein L29 (L29p)coord: 64..124
NoneNo IPR availablePANTHERPTHR1091660S RIBOSOMAL PROTEIN L35/50S RIBOSOMAL PROTEIN L29coord: 1..168
NoneNo IPR availablePANTHERPTHR10916:SF1SUBFAMILY NOT NAMEDcoord: 1..168
NoneNo IPR availableCDDcd00427Ribosomal_L29_HIPcoord: 65..121
e-value: 9.9625E-16
score: 65.5867

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g09230.1Cp4.1LG01g09230.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome